stemangiola/tidybulk

Brings bulk and pseudobulk transcriptomics to the tidyverse

Language: R - Size: 95.1 MB - Last synced: about 20 hours ago - Pushed: about 20 hours ago - Stars: 159 - Forks: 23

eonurk/cinaR

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

Language: R - Size: 23.9 MB - Last synced: 26 days ago - Pushed: over 1 year ago - Stars: 11 - Forks: 3

SherineAwad/BulkRNASeq

Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

Language: R - Size: 94.7 KB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

amarinderthind/RNA-seq-tutorial-for-gene-differential-expression-analysis

This tutorial is created for educational purpose

Language: R - Size: 2.55 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 24 - Forks: 14

charles-plessy/tutorial

Various tutorials on how to analyse transcriptomic data.

Language: HTML - Size: 1.88 MB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 7 - Forks: 1

renatopuga/rnaseq-callvariants

RNASeq and Call Variants

Language: Shell - Size: 39.1 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

eonurk/RNA-seq-differential-analyses-guideline

A quick recap of widely used differential analyses methods in R for RNA-seq experiments

Size: 320 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 10 - Forks: 3

aprezvykh/bioinformatics

some scripts to process transcriptomics and Chip-seq data

Language: R - Size: 183 MB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 1

PF2-pasteur-fr/SARTools

Statistical Analysis of RNA-Seq Tools

Language: R - Size: 2.17 MB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 100 - Forks: 66

jessmhoehner/Methods Fork of EmoryIntegratedComputationalCore/Methods

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Language: R - Size: 18 MB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

GioFis/Brain-tissue-gene-expression

Brain Tissue Gene Expression

Size: 1.51 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

GioFis/GioFis

Config files for my GitHub profile.

Size: 7.81 KB - Last synced: 10 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

peterlipan/DE_rpy2

Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2

Language: Jupyter Notebook - Size: 115 KB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 10 - Forks: 0

NehaSontakk/RNA-sequencing-fastq-to-differential-gene-expression

RNA sequencing processing and analysis to find differential expression

Language: Jupyter Notebook - Size: 6.06 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 1

markonyango/quasi-express

Language: JavaScript - Size: 3.98 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

stemangiola/ppcseq

Probabilistic outlier identification for bulk RNA sequencing data

Language: R - Size: 153 MB - Last synced: 5 months ago - Pushed: 8 months ago - Stars: 6 - Forks: 3

UBC-iGEM/wheat_RNAseq_analysis

Transcriptome Analysis of Heat and Drought-Stressed Wheat

Language: Jupyter Notebook - Size: 85.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

EmoryIntegratedComputationalCore/Methods

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Language: R - Size: 18 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 5 - Forks: 2

snbogan/Sp_RRBS_ATAC

Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins

Language: R - Size: 387 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1

hernanmd/edgeR.EnhancedVolcanoPlot

Enhanced volcano plot using edgeR data

Language: R - Size: 1.95 KB - Last synced: 15 days ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0

lasamo/epimed_internship

Rstudio files created during my internship at IAB. Internship supervised by Florent Chuffart.

Language: R - Size: 23 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

leekgroup/regionReport

Generate HTML report for a set of genomic regions or DESeq2/edgeR results

Language: R - Size: 66.1 MB - Last synced: 21 days ago - Pushed: about 1 year ago - Stars: 9 - Forks: 4

PF2-pasteur-fr/SARTools-Galaxy

Galaxy wrappers for SARTools (Statistical Analysis of RNA-Seq Tools)

Language: R - Size: 4.1 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 2

pwilmart/Smith_SpC_2018

A large-scale spectral counting data analysis using PAW pipeline, edgeR, R, and Jupyter notebooks

Language: Jupyter Notebook - Size: 20.3 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

pwilmart/Sea_lion_urine_SpC

Sea lion urine comparison with spectral counting.

Language: HTML - Size: 41.1 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0