GitHub topics: single-cell-sequencing

Repositories

pwwang/scplotter

scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.

Language: R - Size: 82.4 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 144 - Forks: 18

jaydu1/VITAE

Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior

Language: Jupyter Notebook - Size: 835 MB - Last synced at: 13 days ago - Pushed at: about 1 month ago - Stars: 27 - Forks: 8

stemangiola/tidySingleCellExperiment

Brings SingleCellExperiment objects to the tidyverse

Language: R - Size: 41.7 MB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 36 - Forks: 10

single-cell-genetics/MQuad

Tool for modelling of mitochondrial heteroplasmy

Language: Python - Size: 7.72 MB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 16 - Forks: 8

zhanghao-njmu/SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

Language: R - Size: 788 MB - Last synced at: 10 months ago - Pushed at: 11 months ago - Stars: 315 - Forks: 66

fu-jono-283/eval-multi-tumour-evo

Evaluating the Use of Bulk and Single-Cell Sequences in Phylogenetic Analyses of Multi-tumour Evolution

Language: HTML - Size: 10.9 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

coldham10/SCarborSNV

SCarborSNV is an efficient algorithm for phylogeny aware genotyping of single cell genomes, using dynamic programming and neighbor joining.

Language: C - Size: 25.3 MB - Last synced at: 12 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

statgen/popscle

A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools

Language: C++ - Size: 957 KB - Last synced at: 3 months ago - Pushed at: almost 4 years ago - Stars: 43 - Forks: 16

paulranum11/SPLiT-Seq_demultiplexing

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

Language: Python - Size: 6.83 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 25 - Forks: 9

rezakj/scSeqR

This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.

Language: R - Size: 158 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 16 - Forks: 3

dhivyaa-6/Miscellaneous-R-Scripts

Language: R - Size: 143 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

p4rkerw/Wilson_Muto_NComm_2022

Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq

Language: R - Size: 815 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 8 - Forks: 2

resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.

Language: Jupyter Notebook - Size: 7.45 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 8 - Forks: 3