basclab/LME_MixedEffectsERPDifferenceWave

Scripts used for LME analyses of ERP difference waves from Heise, Mon, and Bowman (2025)

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dev-ved30/Oracle

ORACLE - The first hierarchical deep-learning model for real-time, context-aware classification of the LSST alert stream

Language: Python - Size: 25.1 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 1 - Forks: 0

e271828e/Flight.jl

A high-performance, extensible aircraft GNC framework for Julia

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LCBC-UiO/galamm

An R package for estimating generalized additive mixed models with latent variables

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traitecoevo/hmde

Implementation of hierarchical Bayesian longitudinal models to estimate differential equation parameters.

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nimble-dev/nimble

The base NIMBLE package for R

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elizljohnson-projects/method-lme-cluster-stat

Method for cluster correcting hierarchical models in intracranial EEG timeseries (2025)

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elizljohnson-projects/project-ieeg-aperiodic-development

The development of aperiodic neural activity in the human brain (2025)

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elizljohnson-projects/project-eeg-infant-high-freq

High-frequency broadband activity detected noninvasively in infants distinguishes wake from sleep states (2025)

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djukic14/BlockSparseMatrices.jl

A julia package providing a representation for sparse matrices that are composed of (dense) blocks.

Language: Julia - Size: 7.83 MB - Last synced at: 11 days ago - Pushed at: 26 days ago - Stars: 7 - Forks: 1

Siddhesh2377/HRM

Enhanced Hierarchical Reasoning Model (HRM) An AI system extending HRM with scalable memory, JSON metadata, and tag-based retrieval for layered, context-aware reasoning and persistent knowledge integration.

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ecoverseR/ubms

Fit models to data from unmarked animals using Stan. Uses a similar interface to the R package 'unmarked', while providing the advantages of Bayesian inference and allowing estimation of random effects.

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Sam-Gartenstein/home-run-prediction

Bayesian hierarchical model estimating HR probability per MLB plate appearance, with batter, pitcher & ballpark effects. Built in PyMC/ArviZ for Colab.

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cbg-ethz/scDEF

Deep exponential families for single-cell data.

Language: Python - Size: 35.7 MB - Last synced at: 4 days ago - Pushed at: about 1 month ago - Stars: 20 - Forks: 1

hbmep/hbmep

Hierarchical Bayesian estimation of MEP recruitment curves

Language: Python - Size: 7.39 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 5 - Forks: 1

tasrif-khondaker/HT-CapsNet

Taxonomy-Guided Routing in Capsule Network for Hierarchical Image Classification

Language: Python - Size: 1.21 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

geoSABINA/sabinaNSDM

Spatially-nested hierarchical SDMs

Language: R - Size: 40.2 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 3

bsvars/bpvars

Forecasting with Bayesian Panel Vector Autoregressions

Language: C++ - Size: 25.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 1

embodied-computation-group/Hierarchical-Interoception

Hierarchical Bayesian modeling toolkit for interoceptive psychophysics (HRDT & RRST). Includes Stan models, power analysis tools, and educational resources for researchers.

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hongyehu/RG-Flow

This is project page for the paper "RG-Flow: a hierarchical and explainable flow model based on renormalization group and sparse prior". Paper link: https://arxiv.org/abs/2010.00029

Language: Python - Size: 85.5 MB - Last synced at: 21 days ago - Pushed at: about 3 years ago - Stars: 88 - Forks: 14

translationalneuromodeling/tapas 📦

TAPAS - Translational Algorithms for Psychiatry-Advancing Science

Language: MATLAB - Size: 164 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 242 - Forks: 95

aliciagilmatute/Analisis-Multinivel-Bayesiano

Este estudio explora el análisis multinivel desde un enfoque bayesiano para evaluar la variabilidad del rendimiento en matemáticas entre 10 centros educativos

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Proyectos-II-Ciencia-de-Datos/Analisis-y-Modelamiento-Bayesiano-de-Mortalidad-Infantil-en-Bogota

