GitHub topics: methylation-analysis
andrewdavidsmith/transferase
The transferase system for retrieving methylome data from methbase
Language: C++ - Size: 3.51 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 2 - Forks: 0
brj0/mepylome
Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files
Language: Python - Size: 14 MB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 5 - Forks: 0
ErickNavarroD/RAMEN
Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.
Language: R - Size: 12.6 MB - Last synced at: 13 days ago - Pushed at: 18 days ago - Stars: 4 - Forks: 0
Harshith-Reddy-CK/pupil_bio_data_analysis
Welcome to the Pupil Bio Data Analysis repository! This repository contains code and scripts used for the bioinformatics challenge related to identifying somatic mutations and performing quality control for cancer sample analysis.
Language: R - Size: 14.6 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
shitohana/BSXplorer
Comprehensive tool for visualizing genome-wide cytosine data.
Language: Python - Size: 14.2 MB - Last synced at: 11 days ago - Pushed at: 4 months ago - Stars: 8 - Forks: 0
melikeguler99/HIBIT2023
The results of this study were presented as a poster at The International Symposium on Health Informatics and Bioinformatics (HIBIT Bioinformatics)
Language: Python - Size: 64.5 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
mpo05/MeD-seq-analysis
The following repository contains code to analyse MeD-seq data and detect statistically significant genomic bins.
Language: Jupyter Notebook - Size: 368 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
sirselim/illumina450k_filtering
A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
Size: 22.8 MB - Last synced at: 14 days ago - Pushed at: over 1 year ago - Stars: 30 - Forks: 25
irenedonofrio/Infinium-meth-analysis
This repository contains the project of the DNA/RNA Dynamics course of the MSc Bioinformatics at the University of Bologna. The project is about the analysis of methylation data generated from Illumina HumanMethylation450K Beadchip.
Language: R - Size: 817 KB - Last synced at: 5 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0
wassimsalam01/thesis
nf-core/methylseq methylation (Bisulfite-Sequencing) analysis pipeline using custom Bismark settings + Bismark cytosine reports analysis using Daphnia-adapted DMRichR pipeline
Language: Shell - Size: 2.06 MB - Last synced at: 11 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
stjude-biohackathon/MethylMiner
A methylation array analysis pipeline tailored for discovering rare methylation events with interactive data visualization
Language: Python - Size: 46.1 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 2 - Forks: 0
AnaValente/DNA-methylation-analysis
DNA methylation analysis pipeline for reduced representation bissulfite sequencing data
Language: R - Size: 1.25 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0
pipaber/Epigenomics
This is a repository to show my experience analyzing different kinds of epigenomics data.
Language: TeX - Size: 30.4 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
andreaskapou/scMET
Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
Language: R - Size: 3.01 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 18 - Forks: 2
Maximvan/AHTAOmicsAnalysisPCOS
Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University
Size: 24.1 MB - Last synced at: 7 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
kerseviciute/persimmon
Persimmon: DMR Finder
Language: R - Size: 20.5 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0
grev-uv/hpg-msuite
A powerful and friendly tool kit for methylation analysis of DNA
Language: C++ - Size: 634 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
chiaraherzog/IlluminaMouseMethylationmanifest
This package provides Illumina Mouse Methylation Array Manifest (12.v1, Genome Build mm10) compatible with minfi.
Language: R - Size: 10.3 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0
chiaraherzog/IlluminaMouseMethylationanno.12.v1.mm10
This package provides Illumina Mouse Methylation Array Annotation (12.v1, Genome Build mm10) compatible with minfi.
Language: R - Size: 39 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0
espositomario/DNA_methylation_Infinium_HM450
This pipeline is designed for the analysis of DNA methylation data generated from the Illumina HumanMethylation450 BeadChip platform.
Language: R - Size: 5.93 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
GianlucaMattei/methyl.O
Differentially methylated regions analysis
Language: R - Size: 445 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
bdecato/PMD_Paper_Scripts
A repository containing code, data, and resource links for the publication "Characterization of universal features of partially methylated domains across tissues and species"
Language: Shell - Size: 12.5 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
marcDabad/snakemake_nanometh
snakemake pipeline based on nanopolish
Language: Python - Size: 50.8 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
explcre/Adaptable-and-intrepretable-multi-task-learning-based-gene-level-methylation-estimation
adaptable and intrepretable,multi-task learning based gene-level methylation estimations
Language: Python - Size: 125 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0
dohlee/idat2beta
Small minfi wrapper to convert IDAT files to beta values.
Language: R - Size: 0 Bytes - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
GDelevoye/SMSN
Re-implementation of J. Beaulaurier et al's SMSN strategy, using the default PacBio tools
Language: Python - Size: 114 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
zidanwang2025/cell-type-specific-methylation-analysis
This project aims to develop and evaluate difference approaches for cell-type-specific analyses from bulk methylation data
Language: R - Size: 6.84 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
shubhamchandak94/lossy_compression_evaluation
Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy
Language: Jupyter Notebook - Size: 254 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 0
