GitHub topics: clonality
grunwaldlab/poppr
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
Language: R - Size: 158 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 71 - Forks: 26
PSBioinfo/AIRR-pipeline
Minimal immune repertoire analysis pipeline using Change-O data to calculate clone diversity metrics (Shannon, Simpson) and visualize B-cell clonal distributions. Built in R.
Language: R - Size: 188 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
zkamvar/dissertation
Zhian Kamvar's Ph. D. dissertation from Oregon State University
Language: TeX - Size: 129 MB - Last synced at: 6 days ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 2
enricvercher/Analisis_single_cell_BCR
Single-cell transcriptomic and B-lymphocyte repertoire analysis with R (Seurat)
Language: Shell - Size: 141 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
cpatarroyo/agrostatistics
R library for the analysis of partially clonal populations of polyploid individuals
Language: R - Size: 86.9 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
Yonsei-TGIL/CLEMENT
Genomic decomposition and reconstruction of non-tumor diploid subclones
Language: Jupyter Notebook - Size: 35.8 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
dvav/clonosGP
A statistical approach for clonal deconvolution in cancer using longitudinal NGS data
Language: Jupyter Notebook - Size: 1.86 MB - Last synced at: about 12 hours ago - Pushed at: about 5 years ago - Stars: 7 - Forks: 0
AlexanderKononov/NGS-emulator
Detail WGS data simulation
Language: Python - Size: 2.54 MB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0
FunGeST/Palimpsest
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
Language: R - Size: 58.2 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 67 - Forks: 19
asalavaty/AutoClone
Calculation of clonality (distances) based on color profiles (Saturation, Hue, and Lightness values)
Language: R - Size: 2 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0
AAlhendi1707/PhylogicNDT_Docker
PhylogicNDT dockcer for clonal evolution analysis
Language: Shell - Size: 95.7 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
Subhayan18/CRUST
R package for clonal deconvolution
Language: R - Size: 12.1 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1
davismcc/fibroblast-clonality
Website for the fibroblast clonality project conducted at EMBL-EBI and the Wellcome Sanger Institute ca 2017-2019.
Language: R - Size: 94.8 MB - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 5 - Forks: 3