Análisis y modelamiento bayesiano de la tasa de mortalidad infantil en Bogotá por localidad

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dirmeier/modelframe

Compute fixed and random effects model matrices in Python

Language: Python - Size: 467 KB - Last synced at: about 2 hours ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

Josuercuevas/own_repos

Ideas developed or integrated with other publicly available projects

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CDCgov/ww-inference-model

An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations

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cran-task-views/MixedModels

CRAN Task View: Mixed, Multilevel, and Hierarchical Models in R

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minqi/hnatt

Train and visualize Hierarchical Attention Networks

Language: Python - Size: 232 KB - Last synced at: 3 months ago - Pushed at: over 7 years ago - Stars: 202 - Forks: 34

marcolomele/spatial-heterogeneity

Study of which house features have the most variable effect on the price across Melbourne’s council areas using a Bayesian Hierarchical Mixed Effects Model. For Bocconi University's Probability and Statistics MSc course. Status: completed.

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StatisticsHealthEconomics/multimcm

Bayesian relative mixture cure modelling with Stan.

Language: R - Size: 2.22 GB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

MariePittet/ElasticNet_Boruta_Combo

Predictions of clinical variables with sensible feature selection. Includes: Elastic net, BORUTA, hierarchical regression

Language: R - Size: 29.3 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 1

fabrizioschiavi/FSD-Wordpress-template-hierarchy

Simplified text only version of Wordpress template hierarchy schema

Size: 119 KB - Last synced at: 8 days ago - Pushed at: over 7 years ago - Stars: 6 - Forks: 1

cwangrun/HierProtoPNet

[JBHI 2025] Progressive Mining and Dynamic Distillation of Hierarchical Prototypes for Disease Classification and Localisation

Language: Python - Size: 2.43 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 6 - Forks: 0

brettkromkamp/typed-tree

TypedTree provides a tree data structure that allows adding type information to both nodes and edges; useful for visualisation purposes

Language: Python - Size: 389 KB - Last synced at: about 1 month ago - Pushed at: 11 months ago - Stars: 18 - Forks: 1

JWarmenhoven/DBDA-python

Doing Bayesian Data Analysis, 2nd Edition (Kruschke, 2015): Python/PyMC3 code

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ngzax/animals

A Learning Experiment on modeling inheritance with Eloquent

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measterpojo/Hierarchical-Bayesian-Model-DomainAdaptation

Hierarchical Bayesian models are parameter-based because they define a structured probabilistic framework where parameters are learned at different levels of abstraction.

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jamesuanhoro/ssrhom

R package for Bayesian analysis of single subject data using hierarchical ordinal models

Language: R - Size: 83 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

Luis-Varona/rmp-scraping-with-jags-models

Dynamically scraping `Rate My Professors`, using JAGS to construct hierarchical models of professor ratings. (DATA 4001 final project.)

Language: Python - Size: 1.4 MB - Last synced at: 6 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

abdulrahmans0414/threejs-mastery

Mastering Three.js step by step! This repository documents my learning journey, starting from the basics of 3D web development. Exploring core concepts like scenes, cameras, renderers, geometries, and materials, with hands-on projects and experiments. Gradually progressing to advanced topics like shaders, animations, physics, and WebXR.

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fl0wbar/advDNIC.estimator

Research on Image Compression using Deep Neural Networks

Language: Python - Size: 6.08 MB - Last synced at: 5 months ago - Pushed at: about 3 years ago - Stars: 4 - Forks: 0

AmmarRashed/Hierarchical-Bayesian-Regression

Implementation of Hierarchical, Pooled, and Separate Bayesian Regression models for blood pressure prediction using Pulse Arrival Time (PAT) measurements in Julia

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NJdevPro/Closure-Table

An implementation of the closure table pattern in Python + SQL

Language: Python - Size: 12.7 KB - Last synced at: 5 days ago - Pushed at: almost 3 years ago - Stars: 13 - Forks: 2

romunov/secr_resources

Resources that might come handy to anyone using spatially explicit mark-capture-recapture models.

