An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: computational-pathology

boyden/NuHTC

NuHTC: A Hybrid Task Cascade for Nuclei Instance Segmentation and Classification

Language: Python - Size: 33.8 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 9 - Forks: 1

AmayaGS/BioX-CPath

A biologically interpretable graph neural network for multistain computational pathology - CVPR 2025

Language: Python - Size: 54.3 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 11 - Forks: 0

qupath/qupath

QuPath - Open-source bioimage analysis for research

Language: Java - Size: 97.4 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 1,149 - Forks: 298

mafrs47/Lung_Cancer_Prediction

This project predicts lung cancer risks using machine learning models like Random Forest, Logistic Regression, and SVM. It analyzes patient data with features such as age, smoking habits, and symptoms. Data preprocessing, visualization, and performance evaluation ensure accurate predictions for early diagnosis.

Language: Jupyter Notebook - Size: 1.36 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 2 - Forks: 0

PathologyDataScience/MuTILs_Panoptic

Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs model and PanopTILs dataset. medRxiv 2022.01.08.22268814.

Language: Python - Size: 213 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 17 - Forks: 3

EIDOSLAB/torchstain

Stain normalization tools for histological analysis and computational pathology

Language: Python - Size: 2.52 MB - Last synced at: 2 days ago - Pushed at: 4 months ago - Stars: 140 - Forks: 26

TissueImageAnalytics/tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

Language: Python - Size: 505 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 425 - Forks: 89

mahmoodlab/MI-Zero

Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023

Language: Python - Size: 1.94 MB - Last synced at: 4 days ago - Pushed at: almost 2 years ago - Stars: 103 - Forks: 6

mahmoodlab/CONCH

Vision-Language Pathology Foundation Model - Nature Medicine

Language: Python - Size: 1.22 MB - Last synced at: 5 days ago - Pushed at: about 2 months ago - Stars: 355 - Forks: 28

mahmoodlab/UNI

Pathology Foundation Model - Nature Medicine

Language: Jupyter Notebook - Size: 6.94 MB - Last synced at: 5 days ago - Pushed at: about 2 months ago - Stars: 460 - Forks: 66

mahmoodlab/HIPT

Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

Language: Jupyter Notebook - Size: 740 MB - Last synced at: 5 days ago - Pushed at: about 1 year ago - Stars: 558 - Forks: 96

mahmoodlab/CLAM

Open source tools for computational pathology - Nature BME

Language: Python - Size: 45.8 MB - Last synced at: 5 days ago - Pushed at: 27 days ago - Stars: 1,304 - Forks: 416

liupei101/VLSA

[ICLR 2025] Interpretable Vision-Language Survival Analysis with Ordinal Inductive Bias for Computational Pathology

Language: Jupyter Notebook - Size: 12.2 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 36 - Forks: 3

AICAN-Research/FAST-Pathology

⚡ Open-source software for deep learning-based digital pathology

Language: C++ - Size: 81.2 MB - Last synced at: 2 days ago - Pushed at: 11 months ago - Stars: 134 - Forks: 27

MarvinLer/tcga_segmentation

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

Language: Python - Size: 63.1 MB - Last synced at: 5 days ago - Pushed at: almost 4 years ago - Stars: 134 - Forks: 34

dazhangyu123/ACMIL

Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification (ECCV2024)

Language: Python - Size: 67.5 MB - Last synced at: 5 days ago - Pushed at: 14 days ago - Stars: 90 - Forks: 11

Dana-Farber-AIOS/pathml

Tools for computational pathology

Language: Python - Size: 218 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 421 - Forks: 85

DIAGNijmegen/pathology-whole-slide-data

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

Language: Python - Size: 93.7 MB - Last synced at: 5 days ago - Pushed at: 6 months ago - Stars: 100 - Forks: 30

open-pathology/awesome-pathology

Awesome List of Digital and Computational Pathology Resources

Size: 174 KB - Last synced at: 5 days ago - Pushed at: 4 months ago - Stars: 52 - Forks: 3

jermmy19998/MMM

Repository forMulti-modal Mutual Mixer

Language: Python - Size: 39.5 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 1 - Forks: 0

dazhangyu123/AEM

AEM: Attention Entropy Maximization for Multiple Instance Learning based Whole Slide Image Classification

