GitHub topics: rna-seq
datirium/workflows
CWL based Bioinformatics Workflows
Language: Common Workflow Language - Size: 3.02 MB - Last synced at: about 1 hour ago - Pushed at: about 1 hour ago - Stars: 16 - Forks: 16
pachterlab/gget
🧬 gget enables efficient querying of genomic reference databases
Language: Python - Size: 329 MB - Last synced at: about 1 hour ago - Pushed at: about 2 hours ago - Stars: 1,014 - Forks: 77
stjude/CICERO
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
Language: Perl - Size: 8.38 MB - Last synced at: about 1 hour ago - Pushed at: about 2 hours ago - Stars: 38 - Forks: 21
milaboratory/mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Language: Kotlin - Size: 47 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 350 - Forks: 80
IlyinVyacheslav/BioInformatics
Gene download from NCBI database, sequence alignment and clusterization, realization of different bioinformatics algorithms within ITMO 4 sem course
Language: Jupyter Notebook - Size: 14.5 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 0
scRNA-tools/scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
Language: R - Size: 128 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 319 - Forks: 77
carushi/reactIDR
Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification
Language: Jupyter Notebook - Size: 2.47 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 4 - Forks: 1
bixBeta/nextflow
nextflow RNAseq pipeline for GG02
Language: Nextflow - Size: 2.89 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 1 - Forks: 1
lcscs12345/riboss
Comparing translation of open reading frames within individual transcripts
Language: Python - Size: 262 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 1
BimberLab/nimble-aligner
nimble-aligner is the backend for nimble, a tool that executes lightweight, flexible alignments to generate supplemental alignment data
Language: Rust - Size: 519 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 1 - Forks: 1
ablab/IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Language: Python - Size: 19.6 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 162 - Forks: 15
agitter/single-cell-pseudotime
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
Size: 699 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 424 - Forks: 62
jarnokoetsier/PAR1KO-iVSMCs
PDGF-BB induced thrombo-inflammation in vascular smooth muscle cells requires functional PAR1 signaling
Language: R - Size: 6.84 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0
FeelLiao/rna-seq-std
RNA-Seq analysis workflow based on snakemake
Language: Python - Size: 7.54 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 1 - Forks: 0
theislab/single-cell-best-practices
https://www.sc-best-practices.org
Language: Jupyter Notebook - Size: 603 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 885 - Forks: 212
snail123815/pybioinfo
Scripts to be used as a bioinformatician, currently in microbiology field.
Language: Python - Size: 4.24 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0
rnabioco/clustifyr
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
Language: R - Size: 60.1 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 121 - Forks: 15
PavlidisLab/rnaseq-pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Language: Shell - Size: 43.5 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 24 - Forks: 5
shaorray/TU_filter
A local TU annotation tool for multi-sample comparison
Language: R - Size: 1.77 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 3 - Forks: 1
nf-core/rnafusion
RNA-seq analysis pipeline for detection of gene-fusions
Language: Nextflow - Size: 19.2 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 153 - Forks: 110
benben-miao/TOmicsVis
Transcriptomics Visualization R package.
Language: R - Size: 198 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 71 - Forks: 15
y9c/cutseq
✂️ Trim sequencing adapters from NGS data automatically
Language: Python - Size: 3.53 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 12 - Forks: 0
tucca-cellag/tucca-rna-seq
[UNDER-CONSTRUCTION] TUCCA's RNA-Seq Snakemake Workflow for Cellular Agriculture Projects
Language: Python - Size: 845 KB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 1 - Forks: 0
zhangyuqing/ComBat-seq
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
Language: R - Size: 597 MB - Last synced at: 3 days ago - Pushed at: over 4 years ago - Stars: 177 - Forks: 38
epigen/genome_tracks
A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
Language: Python - Size: 118 KB - Last synced at: 6 days ago - Pushed at: 4 months ago - Stars: 23 - Forks: 1
owkin/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Language: Python - Size: 1.36 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 641 - Forks: 74
whl-usc/rna2d3d
Scripts and reference files relevant to the computational analysis of data generated by crosslink-ligation based experiments.
