DanielRivasMD/genomic_structures

Library for interacting with genomic structures, namely mobile elements and structural variants.

Language: Rust - Size: 242 KB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 1 - Forks: 0

cajigas/granulifera_selection

This project studies the evolution of color polymorphism in the granular poison frog Oophaga granulifera

Language: Shell - Size: 116 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0

MRCIEU/opengwas-api

API for MRC-IEU OpenGWAS

Language: Python - Size: 21.5 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 5 - Forks: 2

TeddYenn/population_genomics-edamame

Population Genomics: For Selection Footprints in Edamame

Language: TeX - Size: 2.32 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

Sh1ne111/KMERIA

A KMER-based genome-wIde Assocation testing approach on polyploids

Language: C - Size: 16.3 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 2 - Forks: 0

aprilweilab/grgl

Genotype Representation Graph Library

Language: C++ - Size: 950 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 33 - Forks: 2

TeddYenn/ShiNyP

An Interactive Shiny-Based Platform for Genome-Wide SNP Analysis and Visualization

Language: R - Size: 22.6 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 5 - Forks: 0

Zilong-Li/vcfppR

The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049

Language: C - Size: 13.6 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 15 - Forks: 3

CBIIT/nci-webtools-dceg-linkage

LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.

Language: Python - Size: 17.4 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 23 - Forks: 11

kkokay07/pq-genetics

Repository for population genetics and quantitative genetics metrics implementarion and visualization

Language: Jupyter Notebook - Size: 198 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 1 - Forks: 0

belowlab/compadre

IBD-based pedigree generation software, built on top of and maximizing utility from the tools PRIMUS and ERSA

Language: Perl - Size: 2.57 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0

BGI-shenzhen/VCF2Dis

VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format

Language: C++ - Size: 8.17 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 84 - Forks: 19

BenjaminPeter/admixfrog

Language: Python - Size: 11.5 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 7 - Forks: 4

sanjaynagi/rna-seq-pop

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

Language: Jupyter Notebook - Size: 99.5 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 18 - Forks: 9

merenlab/anvio

An analysis and visualization platform for 'omics data

Language: Python - Size: 745 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 460 - Forks: 146

nf-core/tumourevo

Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)

Language: Nextflow - Size: 2.48 MB - Last synced at: 7 days ago - Pushed at: 3 months ago - Stars: 14 - Forks: 5

nf-core/eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

Language: Nextflow - Size: 64.1 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 161 - Forks: 83

molpopgen/fwdpy11

Forward-time simulation in Python using fwdpp

Language: C++ - Size: 31.9 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 30 - Forks: 6

aprilweilab/mrpast

Demographic inference from Ancestral Recombination Graphs (ARGs)

Language: C++ - Size: 333 KB - Last synced at: 15 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0

grunwaldlab/poppr

🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction

Language: R - Size: 157 MB - Last synced at: 18 days ago - Pushed at: 11 months ago - Stars: 70 - Forks: 27

royfrancis/pophelper

An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

Language: R - Size: 49.7 MB - Last synced at: 16 days ago - Pushed at: over 1 year ago - Stars: 148 - Forks: 37

EricArcher/strataG

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

Language: HTML - Size: 26.7 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 25 - Forks: 12

lczech/genesis

A library for working with phylogenetic and population genetic data.

Language: C++ - Size: 14.6 MB - Last synced at: 8 days ago - Pushed at: 10 days ago - Stars: 61 - Forks: 12

tschuelia/Pandora

Uncertainty estimation toolkit for dimensionality reduction on population genetics data.

Language: Python - Size: 2.78 MB - Last synced at: 7 days ago - Pushed at: 21 days ago - Stars: 10 - Forks: 1

knausb/vcfR

Tools to work with variant call format files

Language: R - Size: 20.9 MB - Last synced at: 18 days ago - Pushed at: about 2 months ago - Stars: 257 - Forks: 53

moiexpositoalonsolab/grenepipe

A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.