Language: Python - Size: 4.65 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 11 - Forks: 1

birkhoffkiki/DTR

The implementation of DTR

Language: Jupyter Notebook - Size: 3.35 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 4 - Forks: 0

lyndonchan/hsn_v1

HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)

Language: Jupyter Notebook - Size: 14.5 MB - Last synced at: 5 days ago - Pushed at: over 5 years ago - Stars: 90 - Forks: 23

mahmoodlab/HEST

Integrating histology and spatial transcriptomics - NeurIPS 2024

Language: Python - Size: 36.2 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 268 - Forks: 24

AICAN-Research/H2G-Net

🚀 H2G-Net: Segmentation of breast cancer region from whole slide images

Language: Jupyter Notebook - Size: 61.8 MB - Last synced at: 2 days ago - Pushed at: 6 months ago - Stars: 26 - Forks: 7

manuel-munoz-aguirre/PyHIST

A pipeline to segment tissue from the background in histological images

Language: Python - Size: 55.2 MB - Last synced at: 5 days ago - Pushed at: about 2 years ago - Stars: 69 - Forks: 13

Sbrussee/PathBench-MIL

PathBench-MIL: A comprehensive, flexible Benchmarking / AutoML framework for multiple instance learning in Histopathology

Language: Python - Size: 9.61 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 11 - Forks: 0

owkin/HistoSSLscaling

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

Language: Jupyter Notebook - Size: 6.69 MB - Last synced at: 11 days ago - Pushed at: over 1 year ago - Stars: 152 - Forks: 12

slideflow/slideflow

Powerful, open-source AI tools for digital pathology.

Language: Python - Size: 133 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 298 - Forks: 50

andreped/fast-stain-normalization

:star2: GPU-accelerated stain normalization command line tool

Language: Python - Size: 7.47 MB - Last synced at: 2 days ago - Pushed at: over 1 year ago - Stars: 20 - Forks: 2

TissueImageAnalytics/cerberus

One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification

Language: Python - Size: 217 KB - Last synced at: 5 days ago - Pushed at: 5 months ago - Stars: 88 - Forks: 11

Richarizardd/Self-Supervised-ViT-Path

Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)

Language: Jupyter Notebook - Size: 39.6 MB - Last synced at: 5 days ago - Pushed at: almost 3 years ago - Stars: 139 - Forks: 19

Peter554/StainTools 📦

Tools for tissue image stain normalisation and augmentation in Python 3

Language: Python - Size: 63 MB - Last synced at: 11 days ago - Pushed at: about 4 years ago - Stars: 331 - Forks: 109

birkhoffkiki/GPFM

The official implementation of GPFM

Language: Python - Size: 24.5 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 54 - Forks: 3

CielAl/torch-staintools

Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms

Language: Python - Size: 73.9 MB - Last synced at: 18 days ago - Pushed at: over 1 year ago - Stars: 29 - Forks: 4

sebastianffx/stainlib

Python 3 library for the augmentation & normalization of H&E images

Language: Jupyter Notebook - Size: 9.91 MB - Last synced at: 5 days ago - Pushed at: over 2 years ago - Stars: 54 - Forks: 8

konst-int-i/healnet

Multimodal fusion for heterogeneous biomedical data. NeurIPS 2024.

Language: Python - Size: 25.7 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 51 - Forks: 4

cpathology/NucleiSegHE

H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net

Language: Python - Size: 10.4 MB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 9 - Forks: 3

saadwazir/ReN-UNet

ReN-UNet - Rethinking the Nested U-Net Approach: Enhancing Biomarker Segmentation with Attention Mechanisms and Multiscale Feature Fusion - 5th International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2024) - (MICCAI Society Endorsed Event)

Language: Python - Size: 88.9 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

NeelKanwal/Equipping-Computational-Pathology-Systems-with-Artifact-Processing-Pipeline

computational-pathology-pipeline

Language: Python - Size: 190 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 2

Kan67/nature

Simple Tailwind CSS and JavaScript project, Nature.

Language: HTML - Size: 10.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

jhdsr01/Lung_Cancer_Prediction

This project predicts lung cancer risks using machine learning models like Random Forest, Logistic Regression, and SVM. It analyzes patient data with features such as age, smoking habits, and symptoms. Data preprocessing, visualization, and performance evaluation ensure accurate predictions for early diagnosis.

