eggplantbren/DNest5

Diffusive Nested Sampling like you've never seen it before

Language: C++ - Size: 219 KB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 8 - Forks: 1

YannisZa/GeNSIT

Generating Neural Spatial Interaction Tables

Language: Python - Size: 10.3 MB - Last synced: 3 days ago - Pushed: 7 days ago - Stars: 0 - Forks: 0

kingaa/pomp

R package for statistical inference using partially observed Markov processes

Language: R - Size: 1020 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 106 - Forks: 26

Igodlab/ml-book

Notes of 'Probabilistic Machine Learning: Advanced Topics' by Kevin Murphy

Language: Jupyter Notebook - Size: 2.04 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 2 - Forks: 0

PauloCarvalhoRJ/gammaray

GammaRay: a graphical interface to GSLib and other geomodeling algorithms. *NEW* in May, 6th: Drift analysis.

Language: C++ - Size: 244 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 37 - Forks: 15

madsjulia/AffineInvariantMCMC.jl

Affine Invariant Markov Chain Monte Carlo (MCMC) Ensemble sampler

Language: Julia - Size: 740 KB - Last synced: 6 days ago - Pushed: 9 days ago - Stars: 31 - Forks: 11

quantinsights/calculus_based_probability

Topics in Probability Theory and Stochastic Processes

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NBISweden/MrBayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

Language: C - Size: 45.3 MB - Last synced: 7 days ago - Pushed: 3 months ago - Stars: 220 - Forks: 77

cevenkadir/NeuralQuantumStates.jl

Neural quantum states in Julia

Language: Julia - Size: 129 KB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 1 - Forks: 0

chinghao0703/Bayesian-Inference-covid-antibody-test

Language: HTML - Size: 708 KB - Last synced: 18 days ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

ggalloni/LiLit

Likelihood for LiteBIRD

Language: Python - Size: 1.67 MB - Last synced: 19 days ago - Pushed: about 2 months ago - Stars: 4 - Forks: 0

netket/netket

Machine learning algorithms for many-body quantum systems

Language: Python - Size: 62.6 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 498 - Forks: 170

VinylBr/EE769_MLMethods_from_scratch

Linear Regression and Classification from scratch

Language: Jupyter Notebook - Size: 2.83 MB - Last synced: 19 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 0

fehiepsi/rethinking-numpyro

Statistical Rethinking (2nd ed.) with NumPyro

Language: Jupyter Notebook - Size: 160 MB - Last synced: 14 days ago - Pushed: 3 months ago - Stars: 427 - Forks: 71

GPflow/GPflow

Gaussian processes in TensorFlow

Language: Python - Size: 356 MB - Last synced: 24 days ago - Pushed: 30 days ago - Stars: 1,794 - Forks: 436

alxsrobert/o2geosocial

Reconstruction of Transmission Chains from Surveillance Data

Language: R - Size: 267 MB - Last synced: 2 days ago - Pushed: about 2 months ago - Stars: 8 - Forks: 2

carlosgorlongaiatto/LabLOCP_B_Project

Time-scale correction for d18O data using Bayesian inference.

Language: Jupyter Notebook - Size: 17.7 MB - Last synced: 25 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 3

prmiles/pymcmcstat

Python implementation of MATLAB toolbox "mcmcstat"

Language: Jupyter Notebook - Size: 9.06 MB - Last synced: 5 days ago - Pushed: over 1 year ago - Stars: 67 - Forks: 10

tomorrowdata/COVID-19

covid-19 Rt real time computation

Language: Jupyter Notebook - Size: 1.46 GB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 5 - Forks: 0

larsgeb/hmclab

Language: Jupyter Notebook - Size: 70.1 MB - Last synced: 17 days ago - Pushed: 8 months ago - Stars: 20 - Forks: 0

matt-graham/mici

Manifold Markov chain Monte Carlo methods in Python

Language: Python - Size: 22.5 MB - Last synced: 29 days ago - Pushed: 9 months ago - Stars: 209 - Forks: 28

ermongroup/a-nice-mc

Code for "A-NICE-MC: Adversarial Training for MCMC"

Language: Jupyter Notebook - Size: 6.42 MB - Last synced: 22 days ago - Pushed: almost 6 years ago - Stars: 124 - Forks: 28

stan-dev/cmdstanr

CmdStanR: the R interface to CmdStan

Language: R - Size: 25.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 132 - Forks: 59

choderalab/openmmtools

A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

Language: Python - Size: 32.8 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 233 - Forks: 75

fmagrini/bayes-bay

Generalised Bayesian inversion framework

Language: Python - Size: 44.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 1

helske/bssm

Bayesian Inference of State Space Models

Language: HTML - Size: 63.3 MB - Last synced: 13 days ago - Pushed: 7 months ago - Stars: 41 - Forks: 14

eggplantbren/DNest4

Diffusive Nested Sampling

Language: C++ - Size: 7.04 MB - Last synced: 29 days ago - Pushed: about 1 year ago - Stars: 59 - Forks: 21

uncomplicate/bayadera

High-performance Bayesian Data Analysis on the GPU in Clojure

Language: Clojure - Size: 1020 KB - Last synced: 13 days ago - Pushed: over 3 years ago - Stars: 360 - Forks: 24

erathorn/MCPhylo.jl

(Hierarchical) Phylogenetic Models in Julia

Language: Julia - Size: 13.2 MB - Last synced: 8 days ago - Pushed: 2 months ago - Stars: 7 - Forks: 2

wlandau/instantiate

Pre-compiled CmdStan models in R packages

Language: R - Size: 464 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 21 - Forks: 1

gil2rok/drghmc-old

Delayed Rejection Generalized HMC sampler

Language: C++ - Size: 41.5 MB - Last synced: about 2 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

wiseodd/MCMC

Collection of Monte Carlo (MC) and Markov Chain Monte Carlo (MCMC) algorithms applied on simple examples.