Size: 522 KB - Last synced at: 7 months ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 1

GiuliaCuttone/Goat-Vocalizations

Audio Pattern Recognition Project

Language: Python - Size: 604 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

STooDs-tools/RSTooDs

An R user interface to STooDs

Language: R - Size: 3.87 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 1

albey-code/my_dynamic_predictive_coding

This repository holds my adaptation of the dynamic predictive coding (DPC) model by Jiang & Rao (2024). The DPC model is a generative hierarchical model which processes not only spatial but also temporal (dynamic) input image data.

Language: Jupyter Notebook - Size: 385 KB - Last synced at: 3 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

Sshanu/Hierarchical-Word-Sense-Disambiguation-using-WordNet-Senses

Word Sense Disambiguation using Word Specific models, All word models and Hierarchical models in Tensorflow

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phanikmr/Graph-Matching-for-Image-Retrival

Content based image search using contours of image

Language: Python - Size: 18.9 MB - Last synced at: 7 months ago - Pushed at: almost 8 years ago - Stars: 10 - Forks: 0

IamGianluca/arm

My solutions to the exercises in "Data Analysis Using Regression and Multilevel/Hierarchical Models" by Andrew Gelman and Jennifer Hill

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JanaJarecki/Risk-preferences-and-risk-perception-affect-the-acceptance-of-digital-contact-tracing

In 2020, we investigated the acceptance of digital health applications against Covid-19 in a pre-registered, open-coded, open-data, open-source project

Language: R - Size: 320 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

nlpAThits/figet-hyperbolic-space

Code for the paper "Fine-Grained Entity Typing in Hyperbolic Space"

Language: Python - Size: 2.78 MB - Last synced at: 8 months ago - Pushed at: almost 6 years ago - Stars: 37 - Forks: 1

SerezD/NVAE-from-scratch

Unofficial Pytorch Implementation of the Nouveau Variational AutoEncoder (NVAE) paper.

Language: Python - Size: 610 KB - Last synced at: 7 months ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

jssweller/DrugHIVE

DrugHIVE: Structure-based drug design with a deep hierarchical generative model

Language: Python - Size: 372 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 58 - Forks: 7

Paulj1989/money-in-football

Bayesian multilevel model measuring the effect of football (soccer) club resources on total league points across seven European leagues and ten seasons.

Language: R - Size: 18.8 MB - Last synced at: 3 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

wangruinju/Double-Fusion

A bayesian approach to examining default mode network functional connectivity and cognitive performance in major depressive disorder

Language: Python - Size: 4.74 MB - Last synced at: 12 months ago - Pushed at: about 6 years ago - Stars: 12 - Forks: 2

ProvenceStar/PartGLEE

[ECCV2024] PartGLEE: A Foundation Model for Recognizing and Parsing Any Objects

Language: Python - Size: 37.5 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 15 - Forks: 0

beekill95/numpyro-doing-bayesian

My implementation of John K. Kruschke's Doing Bayesian Data Analysis 2nd edition using Python and Numpyro.

Language: Python - Size: 190 MB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 1

tasrif-khondaker/H-CapsNet

H-CapsNet: A Capsule Network for Hierarchical Image Classification

Language: Jupyter Notebook - Size: 623 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1

tw-presents/be23-lecture7

Bayesian Econometrics 2023 at unimelb: slides for lecture 7: Bayesian VARs

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kirangauthier/enzymeBayesKucukelbir

Repository for Machine Learning with Probabilistic Programming by Alp Kucukelbir

Language: Jupyter Notebook - Size: 24.9 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0

herolab-uga/hgprl

Hierarchical Gaussian Processes based Multi-Robot Relative Localization

Language: Python - Size: 2.57 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

hbmep/hbmep-paper

Language: Python - Size: 293 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

mlchrzan/HLM-school-closure

This study investigates the relationship between district diversity and school closure rates, focusing on whether more diverse districts close more schools. Utilizing hierarchical linear models (HLMs), the research examines both district-level and time-level factors influencing school closures.

