Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: single-cell-sequencing
single-cell-genetics/MQuad
Tool for modelling of mitochondrial heteroplasmy
Language: Python - Size: 7.71 MB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 14 - Forks: 9
stemangiola/tidySingleCellExperiment
Brings SingleCellExperiment objects to the tidyverse
Language: R - Size: 41.2 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 34 - Forks: 7
jaydu1/VITAE
Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior
Language: Jupyter Notebook - Size: 830 MB - Last synced at: 12 days ago - Pushed at: about 2 months ago - Stars: 25 - Forks: 7
fu-jono-283/eval-multi-tumour-evo
Evaluating the Use of Bulk and Single-Cell Sequences in Phylogenetic Analyses of Multi-tumour Evolution
Language: HTML - Size: 10.9 MB - Last synced at: 29 days ago - Pushed at: 30 days ago - Stars: 0 - Forks: 0
coldham10/SCarborSNV
SCarborSNV is an efficient algorithm for phylogeny aware genotyping of single cell genomes, using dynamic programming and neighbor joining.
Language: C - Size: 25.3 MB - Last synced at: about 1 month ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
statgen/popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
Language: C++ - Size: 957 KB - Last synced at: about 2 months ago - Pushed at: about 3 years ago - Stars: 43 - Forks: 15
zhanghao-njmu/SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Language: R - Size: 788 MB - Last synced at: 3 months ago - Pushed at: 4 months ago - Stars: 284 - Forks: 54
paulranum11/SPLiT-Seq_demultiplexing
An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
Language: Python - Size: 6.83 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 25 - Forks: 9
rezakj/scSeqR
This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.
Language: R - Size: 158 MB - Last synced at: 8 months ago - Pushed at: over 2 years ago - Stars: 16 - Forks: 3
dhivyaa-6/Miscellaneous-R-Scripts
Language: R - Size: 143 KB - Last synced at: 8 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
p4rkerw/Wilson_Muto_NComm_2022
Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq
Language: R - Size: 815 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 2
lab-conrad/resVAE
resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.
Language: Jupyter Notebook - Size: 7.45 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 3
Griffan/popscle
(NOTE:This is development fork, please refer to official repo at statgen:https://github.com/statgen/popscle) Freemuxlet methods and auxilary tools
Language: C++ - Size: 258 KB - Last synced at: 11 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
sandberg-lab/Spreading-Correction
Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
Language: Jupyter Notebook - Size: 11.4 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 14 - Forks: 3
pdexheimer/scuttle
A command-line utility, a la samtools, that helps to manage and manipulate single-cell data files
Language: Python - Size: 104 KB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
rahulbhadani/scomix
Single-Cell Data Science
Language: Python - Size: 99.6 KB - Last synced at: 10 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
LittleBearX/Sc_RNA_seq
Script for my thesis of single cell rna seq
Language: Python - Size: 92.8 KB - Last synced at: 12 months ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 0