Language: Python - Size: 52 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 0
IGS/gEAR
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
Language: Jupyter Notebook - Size: 241 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 15 - Forks: 5
senzhaocode/FuSViz
A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.
Language: JavaScript - Size: 86.8 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 10 - Forks: 4
CDCgov/tostadas
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Language: Python - Size: 49.6 MB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 27 - Forks: 13
compbiolover/CCSinglecell
A project focused on using single-cell RNA sequencing data (scRNA-seq) and pseudo time to improve colon cancer diagnosis and outcomes.
Language: R - Size: 1.02 GB - Last synced at: 3 days ago - Pushed at: 7 days ago - Stars: 6 - Forks: 2
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Language: Python - Size: 78.1 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 25 - Forks: 6
helicalAI/helical
This repository contains the python package for Helical
Language: Python - Size: 21.9 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 107 - Forks: 14
PejLab/Pantry
Pan-transcriptomic phenotyping
Language: Python - Size: 14.3 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 16 - Forks: 0
lpantano/DEGreport
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
Language: R - Size: 51.7 MB - Last synced at: 5 days ago - Pushed at: about 1 year ago - Stars: 25 - Forks: 16
bigomics/omicsplayground
Visual self-service analytics platform for big omics data.
Language: R - Size: 1.2 GB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 125 - Forks: 36
bioinfodlsu/regulated-cell-death-playground
Collection of analysis scripts and notebooks related to regulated cell death
Language: HTML - Size: 85.9 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 0
KrasnitzLab/RAIDS
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
Language: R - Size: 8.52 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 5 - Forks: 4
jkobject/scPRINT 📦
single cell foundation model for Gene network inference and more
Language: Jupyter Notebook - Size: 637 MB - Last synced at: about 15 hours ago - Pushed at: 7 months ago - Stars: 16 - Forks: 9
nf-core/spatialvi
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Language: Nextflow - Size: 7.02 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 61 - Forks: 22
nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language: Nextflow - Size: 71.5 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 1,013 - Forks: 748
GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Language: R - Size: 549 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 206 - Forks: 24
UK-SBCoA-EbbertLab/RNApysoforms
A Python adaptation of ggtranscript with similar functionality, using Plotly and Polars for fast and interactive RNA isoform visualizations.
Language: Jupyter Notebook - Size: 11.7 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 4 - Forks: 0
swsoyee/TCC-GUI
📊 Graphical User Interface for TCC package
Language: R - Size: 37.7 MB - Last synced at: 10 days ago - Pushed at: about 1 year ago - Stars: 46 - Forks: 17
PMBio/Health-Privacy-Challenge
The starter kit for the CAMDA 2025 Health Privacy Challenge.
Language: Python - Size: 43 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 5 - Forks: 5
viktormiok/tigaRcycle
An R package for utilities to guide in-depth detection of circadian signals from omics time series data
Language: Jupyter Notebook - Size: 3.92 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 2 - Forks: 1
markziemann/dee2
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
Language: Shell - Size: 56 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 40 - Forks: 7
jsa-aerial/aerobio
Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.
Language: Clojure - Size: 1.09 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 10 - Forks: 1
actapia/rna_clique
Compute genetic distance matrices using RNA-seq data alone
Language: Python - Size: 849 KB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0
snakemake-workflows/rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Language: Python - Size: 5.83 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 68 - Forks: 45
crazyhottommy/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
Language: Python - Size: 548 KB - Last synced at: 9 days ago - Pushed at: over 3 years ago - Stars: 994 - Forks: 309
BgeeDB/BgeeDB_R
Source code of the R packge BgeeDB to use data from the Bgee database
Language: R - Size: 576 KB - Last synced at: 11 days ago - Pushed at: 3 months ago - Stars: 16 - Forks: 6
dmnfarrell/smallrnaseq
small rna-seq analysis package
Language: Python - Size: 8.32 MB - Last synced at: 7 days ago - Pushed at: over 2 years ago - Stars: 30 - Forks: 19
epigen/spilterlize_integrate
A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices resulting from next-generation sequencing (NGS) experiments (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including confounding factor analysis and diagnostic visualizations.