Language: R - Size: 82 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

donotdespair/Bayesian-Unobserved-Component-Models

We are presenting a Bayesian local-level model and its extensions

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ztanml/arLMM

Approximate Ridge Linear Mixed Models (arLMM)

Language: C - Size: 1.38 MB - Last synced at: 5 months ago - Pushed at: about 6 years ago - Stars: 5 - Forks: 1

souravmalik123/Project-on-Crime-Data-by-Hierachical-Clustering

Language: Jupyter Notebook - Size: 240 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

dflemin3/gloria

A hierarchical Bayesian model for the remainder of the suspended 2019-2020 NHL season

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chinghao0703/Bayesian-Inference-covid-antibody-test

Language: HTML - Size: 708 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

Korag/AnalizaProcesowUczenia

Language: R - Size: 481 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

petrushev/bayesian-modeling

Case studies with Bayesian methods

Language: Jupyter Notebook - Size: 16.6 MB - Last synced at: 25 days ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 2

TheChanRProject/CGUMRAssignments

Repo for multiple regression assignments in Quant III for EDUC467.

Size: 574 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0

bsantraigi/Hierarchical-Transformer-Dialog

Development repository for implementations of Models/Experiments in "Hierarchical Transformer for Task Oriented Dialog Systems" - NAACL 2021 (Long Paper)

Language: Jupyter Notebook - Size: 74.8 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

giannisnik/mpad

Message Passing Attention Networks for Document Understanding

Language: Python - Size: 1.04 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 60 - Forks: 17

cviss-lab/MODR

Multi-output CNN model for Disaster Reconnaissance

Language: Python - Size: 36.1 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

linhaowei1/HMC

The code of Hierarchical Multi-label Classification (HMC). It is a final course project of Natural Language Processing and Deep Learning, 2022 Fall.

Language: Python - Size: 16.7 MB - Last synced at: 7 months ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0

pnnl/TransMED

Transfer Learning From Existing Diseases Via Hierarchical Multi-Modal BERT Models

Language: Python - Size: 77.1 KB - Last synced at: 7 months ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 3

kaiquefreire05/hierarchical-grouping

- Making grouping using hierarchical group.

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StatisticsHealthEconomics/speed-limits

The project aims at using quasi-experimental designs to estimate the impact of policy reducing speed limits in major cities, on the number of road accidents. It is based on Bayesian hierarchical modelling and Poisson regression

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andreaskapou/scMET

Bayesian modelling of DNA methylation heterogeneity at single-cell resolution

Language: R - Size: 3.01 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 18 - Forks: 2

bsantraigi/HIER

Official Repo for Implementations of Models/Experiments in "Hierarchical Transformer for Task Oriented Dialog Systems" - NAACL 2021 (Long Paper)

Language: Jupyter Notebook - Size: 57.3 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 0

thomasjdelaney/Multiscale

Project for fitting a multiscale model as described in Kolaczyk et al 2000.

Language: Python - Size: 3.87 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0

rajivsarvepalli/SimpleHierarchy

A python package adding basic hierarchal networks in pytorch for classification tasks. It implements a simple hierarchal network structure based on feed-backward outputs.

Language: Python - Size: 1.49 MB - Last synced at: 7 days ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 0

aaron1rcl/multivariate_time_series_interpolation

Multivariate Time series interpolation using hierarchical mixed effects models.

