Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: scrna-pipeline

AntonioDeFalco/SCEVAN

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

Language: HTML - Size: 62.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 80 - Forks: 22

zhanghao-njmu/SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

Language: R - Size: 788 MB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 284 - Forks: 54

OlivierRaineteauSBRI/scRNASeq

Repo linked to our recent publication in Science Advances

Language: HTML - Size: 5.66 GB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

mckellardw/scMuscle

The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data

Language: HTML - Size: 96.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 7 - Forks: 2

luglilab/SP025_Analysis

Integration analysis with Scanpy and scRNAseq TME from blueprint

Language: Jupyter Notebook - Size: 255 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

Related Keywords
scrna-pipeline 5 scrna-seq-analysis 5 scrna-seq 3 seurat-objects 2 single-cell 2 seurat 2 scanpy 2 scrna-seq-data 2 single-cell-genomics 1 single-cell-omics 1 single-cell-pipeline 1 single-cell-rna-seq 1 single-cell-sequencing 1 biology-project 1 brain 1 scrnaseq-data 1 scrnaseq-datasets 1 spatial-analysis 1 spatial-data 1 spatial-data-analysis 1 spatial-transcriptomics 1 transcriptomics 1 visium 1 scrnaseq 1 tutorial 1 aneuploidy 1 clonal-analysis 1 clonal-evolution 1 copy-number-variation 1 copynumber 1 microenvironment 1 subclonal-deconvolution 1 subclone-identification 1 tumor-classification 1 tumor-evolution 1 tumor-heterogeneity 1 anndata 1 scatac-seq 1 shiny-app 1 shiny-apps 1 shinyapps 1 single-cell-analysis 1 single-cell-atac-seq 1