Language: R - Size: 96.7 KB - Last synced at: 6 days ago - Pushed at: about 2 months ago - Stars: 18 - Forks: 3
epigen/dea_limma
A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.
Language: R - Size: 147 KB - Last synced at: 6 days ago - Pushed at: about 2 months ago - Stars: 26 - Forks: 2
epigen/enrichment_analysis
A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
Language: Python - Size: 1.91 MB - Last synced at: 6 days ago - Pushed at: 3 months ago - Stars: 36 - Forks: 3
igordot/sns
Analysis pipelines for genomic sequencing data
Language: Shell - Size: 522 KB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 67 - Forks: 28
kGorze/RNA-Seq-Nextflow
A reproducible, scalable, and containerized RNA-Seq analysis pipeline implemented in Nextflow. Features modular design with quality control (FastQC/MultiQC), alignment (STAR/HISAT2), quantification (Salmon/featureCounts), and differential expression analysis (DESeq2) components. Includes Docker containerization and CI/CD with GitHub Actions.
Language: HTML - Size: 8.63 MB - Last synced at: 7 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0
daniel-munro/ratgtex-pipeline
Analysis pipeline for RatGTEx
Language: Python - Size: 8.44 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 3 - Forks: 0
epigen/open_pipelines
Pipelines for NGS data preprocessing by the Bock lab and friends
Language: Python - Size: 549 KB - Last synced at: 6 days ago - Pushed at: over 2 years ago - Stars: 21 - Forks: 11
HKU-BAL/Clair3-RNA
Clair3-RNA - a long-read small variant caller for RNA sequencing data
Language: Python - Size: 528 KB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 22 - Forks: 1
nf-core/differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Language: Nextflow - Size: 9.66 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 78 - Forks: 45
deeptools/deepTools
Tools to process and analyze deep sequencing data.
Language: Python - Size: 121 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 714 - Forks: 218
mkayasth/neuroblastomaRNASeq
RNA-seq counts matrix analysis in Neuroblastoma for identifying signature genes in ALT phenotype.
Language: R - Size: 649 KB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 0 - Forks: 0
prokischlab/omicsDiagnostics
This repository contains different scripts to automate and visualize analysis performed for the "Integration of proteomics with genomics and transcriptomics increases the diagnosis rate of Mendelian disorders"
Language: R - Size: 132 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 5 - Forks: 0
saeyslab/nichenetr
NicheNet: predict active ligand-target links between interacting cells
Language: R - Size: 152 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 530 - Forks: 121
isaacvock/fastq2EZbakR
Significant improvement and extension of bam2bakR
Language: Python - Size: 26.6 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 3 - Forks: 0
t-neumann/slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity
Language: Python - Size: 39.4 MB - Last synced at: 14 days ago - Pushed at: 11 months ago - Stars: 46 - Forks: 23
bpucker/Overview
Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.
Size: 153 KB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 1 - Forks: 0
ElementoLab/scTCRseq
Processing of single cell RNAseq data for the recovery of TCRs in python
Language: Python - Size: 23.4 KB - Last synced at: 13 days ago - Pushed at: over 4 years ago - Stars: 28 - Forks: 4
pblumenkamp/Curare
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments
Language: Python - Size: 47.2 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 8 - Forks: 1
maxplanck-ie/snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
Language: Python - Size: 154 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 396 - Forks: 87
sanjaynagi/rna-seq-pop
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
Language: Jupyter Notebook - Size: 99.5 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 18 - Forks: 9
almeidasilvaf/SEA_paper
Code and data associated with the paper 'The Soybean Expression Atlas v2: a comprehensive database of over 5000 RNA-seq samples'
Language: JavaScript - Size: 43 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 1 - Forks: 0
microsoft/scFM-dataselection
Investigating the role of pre-training dataset size and diversity on the performance of single-cell foundation models
Language: Jupyter Notebook - Size: 5.85 MB - Last synced at: 1 day ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 1
microsoft/scFM-datamix
Assessing the influence of training data composition on single-cell foundation model performance