Language: Jupyter Notebook - Size: 1.36 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

carlpecardal/Lung_Cancer_Prediction

This project predicts lung cancer risks using machine learning models like Random Forest, Logistic Regression, and SVM. It analyzes patient data with features such as age, smoking habits, and symptoms. Data preprocessing, visualization, and performance evaluation ensure accurate predictions for early diagnosis.

Language: Jupyter Notebook - Size: 0 Bytes - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

georg-wolflein/good-features

Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"

Language: Jupyter Notebook - Size: 165 MB - Last synced at: 5 days ago - Pushed at: 9 months ago - Stars: 18 - Forks: 2

cjrobinson8/Complex-Wound-Analysis-using-AI

Repository for publication outlining a number of computational models for complex wound analysis in both mice and humans.

Size: 8.79 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

GeorgeBatch/dependency-mil

[ISBI 2024] Accurate Subtyping of Lung Cancers by Modelling Class Dependencies

Language: Python - Size: 599 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1

tuguiMAtei/Complex-Wound-Analysis-using-AI

Repository for publication outlining a number of computational models for complex wound analysis in both mice and humans.

Size: 1.95 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

bifold-pathomics/xMIL

xMIL: Insightful Explanations for Multiple Instance Learning in Histopathology

Language: Jupyter Notebook - Size: 29.3 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 12 - Forks: 2

jgamper/compay-syntax

:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

Language: Python - Size: 43.5 MB - Last synced at: 5 days ago - Pushed at: over 2 years ago - Stars: 55 - Forks: 1

uw-loci/collagen-fiber-metrics

Deep generative models for collagen fiber centerline segmentation and extraction in cancer tissue

Language: Jupyter Notebook - Size: 34.9 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 7 - Forks: 2

mahmoodlab/CPATH_demographics

Demographic bias in misdiagnosis by computational pathology models - Nature Medicine

Language: Python - Size: 1.04 MB - Last synced at: 5 days ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 2

zzbuzzard/PATHS

Code for PATHS: A Hierarchical Transformer for Efficient Whole Slide Image Analysis

Language: Python - Size: 44.7 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 5 - Forks: 1

georg-wolflein/pathology-foundation-models

List of pathology feature extractors and foundation models

Size: 41 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 83 - Forks: 8

dandyrilla/dandyrilla.github.io

Personal blog on computational biology and pathology

Language: SCSS - Size: 10.9 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

HKU-MedAI/cDPMIL

[ECCV'24] cDP-MIL: Robust Multiple Instance Learning via Cascaded Dirichlet Process

Language: Python - Size: 10.2 MB - Last synced at: 2 months ago - Pushed at: 8 months ago - Stars: 12 - Forks: 0

GeorgeBatch/active-data-enrichment

[MICCAI'2022] CaPTion workshop: Active Data Enrichment by Learning What to Annotate in Digital Pathology

Language: Jupyter Notebook - Size: 18.6 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 1

GeorgeBatch/LC25000-clean

[MICCAI'24 DEMI workshop] Evaluating Histopathology Foundation Models for Few-shot Tissue Clustering: an Application to LC25000 Augmented Dataset Cleaning

Language: Jupyter Notebook - Size: 3.78 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

mahdihosseini/ADP

Atlas of Digital Pathology for Deep Learning [CVPR2019]

Language: Python - Size: 81.1 KB - Last synced at: 5 days ago - Pushed at: almost 5 years ago - Stars: 23 - Forks: 5

HKU-MedAI/HIGT

[MICCAI'23] HIGT: Hierarchical Interaction Graph-Transformer for Whole Slide Image Analysis

Language: Python - Size: 460 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 26 - Forks: 1

jamesdolezal/biscuit

Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding

Language: Python - Size: 599 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 26 - Forks: 2

QuIIL/TQx Fork of anhtienng/TQx

Towards a text-based quantitative and explainable histopathology image analysis (MICCAI 2024)

Language: Python - Size: 237 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