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kenkellner/Unmarked.jl

Unofficial port of the R package unmarked

Language: Julia - Size: 258 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

kevin-murgas/DNAmethylation-hierarchicalmodel

Data processing, model fitting, and analysis code for the hierarchical DNA methylation model developed by Murgas et al. (2021)

Language: R - Size: 96.2 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 1

StatisticsHealthEconomics/covid

The project can be split into different sub-projects (easy-medium difficulty: meta-analysis of COVID vaccines; medium-high difficulty: estimating excess mortality due to COVID). Requires skills in R and will require some learning on Bayesian modelling.

Size: 28.3 KB - Last synced at: 11 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

nihitparikh/Predictive-Analysis-for-Stated-Consumer-Preference-Data-for-Monitor-Industry

This repository includes my marketing/data analytics project on monitor dataset that includes Maximum Likelihood Model, Market Simulation, Cluster Analysis, Market Basket Analysis, Association Rule Mining, Hierarchical Bayesian Regression Model, R script code.

Language: R - Size: 9.29 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

cescalara/uhecr_model

Impact of using the UHECR arrival energies to constrain source associations

Language: Jupyter Notebook - Size: 68.6 MB - Last synced at: about 2 months ago - Pushed at: about 3 years ago - Stars: 5 - Forks: 5

maps-apps-n/multilevel_regression

Multilevel Regression models in R

Language: R - Size: 131 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 1 - Forks: 0

akash18tripathi/MAGNET-Multi-Label-Text-Classi-cation-using-Attention-based-Graph-Neural-Network

This GitHub repository provides an implementation of the paper "MAGNET: Multi-Label Text Classification using Attention-based Graph Neural Network" . MAGNET is a state-of-the-art approach for multi-label text classification, leveraging the power of graph neural networks (GNNs) and attention mechanisms.

Language: Jupyter Notebook - Size: 3.98 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 6 - Forks: 0

jundsp/gibbs

Gibbs samplers for inferring latent variables and learning the parameters of Bayesian hierarchical models.

Language: Python - Size: 6.94 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

kenkellner/pyunmarked

A Python port of the R package unmarked, for analyzing ecological data while accounting for imperfect detection.

Language: Python - Size: 10.7 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 1

Snigdho8869/Clustering-Projects

Repository for various clustering projects including mall customer segmentation and more. Explore data analysis and clustering techniques

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OpenThermochronology/EmpiricalBayes

Uses of a form of Empirical Bayes resampling (also known as Hierarchical Bayes) for more robust (U-Th)/He data uncertainty estimation for use in time-temperature history inversions.

Language: Jupyter Notebook - Size: 73.2 KB - Last synced at: 10 days ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

lingxuez/URSM

A Unified RNA Sequencing Model (URSM) for joint analysis of single cell and bulk RNA-seq data.

Language: Python - Size: 1.13 MB - Last synced at: about 2 years ago - Pushed at: about 8 years ago - Stars: 10 - Forks: 4

arunarn2/HierarchicalAttentionNetworks

Hierarchical Attention Networks for Document Classification in Keras

Language: Python - Size: 1.23 MB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 70 - Forks: 28

sandipanpaul21/Clustering-in-Python

Clustering methods in Machine Learning includes both theory and python code of each algorithm. Algorithms include K Mean, K Mode, Hierarchical, DB Scan and Gaussian Mixture Model GMM. Interview questions on clustering are also added in the end.

Language: Jupyter Notebook - Size: 16.2 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 81 - Forks: 35

jonsedar/pymc3_vs_pystan

Personal project to compare hierarchical linear regression in PyMC3 and PyStan, as presented at http://pydata.org/london2016/schedule/presentation/30/ video: https://www.youtube.com/watch?v=Jb9eklfbDyg

Language: Jupyter Notebook - Size: 21.4 MB - Last synced at: almost 2 years ago - Pushed at: over 9 years ago - Stars: 126 - Forks: 43

hanjq17/EGHN

[NeurIPS 2022] The implementation for the paper "Equivariant Graph Hierarchy-Based Neural Networks".

Language: Python - Size: 8.31 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 15 - Forks: 2