Language: Jupyter Notebook - Size: 6.74 MB - Last synced at: 1 day ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 1
connor122721/nf-eqtls
Nextflow pipeline for disease eQTL mapping and follow up analyses
Language: R - Size: 12 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 0 - Forks: 0
guma44/GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
Language: Jupyter Notebook - Size: 13.3 MB - Last synced at: 6 days ago - Pushed at: 9 months ago - Stars: 152 - Forks: 50
epigen/rnaseq_pipeline
RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
Language: Python - Size: 60.5 KB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 2 - Forks: 0
Novartis/cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
Language: Python - Size: 203 KB - Last synced at: 18 days ago - Pushed at: about 1 year ago - Stars: 61 - Forks: 34
dtm2451/dittoSeq
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
Language: R - Size: 18.7 MB - Last synced at: 13 days ago - Pushed at: 7 months ago - Stars: 198 - Forks: 18
MaayanLab/biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Language: HTML - Size: 67.7 MB - Last synced at: 16 days ago - Pushed at: 5 months ago - Stars: 114 - Forks: 30
havelhakimi/gene-expression
Agglomerative based clustering on gene expression dataset
Language: Jupyter Notebook - Size: 1.26 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 8 - Forks: 0
timbitz/Whippet.jl
Lightweight and Fast; RNA-seq quantification at the event-level
Language: Julia - Size: 21.1 MB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 110 - Forks: 22
CelVoxes/ceLLama
Cell type annotation with local Large Language Models (LLMs) - Ensuring privacy and speed with extensive customized reports
Language: R - Size: 84.9 MB - Last synced at: 10 days ago - Pushed at: 6 months ago - Stars: 147 - Forks: 6
ZJUFanLab/CellTalkDB
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
Language: R - Size: 18.5 MB - Last synced at: 3 days ago - Pushed at: 10 months ago - Stars: 30 - Forks: 5
slowkow/picardmetrics
:vertical_traffic_light: Run Picard on BAM files and collate 90 metrics into one file.
Language: Shell - Size: 9.21 MB - Last synced at: 8 days ago - Pushed at: over 7 years ago - Stars: 41 - Forks: 7
popitsch/rnalib
rnalib: a python-based transcriptomics library
Language: Jupyter Notebook - Size: 328 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 10 - Forks: 1
HorvathLab/NGS
Next-Gen Sequencing tools from the Horvath Lab
Language: Python - Size: 313 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 40 - Forks: 17
RiyaDua/Oral_cancer_gene_identification
This project was my Master's (Biotechnology) Thesis project where we aimed to develop a machine learning model that identifies Oral cancer candidate genes.
Language: R - Size: 32.2 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0
daniel-munro/ratgtex-server-data
Process RatGTEx pipeline results into data files for the RatGTEx site
Language: R - Size: 104 KB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0
amarinderthind/decontaminer
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x
Language: Perl - Size: 1.45 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 9 - Forks: 0
gagneurlab/FRASER
FRASER - Find RAre Splicing Events in RNA-seq
Language: R - Size: 14.5 MB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 44 - Forks: 22
pachterlab/sleuth
Differential analysis of RNA-Seq
Language: R - Size: 33.1 MB - Last synced at: 17 days ago - Pushed at: 10 months ago - Stars: 304 - Forks: 95
gagneurlab/drop
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
Language: Python - Size: 110 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 140 - Forks: 47
complextissue/pytximport
Feature-rich Python implementation of the tximport package for gene count estimation.
Language: Python - Size: 108 MB - Last synced at: 10 days ago - Pushed at: 26 days ago - Stars: 35 - Forks: 2
nf-core/dualrnaseq
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
Language: Nextflow - Size: 44.9 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 21 - Forks: 35
RajLabMSSM/leafcutter-pipeline
Differential splicing and visualisation pipeline for the Raj lab
Language: Python - Size: 2.85 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 2 - Forks: 5
GuyTeichman/RNAlysis
Analyze your RNA sequencing data without writing a single line of code
Language: Python - Size: 795 MB - Last synced at: about 16 hours ago - Pushed at: 3 months ago - Stars: 132 - Forks: 13
jonbra/jonbra.github.io Fork of mmistakes/minimal-mistakes
Testing how to use Jekyll and GitHub Pages to make a webiste.
Language: SCSS - Size: 100 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 1 - Forks: 2