Language: Python - Size: 99.9 MB - Last synced at: 9 days ago - Pushed at: 24 days ago - Stars: 96 - Forks: 22

molpopgen/demes-rs

rust tools for the demes ecosystem

Language: Rust - Size: 680 KB - Last synced at: 19 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 1

kr-colab/diploSHIC

feature-based deep learning for the identification of selective sweeps

Language: Python - Size: 22.7 MB - Last synced at: 16 days ago - Pushed at: about 1 month ago - Stars: 54 - Forks: 14

jgx65/hierfstat

the hierfstat package

Language: HTML - Size: 1010 KB - Last synced at: 2 days ago - Pushed at: 5 months ago - Stars: 24 - Forks: 13

cjabradshaw/demo-genetic

Code for SLiM 4.0 demo-genetic models examining the population effects of genetic rescue

Language: R - Size: 16.7 MB - Last synced at: 27 days ago - Pushed at: 28 days ago - Stars: 0 - Forks: 1

lh3/psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

Language: C - Size: 97.7 KB - Last synced at: 21 days ago - Pushed at: over 2 years ago - Stars: 163 - Forks: 60

zkamvar/dissertation

Zhian Kamvar's Ph. D. dissertation from Oregon State University

Language: TeX - Size: 129 MB - Last synced at: 2 days ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 2

lczech/grenedalf

Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

Language: C++ - Size: 19.2 MB - Last synced at: 8 days ago - Pushed at: 3 months ago - Stars: 40 - Forks: 3

isaacovercast/gimmeSAD

Joint modelling of abundance and genetic diversity. An integrated model of population genetics and community ecology.

Language: Jupyter Notebook - Size: 37.5 MB - Last synced at: 15 days ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

MoellerLabPU/AlleleFlux

Scripts for population genetic analyses on large number of MAGs

Language: Python - Size: 255 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 1

royfrancis/pophelperShiny

Interactive interface for pophelper using shiny web framework.

Language: R - Size: 2.5 MB - Last synced at: 21 days ago - Pushed at: over 4 years ago - Stars: 6 - Forks: 0

Zilong-Li/vcfpp

a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.

Language: C++ - Size: 1.95 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 22 - Forks: 3

bacpop/bacpop-website

Code for group website

Language: HTML - Size: 47.8 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 7

fengcong3/HAPPE

A tool to visualize the haplotype pattern and various information in excel.

Language: Python - Size: 12.3 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 18 - Forks: 0

jaspervrugt/AMALGAM

Multi-criteria optimization using multimethod adaptive search in MATLAB and Python

Language: MATLAB - Size: 14.6 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

bacpop/PopPUNK

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

Language: Python - Size: 116 MB - Last synced at: 16 days ago - Pushed at: 28 days ago - Stars: 97 - Forks: 20

AstraBert/diyabc-support-tutorial

DIYABC support tutorial from my experience

Size: 592 KB - Last synced at: 5 days ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

stephenturner/kgp

1000 Genomes Project Metadata R Package

Language: R - Size: 1000 KB - Last synced at: 8 days ago - Pushed at: over 2 years ago - Stars: 20 - Forks: 4

jeanlain/STRyper

A macOS application for microsatellite genotyping using capillary sequencing data.

Language: Objective-C - Size: 23 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

SchriderLab/Timesweeper

Python package for detecting positive selective sweeps using time-series genomics sampling data.

Language: Python - Size: 5.17 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 19 - Forks: 2

Zilong-Li/PCAone

Fast, Accurate and Memory-Efficient Principal Component Analysis All in One

Language: C++ - Size: 6.42 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 45 - Forks: 3

bodkan/admixr

An R package for reproducible and automated ADMIXTOOLS analyses

Language: R - Size: 13.1 MB - Last synced at: 1 day ago - Pushed at: 2 months ago - Stars: 29 - Forks: 9

Uzezi93/Pleiotropy-and-Local-Adaptation-Silverleaf-Sunflower

Analysis pipeline to examine how gene pleiotropy influences local adaptation in Silverleaf Sunflowers

Language: R - Size: 13 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

TeddYenn/ShiNyP_Test

An Interactive Shiny-Based Platform for Genome-Wide SNP Analysis and Visualization

Language: R - Size: 8.79 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 2 - Forks: 0

Awale-Abdi/Anthromadness_ANA_post

Repository dedicated to the R scripts, visualizations and other files I created via R code or editing tools such as Inkscape related to one of my blog posts on Anthromadness.

Language: HTML - Size: 17.5 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

chasewnelson/SNPGenie

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

Language: Perl - Size: 876 KB - Last synced at: 29 days ago - Pushed at: over 1 year ago - Stars: 111 - Forks: 37

SamDonohoo/Elimia-Population-Genomics

Scripts and command line from study on spring-obligate pleurocerid snails in Alabama.

Language: R - Size: 131 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

DanielRivasMD/Chapulin

Caught on the jump! Next-generation genomic mobile element and structural variant identification tool.

