geometric-intelligence/cellgeometry

A web-based application for Cell Shape Analysis.

Language: Jupyter Notebook - Size: 54.3 MB - Last synced: 8 days ago - Pushed: 8 months ago - Stars: 2 - Forks: 0

qupath/qupath

QuPath - Bioimage analysis & digital pathology

Language: Java - Size: 93.5 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 962 - Forks: 267

RI-imaging/DryMass

manipulation and analysis of phase microscopy data

Language: Python - Size: 4 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 2 - Forks: 1

Kafri-Lab/Cell-Tracking

Track 2D cell motion and mitosis in time-lapse microscopy

Language: Matlab - Size: 4.21 MB - Last synced: 8 months ago - Pushed: over 6 years ago - Stars: 4 - Forks: 3

Kafri-Lab/Cell-t-SNE

Visualize similar cells on a 2D plot using t-SNE

Language: Jupyter Notebook - Size: 34.8 MB - Last synced: 8 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 1

suryaphysics/Cervical-Cancer-Cell-Nucleus-Segmentation

A small tool in python to read the bright-field image data and the phase image data recovered from a Digital holographic microscope (DHM) and segment the nuclei to calculate physical parameters like roughness and volume.

Language: Python - Size: 6.89 MB - Last synced: 8 months ago - Pushed: over 6 years ago - Stars: 2 - Forks: 4

AllenCellModeling/torch_integrated_cell

Language: Jupyter Notebook - Size: 9.95 MB - Last synced: over 1 year ago - Pushed: almost 6 years ago - Stars: 45 - Forks: 9

hipa-org/HIPA-GO 📦

GO Webapp for the HIPA Tool

Language: Go - Size: 15.6 MB - Last synced: over 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

ZELLMECHANIK-DRESDEN/ShapeOut 📦

Shape-Out has been superseded by Shape-Out 2.

Language: Python - Size: 5.55 MB - Last synced: 1 day ago - Pushed: almost 4 years ago - Stars: 5 - Forks: 5

AllenCellModeling/pytorch_integrated_cell

Integrated Cell project implemented in pytorch

Language: Python - Size: 125 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 40 - Forks: 10

swalesch/CSVFileParser

Convert experiment dataset of cells into one csv format.

Language: Java - Size: 62.5 KB - Last synced: over 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

hipa-org/HIPA-CLI

High Intensity Peak Analysis for detecting High Intensity Cells

Language: Python - Size: 46.4 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

hipa-org/HIPA-GUI

HIPA Tool GUI

Language: C# - Size: 163 KB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

InsightSoftwareConsortium/ITKBioCell

This remote module contains classes related to segmentation of biological cells. It has classes to represent cells' shape, color, and growth state. It also has classes to represent a cell genome, whose expression is modeled by differential equations.

Language: C++ - Size: 6.6 MB - Last synced: 2 months ago - Pushed: about 2 years ago - Stars: 3 - Forks: 4

SecureAIAutonomyLab/cell-state-dynamics

Deep Learning based segmentation and tracking to understand the dynamics and morphology of cells over time.

Language: Python - Size: 2.93 KB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0