Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: rrbs
nf-core/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Language: Nextflow - Size: 20 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 133 - Forks: 130
igordot/sns
Analysis pipelines for genomic sequencing data
Language: Shell - Size: 504 KB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 61 - Forks: 27
AnaValente/DNA-methylation-analysis
DNA methylation analysis pipeline for reduced representation bissulfite sequencing data
Language: R - Size: 1.25 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 0
cwarden45/COHCAP
R package for DNA Methylation Analysis (and Gene Expression Integration) for Illumina Infinium Array and BS-Seq Data
Language: R - Size: 210 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0
ben-laufer/DMRichR
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
Language: R - Size: 4.25 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 32 - Forks: 17
sixone11/simulation
The process of simulation and calculate some indexes
Language: Python - Size: 1.72 GB - Last synced: 9 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
nicholas-owen/crb_omics_manuscript
Code for the crb2a multi omics manuscript
Language: R - Size: 310 MB - Last synced: 9 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
snbogan/Sp_RRBS_ATAC
Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins
Language: R - Size: 387 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1
