GitHub topics: clonal-analysis
chenweng1991/redeemR
R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.
Language: Jupyter Notebook - Size: 17.2 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 13 - Forks: 5
Qile0317/APackOfTheClones
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
Language: R - Size: 178 MB - Last synced at: 2 days ago - Pushed at: 6 months ago - Stars: 17 - Forks: 2
AntonioDeFalco/SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
Language: HTML - Size: 63 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 100 - Forks: 25
phipsonlab/CloneDetective
R Package for interrogating clonal data
Language: R - Size: 1.84 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
asalavaty/AutoClone
Calculation of clonality (distances) based on color profiles (Saturation, Hue, and Lightness values)
Language: R - Size: 2 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