Language: Rust - Size: 1.25 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

kr-colab/locator

deep learning prediction of geographic location from individual genome sequences

Language: Python - Size: 12.9 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 46 - Forks: 18

V-Z/course-r-mol-data

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.

Language: TeX - Size: 1.46 GB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 8 - Forks: 4

bodkan/ku-popgen2022

Lecture notes and materials on simulations for the 2022 popgen course at Copenhagen University

Language: HTML - Size: 132 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 8 - Forks: 3

esteinig/netviewr

Mutual nearest neighbor graphs for population structure inference and visualization :octopus:

Language: Rust - Size: 2.1 MB - Last synced at: 24 days ago - Pushed at: 6 months ago - Stars: 15 - Forks: 2

wilsonfrantine/ggrelated

Plot genetic relatedness estimators using R and ggplot2

Language: R - Size: 10.7 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

ChiaraDuijser/host-symbiont_interactions_environmental_gradient

R code for reproducing analysis and figures of Pocillopora host-symbiont interactions along an extreme environmental gradient

Size: 211 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

ahmedmoustafa/genetic-ancestry

Genetic Ancestry

Language: Jupyter Notebook - Size: 13.9 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

lightning-auriga/interpolate-genetic-position

Use reference genetic map to interpolate genetic position for a query set of variants

Language: C++ - Size: 213 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

pdimens/2022-Tatlanticus_popgen 📦

Repository associated with the publication: Weak range-wide population structure in the blackfin tuna (Thunnus atlanticus) revealed by analysis of genome-wide SNPs

Language: Jupyter Notebook - Size: 117 MB - Last synced at: 23 days ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1

vsudbrack/vsudbrack.github.io

My personal homepage

Language: SCSS - Size: 78.3 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 1

pblischak/polyploid-genotyping

SNP genotyping in polyploids

Language: C++ - Size: 16.9 MB - Last synced at: 11 days ago - Pushed at: over 4 years ago - Stars: 16 - Forks: 3

not-a-feature/tajimas_d

Compute the Tajima's-D, Pi-Estimator or Watterson-Estimator for multiple sequences.

Language: Python - Size: 104 KB - Last synced at: 22 days ago - Pushed at: 12 months ago - Stars: 7 - Forks: 0

emiya52/Estimating-Population-Genetic-Parameters-Using-Neural-Networks-and-Genetic-Simulations

Estimating Population Genetic Parameters Using Neural Networks and Genetic Simulations

Size: 162 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

GiatrasKon/Chromosome11-VariantCalling-GATK

A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.

Language: R - Size: 10.2 MB - Last synced at: 20 days ago - Pushed at: 5 months ago - Stars: 0 - Forks: 1

V-Z/structure-sum

Script to summarize the results from several structure runs

Language: R - Size: 28.3 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

precimed/mixer

Causal Mixture Model for GWAS summary statistics

Language: C - Size: 107 MB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 65 - Forks: 18

stephenslab/ldshrink

ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium

Language: C++ - Size: 73.3 MB - Last synced at: 1 day ago - Pushed at: about 4 years ago - Stars: 12 - Forks: 1

alek0991/iSAFE

Pinpoints the mutation favored by selection

Language: Python - Size: 2 MB - Last synced at: 2 months ago - Pushed at: over 3 years ago - Stars: 33 - Forks: 11

projectglow/glow

An open-source toolkit for large-scale genomic analysis

Language: Scala - Size: 96.7 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 272 - Forks: 111

BiomedSciAI/Geno4SD

An python omics data toolkit for the analysis across biological scales

Language: Jupyter Notebook - Size: 78.1 MB - Last synced at: 16 days ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 1

hernanmd/STRUCTUREPipelines

Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)

Language: Shell - Size: 29.3 KB - Last synced at: 1 day ago - Pushed at: over 4 years ago - Stars: 10 - Forks: 1

cgoliver/RNA-Popgen-Notebook

Jupyter notebook for RNA evolutionary algorithm and subsequent population genetics and BioPython tools.

Language: Jupyter Notebook - Size: 206 KB - Last synced at: 15 days ago - Pushed at: almost 9 years ago - Stars: 6 - Forks: 1

vlatan/population-crash

Gene Drive (CRISPR) population crash simulation.