BearCleverProud/MoME

Repository for Mixture of Multimodal Experts

Language: Python - Size: 857 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 7 - Forks: 0

srmedinac/APIC

Computational phenotyping used in the paper "AI Pathology Classifier Predicts Docetaxel Benefit in High-Risk Localized Prostate Cancer: RTOG 0521 Validation"

Language: Python - Size: 47.3 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

StonyBrookDB/igt-wsi

Repository for "Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification""

Size: 13.7 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

NeelKanwal/Vision-Transformers-for-Small-Histological-Datasets-Learned-Through-Knowledge-Distillation

Source code for paper: https://arxiv.org/pdf/2305.17370.pdf

Language: Python - Size: 37.1 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 1

NeelKanwal/Quantifying-the-effect-of-color-processing-on-blood-and-damaged-tissue-detection

Source code for paper: https://ieeexplore.ieee.org/abstract/document/9816283

Language: Python - Size: 12.4 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1

idso-fa1-pathology/.github

Welcome to IDSO-FA1-Pathology World!

Size: 3.91 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

MiriamAng/TilGenPro

Python-based pipeline for tiles generation and pre-processing from digitized histopathological images.

Language: Python - Size: 440 KB - Last synced at: 11 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 3

NeelKanwal/DeepKernelLearning

This repository contains code for paper: "Are you sure it’s an artifact? Artifact detection and uncertainty quantification in histological images."

Language: Python - Size: 14.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 1

ImagingDataCommons/idc-comppath-reproducibility

Classification of lung tumor slide images with the NCI Imaging Data Commons

Language: Jupyter Notebook - Size: 381 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

miccaiif/LNMNet

Official Pytorch Implementation of our new paper 'Predicting Lymph Node Metastasis from Primary Cervical Cancer Based on Deep Learning in Histopathological Images.'

Language: Python - Size: 5.9 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 0

yujota/elm-asap-pathology-format

Elm library providing encoder/decoder for automated slide analysis platform XML format (https://github.com/computationalpathologygroup/ASAP).

Language: Elm - Size: 32.2 KB - Last synced at: 2 months ago - Pushed at: about 5 years ago - Stars: 4 - Forks: 1

DeepMicroscopy/Cox_AMIL

Code for our BVM workshop submission "Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays"

Language: Jupyter Notebook - Size: 60.1 MB - Last synced at: 12 months ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 3

cwlkr/torchvahadane

Gpu accelerated vahadane stain normalization for Digital Pathology workflows.

Language: Python - Size: 80 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 2

PingjunChen/tissueloc

Whole Slide Digital Pathology Image Tissue Localization

Language: Python - Size: 22.2 MB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 44 - Forks: 12

PingjunChen/pyslide

Digital Pathology Whole Slide Image Analysis Toolbox

Language: Python - Size: 18.6 MB - Last synced at: 5 days ago - Pushed at: about 2 years ago - Stars: 48 - Forks: 8

liupei101/GraphLSurv

GraphLSurv: A Scalable Survival Prediction Network with Adaptive and Sparse Structure Learning for Histopathological Whole-Slide Images

Language: Jupyter Notebook - Size: 16.8 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 2

anhtienng/GPC

GPC: Generative and general pathology image classifier (MedAGI 2023)

Language: Python - Size: 3.83 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

rashindrie/ANSAC

Classification of whole-slide images based on tumor infiltrating lymphocyte grades using image-level labels

Language: Python - Size: 354 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

daangeijs/pathology-cell-density

A demonstration script for analyzing cell density in whole slide images (WSIs). This repository accompanies the article published on daangeijs.nl. The demo showcases how to compute cell density in detected tumor regions using WholeSlideData and GeoPandas.

Language: Jupyter Notebook - Size: 558 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

daangeijs/simple_wsi_viewer

A simple web application for for viewing and navigating pathology whole-slide-images in your browser.

Language: JavaScript - Size: 9.57 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 1

PathologyDataScience/HiPS

Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis

Language: Python - Size: 35.2 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

cpathology/LungEvolutionPathomics

Lung Preneoplasia Progression via Pathomics

Language: Python - Size: 18.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

lunit-io/ocelot23algo

OCELOT 2023: Cell Detection from Cell-Tissue Interaction

Language: Python - Size: 5.02 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 10 - Forks: 3

cpathology/Pyramidal-TIFF

Convert Slides/Images to Pyramidal TIFF Format

Language: Python - Size: 23.4 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 2

bianhao123/Mixed_supervision

MICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.

