tripal/tripal

The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.

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ESIPFed/bds-primer-best-practices

A working directory for the best practices documents being developed by the Biological Data Standards Cluster as companion products to the Biological Data Standards Primer.

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cauliyang/DeepBioP

Deep Learning Processing Library for Biological Data

Language: Rust - Size: 3.26 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 4 - Forks: 0

Albi1999/Protein_Domain_Family_Characterization Fork of maloooon/Protein_Domain_Family_Characterization

Academic group project for the Biological Data Course of the MSc in Data Science @ UniPD 2024/2025

Language: Jupyter Notebook - Size: 85.9 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 0

biodosetools-team/biodosetools

A tool to perform all different statistical tests and calculations needed by Biological Dosimetry Laboratories

Language: R - Size: 9.21 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 5 - Forks: 3

thackl/gggenomes

A grammar of graphics for comparative genomics

Language: R - Size: 112 MB - Last synced at: 22 days ago - Pushed at: 2 months ago - Stars: 690 - Forks: 68

adabyt/scrnaseq_analysis_project

Single-cell RNA-seq analysis project for learning purposes.

Language: Jupyter Notebook - Size: 16.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

biotorrents/gazelle

BioTorrents.de’s version of Gazelle

Language: PHP - Size: 21.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 28 - Forks: 4

open-genes/open-genes-frontend

Open Genes is a database of human genes associated with aging and lifespan.

Language: TypeScript - Size: 18.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 11

cellrex/cellrex

Platform for managing biological research data.

Language: Python - Size: 780 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 3 - Forks: 1

chriscant/mkdistmaps

Command line tool to make species distribution maps from species records with GB or Irish grid references.

Language: JavaScript - Size: 9.42 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

unmatched78/mentrual_cycle_predictor

In this project we tested various learning models for a reliable women menstraul cycle accurate prediction overtime, we have used ARISTAMA, Random forest, Long-term short memeory and many more, we used synthetic data for quick analyse

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patricksferraz/pcr-analysis

Machine learning-powered PCR data analysis toolkit featuring transfer learning, time series forecasting, and SHAP-based model interpretability. Built with TensorFlow and scikit-learn for advanced biological data processing.

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LimaRAF/plantR

An R Package for Managing Species Records from Biological Collections

Language: R - Size: 404 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 19 - Forks: 6

MaxValue/Terpene-Profile-Parser-for-Cannabis-Strains

Parser and database to index the terpene profile of different strains of Cannabis from online databases

Language: Python - Size: 21.4 MB - Last synced at: 5 months ago - Pushed at: over 2 years ago - Stars: 118 - Forks: 18

ropensci/worrms

World Register of Marine Species R client

Language: R - Size: 369 KB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 27 - Forks: 9

Code-JL/DNA-Sequence-Analyzer

A robust Python-based bioinformatics tool for comprehensive DNA sequence analysis and manipulation.

Language: Python - Size: 7.81 KB - Last synced at: 3 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

miguel-porto/homem-luzula

Field data collecting app for android, optimized for conducting biological inventories at high speed

Language: Java - Size: 628 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0

vinisalazar/BioProv

A provenance library for bioinformatics workflows 🧬 🔀 📝

Language: Python - Size: 12.4 MB - Last synced at: 3 days ago - Pushed at: almost 4 years ago - Stars: 14 - Forks: 1

alecruces/MEBMedBio

Utilizing cutting-edge optimization methods to detect anomalies in medical and biological datasets

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mahossam/DNA-Transcription-Factor-Binding-Prediction

DNA Transcription Factor Binding Prediction (Self-learning Project)

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shreyas-a-s/oneclick-website-deployer

Bash script to install and setup a basic working drupal website with tripal module installed and activated.

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James-2879/microbiome_analysis

Collection of tools to visualize microbiological abundance data for dissertation.

Language: R - Size: 1.02 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

fabbio00/Biological_Data_Access_Guide_BDAG.ipynb

This mini-guide contains some simple practical examples of data retrieval for main biological data archives sites. In addition, specific sections of the notebook have been devoted to collecting, summarizing, and clarifying the available documentation.

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aminkhod/Drug-Target_Interaction_prediction

M.Sc-final-project

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tripal/tripal_genetic

Extends core Tripal with support focused on genotypic data, genetic markers, sequence variants, etc.

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darioelias/TEGA

TEGA (Tools for Evolutionary and Genetic Analysis) is a WEB-based standalone software (WEB-based platform) designed for the management of biological data, with emphasis on population genetics studies. This platform is free and any research group can install it in their institute, and modify it.

Language: Java - Size: 39.5 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

ace19-dev/2018-Data-Science-Bowl

Kaggle Competitions: Find the nuclei in divergent images to advance medical discovery

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biothings/biothings_explorer_web_old 📦

Web Interface for BioThings Explorer

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gfbio/GFBio-portal-dev

Source code of all GFBio components in the portal

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tsievert/2nd-hand-fear-data

Secondhand horror: Effects of direct and indirect predator cues on behavior and reproduction of the bank vole - Dataset

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open-genes/open-genes-api

Open Genes API provides access to research data collected for the genes associated with aging

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OpenDataAnalytics/resonanteco

Scalable Data Management for Biological and Environmental Data

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raymonwu/Managing_Your_Biological_Data_with_Python_3

<<Managing Your Biological Data with Python>> wirtten in Python 3

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mrjng/lab-modules 📦

Scripts to parse commonly used biological data format and to modularize commonly used functions or classes

Language: Python - Size: 210 KB - Last synced at: about 1 month ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

swalesch/CSVFileParser

Convert experiment dataset of cells into one csv format.

Language: Java - Size: 62.5 KB - Last synced at: over 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0

marceelrf/enrichHarmonizome

Provide suport to access and download data through Hamonizome API

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sokolmarek/hrv-correction

Heart rate variability time series artifact correction

Language: MATLAB - Size: 132 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 1

aintzevi/feature-selection-for-biological-data

Implementation of feature selection methods for biological data

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anilozdemir/Bee-DCD

Repo for Bees outperform vertebrates in a delayed conditional learning task

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krisjuune/microplate-data

A MATLAB toolbox for culture experiments to monitor cells & obtain/plot growth rate data

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SmartBioTech/BioArInEO-API

API for BioArInEO project

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gfbio/gfbio-portal

The GFBio Web Portal for Release

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H-C-Orsted-Gym/DNA-RNA-Converter

This is a simple tool to convert your DNA code into RNA, and it also gives you the name of the protein.

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haradama/ofxBio

openFrameworks addon for reading biological data

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drostlab/biodbretrievr

Retrieve and efficiently index entire biological sequence databases

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sankarshan-bhat/graph-clustering

This repository provides classic clustering algorithms and various internal cluster quality validation metrics and also visualization capabilities to analyse the clustering results

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equipe22/BioQuality

Language: R - Size: 374 KB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

snailsnap/mollex

Language: C++ - Size: 67.4 KB - Last synced at: over 2 years ago - Pushed at: about 7 years ago - Stars: 2 - Forks: 1

ZexuanTHU/deep-bi

deep-bi

Language: Python - Size: 24.4 KB - Last synced at: 2 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0