Language: Python - Size: 184 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

Karim-Mane/mpbr

Population Genomics Analysis for Plasmodium falciparum

Language: R - Size: 84.9 MB - Last synced at: 9 days ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

starskyzheng/panpop

Application of pan-genome for population

Language: Perl - Size: 62 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 93 - Forks: 8

gtonkinhill/rhierbaps

rhierbaps: R implementation of hierBAPS

Language: R - Size: 1.63 MB - Last synced at: 5 days ago - Pushed at: almost 4 years ago - Stars: 34 - Forks: 3

aritra90/CluStrat

Structure informed clustering based population structure correction strategy

Language: Jupyter Notebook - Size: 7.41 MB - Last synced at: 14 days ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 2

gausec/KingRailPopGen

This repository contains code related to a conservation genomics project focused on the king rail, a threatened marsh bird.

Language: Shell - Size: 12.8 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

cpatarroyo/agrostatistics

R library for the analysis of partially clonal populations of polyploid individuals

Language: R - Size: 86.9 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

HartreeY/RESK

A set of programs in Julia designed to efficiently simulate range expansions.

Language: Jupyter Notebook - Size: 229 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 0

mitobench/mitoBench

The mitochondrial workbench

Language: Java - Size: 197 MB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 8 - Forks: 0

andrewthometz/PopGen_of_WI_Brook_Trout

I conducted a large-scale population genetics survey to evaluate measures of genetic diversity, hatchery ancestry, and spatial genetic structure for over 60 wild brook trout populations across the state of Wisconsin.

Language: R - Size: 128 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

Zilong-Li/phaseless

Imputation and Admixture for lcWGS in one goal

Language: C++ - Size: 12.8 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 2 - Forks: 0

jeffersonfparil/poolgen

Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

Language: Rust - Size: 35.8 MB - Last synced at: 9 days ago - Pushed at: 8 months ago - Stars: 3 - Forks: 0

gMetapop/gMetapop Fork of garniergere/gMetapop

Forward population genetics simulation software with an intuitive GUI

Language: R - Size: 261 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0

Sendrowski/PhaseGen

Computation and inference on exact solutions of coalescent distributions under diverse demographic scenarios.

Language: Python - Size: 16.9 MB - Last synced at: 9 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

kfarleigh/PopGenHelpR

PopGenHelpR is an R package that estimates commonly used population genomic statistics and generates publication quality figures.

Language: R - Size: 14.6 MB - Last synced at: 16 days ago - Pushed at: 9 months ago - Stars: 3 - Forks: 0

mytechnotalent/Population-of-all-US-Cities-2024

This notebook uses regression modeling to predict the annual population change of US cities based on their population in 2024 and 2020, population density, and area.

Language: Jupyter Notebook - Size: 205 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

remytuyeras/HaploDynamics

A python library to develop genomic data simulators

Language: Python - Size: 1.01 MB - Last synced at: 26 days ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

EgorLappo/rustwf

Wright-Fisher-type simulations in Rust

Language: Rust - Size: 39.1 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

atw15/Lane-Snapper-Genetic-Connectivity-Analysis

This repository contains R code for my analysis of the genetic connectivity of Lane Snapper (Lutjanus synagris) across the Gulf of Mexico, the southeastern U.S. coast, and Belize. It includes data filtering, population structure analysis, Hardy-Weinberg equilibrium testing, and gene flow estimation, essential for fisheries management.

Language: R - Size: 19.5 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

polyactis/pymodule

A repo that contains miscellaneous Python/C++ modules/programs, a standalone Python module 'palos' by the yfish group (can be installed by pip).

Language: Python - Size: 12.4 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

AI-sandbox/neural-admixture

Rapid population clustering with autoencoders

Language: Python - Size: 1.61 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 52 - Forks: 8

arzwa/Sewall

Forward population genetics simulation and numerical approximations for multilocus mainland-island and finite-island models

Language: Julia - Size: 93.8 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

ldgh/Genotype-Imputation-public

Public description of LDGH Genotype Imputation v.2. pipeline developed in Phyton by Thiago Peixoto Leal, with the collaboration by Nathalia M. Araujo, Marilia Scliar and Ricardo Lyra. The user may choose to use SHAPEIT2 or SHAPEIT4 for haplotype inferences, and IMPUTE2 or IMPUTE4 for imputation. For further details or if you are interested in using it, please contact Ricardo Lyra ([email protected]).

Size: 53.7 KB - Last synced at: 10 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

zhuochenbioinfo/3KRG-HAP

Haplotype marker based on 3,000 Rice Genomes for subpopulation inference

Language: Perl - Size: 39 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 2

connor122721/drosophila_bottleneck_simulations

Simulate overwintering bottlenecks in wild fly populations

Language: R - Size: 105 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0