Language: Python - Size: 628 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 42 - Forks: 11

compbio-ai/openslide-bundle

A python package bundling the openslide C and python libraries for automated path management

Language: JavaScript - Size: 23.3 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

rikiyay/style-transfer-for-digital-pathology

Learning domain-agnostic visual representation for computational pathology using medically-irrelevant style transfer augmentation

Language: Python - Size: 107 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 20 - Forks: 7

TissueImageAnalytics/iguana

Interpretable Gland-Graph Networks

Language: Python - Size: 403 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 0

mahdihosseini/DARTS-ADP

Probeable DARTS with Application to Computational Pathology [ICCV2021]

Language: Python - Size: 15.5 MB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 1

uw-loci/gnn-pccp

Graph neural networks for PDAC vs CP in histology

Language: Jupyter Notebook - Size: 2.16 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

PingjunChen/LiverCancerSeg

PAIP2019: Liver Cancer Segmentation

Language: Python - Size: 222 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 31 - Forks: 10

PingjunChen/ThyroidRule

Rule-Based Thyroid Whole Slide Image Diagnosis

Language: Python - Size: 429 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 1

talhaqaiser/Computational-Pathology-Reading-List

Reading list for Computational Pathology

Size: 1.95 KB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 6 - Forks: 0

PingjunChen/ThyroidInteractive

Suspicious Regions-Based Whole Slide Image Analysis

Language: Python - Size: 4.09 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 2

jgamper/annotated-papers

Contains all research papers read since the end of July 2020 :+1:

Language: Python - Size: 804 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 2

talhaqaiser/Reinforcement-Learning-Resources

Reinforcement learning reading list (including medical image analysis papers )

Size: 1000 Bytes - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0

nauyan/PCAM-Pipeline

Language: Python - Size: 3.91 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

Related Keywords
computational-pathology 98 deep-learning 36 histopathology 32 digital-pathology 29 pathology 25 whole-slide-imaging 18 python 13 multiple-instance-learning 13 machine-learning 13 pytorch 12 weakly-supervised-learning 8 whole-slide-image 8 pathology-image 6 quantitative-pathology 6 medical-imaging 6 stain-normalization 5 histology 5 lung-cancer 5 foundation-model 5 segmentation 5 wsi 5 computer-vision 5 convolutional-neural-networks 5 breast-cancer 4 tensorflow 4 medical-image-analysis 4 mahmoodlab 4 self-supervised-learning 4 cell-segmentation 4 image-classification 3 image-segmentation 3 histopathology-images 3 survival-prediction 3 tcga-data 3 tissue-segmentation 3 tissue-analysis 3 transfer-learning 3 image-analysis 3 cell-classification 3 vision-transformer 3 camelyon16 3 medical-image-processing 3 image-processing 3 explainable-ai 3 svm 3 cell-analysis 3 cancer 3 tissue-microarray-analysis 3 bioimage-informatics 3 dataset 2 deeplearning 2 biomedical-image-processing 2 complex-wounds 2 collagen-fibers 2 bracs 2 tcga 2 representation-learning 2 whole-slide-images 2 vision-language-model 2 survival-analysis 2 data-efficient 2 biomedical-image-analysis 2 pathomics 2 camelyon17 2 keras 2 classification 2 wound 2 clustering 2 logistic-regression 2 retrieval 2 miccai2022 2 benchmark 2 wound-healing 2 algorithm-analysis 2 semantic-segmentation 2 gpu-acceleration 2 graph-transformer 2 tissue-classification 2 openslide 2 multimodal 2 stain-separation 2 histopathology-image-analysis 2 staintools 2 artifact-detection 2 vahadane 2 spatial-transcriptomics 2 cnn 2 decision-tree-classifier 2 nature-medicine 2 bioimage-analysis 2 gradientboosting 2 vision-language-pathology 2 deep-neural-networks 2 tumor-segmentation 2 unsupervised-learning 2 pretrained-weights 2 nuclei-segmentation 2 tumor-infiltrating-lymphocytes 2 xgboost 2 medicalimageanalysis 1