Language: Python - Size: 7.81 KB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 339 - Forks: 129

matt77hias/StochasticExperiments 📦

📈 Course Deterministic and Stochastic Integration Techniques: Stochastic experiments

Language: Python - Size: 924 KB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

selotape/G-PhoCS Fork of gphocs-dev/G-PhoCS

G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.

Language: C++ - Size: 3 MB - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

horheynm/MonteCarloMarkovChain_BidirectionalCargoTransport_

repo for the paper https://onlinelibrary.wiley.com/doi/full/10.1111/tra.12639

Language: MATLAB - Size: 2.54 MB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

kthohr/mcmc

A C++ library of Markov Chain Monte Carlo (MCMC) methods

Language: C++ - Size: 217 KB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 148 - Forks: 47

phuijse/MonteCarloBook

Repositorio de la unidad 2 del curso INFO274: Simulación, Instituto de Informática, UACh

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eigenfoo/littlemcmc

A lightweight and performant implementation of HMC and NUTS in Python, spun out of the PyMC project.

Language: Python - Size: 772 KB - Last synced: 8 days ago - Pushed: about 3 years ago - Stars: 49 - Forks: 8

ant-louis/cryptanalysis-mcmc

Decrypting a message encoded by substitution cipher using Markov chain Monte Carlo.

Language: MATLAB - Size: 2.53 MB - Last synced: 3 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 1

mschauer/ZigZagBoomerang.jl

Sleek implementations of the ZigZag, Boomerang and other assorted piecewise deterministic Markov processes for Markov Chain Monte Carlo including Sticky PDMPs for variable selection

Language: Julia - Size: 37.4 MB - Last synced: 6 days ago - Pushed: over 1 year ago - Stars: 95 - Forks: 7

FranxYao/Deep-Generative-Models-for-Natural-Language-Processing

DGMs for NLP. A roadmap.

Size: 32 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 388 - Forks: 33

Joao-Tiago-Almeida/Modelling-and-Simulation-of-Control-Systems

Modelling and Simulation course's Practical Exercises

Language: MATLAB - Size: 43.1 MB - Last synced: 3 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

MathBilibili/Stochastic-approximation-cut-algorithm

Stochastic Approximation Cut Algorithm for Inference in Modularised Bayesian Models

Language: R - Size: 103 MB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0

alan-turing-institute/PDSampler.jl 📦

Piecewise Deterministic Sampler library (Bouncy particle sampler, Zig Zag sampler, ...)

Language: Julia - Size: 12.1 MB - Last synced: 20 days ago - Pushed: over 3 years ago - Stars: 33 - Forks: 8

MikeS96/bayes_statististics

Bayesian Statistics MOOC by Coursera - Solutions in Python

Language: Jupyter Notebook - Size: 34.4 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 29 - Forks: 5

avehtari/rhat_ess

Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of MCMC

Language: HTML - Size: 70.4 MB - Last synced: 13 days ago - Pushed: over 2 years ago - Stars: 27 - Forks: 5

eebeohar/MCMC_2dIsing

An application of Markov Chain Monte Carlo to 2-d Ising system.

Language: C - Size: 312 KB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

ksachdeva/rethinking-tensorflow-probability

Statistical Rethinking (2nd Ed) with Tensorflow Probability

Language: Jupyter Notebook - Size: 321 MB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 268 - Forks: 47

aymeric-roucher/predicting_bordeaux_wine_prices

Language: Jupyter Notebook - Size: 352 KB - Last synced: 4 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 1

mkln/radgp

Radial neighbors GP

Language: R - Size: 1 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

rmorsomme/PDSIR-article

Companion Repository to the Exact Bayesian Inference for Partially Observed Stochastic Epidemic Models via Uniformly Ergodic Block Sampling by R. Morsomme and J. Xu

Language: PostScript - Size: 18.6 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

Danielwohlr/bayesian-height-data-analysis

Bayesian analysis of children's height data from Galton's experiment

Language: R - Size: 9.37 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

dimasjackson/Supernovae-Analysis-with-MCMC

Data analysis of 1701 supernovae distances to estimate cosmological parameters using Markov Chain Monte Carlo

Language: Jupyter Notebook - Size: 3.59 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 4 - Forks: 1

UBC-Stat-ML/blangSDK

Blang's software development kit

Language: Xtend - Size: 3.09 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 23 - Forks: 6

lucadellalib/bayestorch

Lightweight Bayesian deep learning library for fast prototyping based on PyTorch

Language: Python - Size: 104 KB - Last synced: 11 days ago - Pushed: about 1 year ago - Stars: 8 - Forks: 0

aprabaswara/Bayesian-inference-on-Covid-19-incidence-in-England

Markov Chain Monte Carlo Simulation for COVID-19 Incidence.

Language: R - Size: 28.3 KB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

ArsamAryandoust/CarParkingMaps 📦

City-scale car traffic and parking density maps from Uber Movement travel time data

Language: Julia - Size: 72.1 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

SeyedMuhammadHosseinMousavi/Synthetic-Data-Generation-by-Markov-Chain-Monte-Carlo

Synthetic Data Generation by Markov Chain Monte Carlo (MCMC)

Language: MATLAB - Size: 5.86 KB - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 2 - Forks: 0

GabrielJauma/exploring-QA-spin-glass

This repository contains the Python code associated with the scientific publication "Exploring Quantum Annealing Architectures: A Spin Glass Perspective".

Language: Jupyter Notebook - Size: 66.1 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

ASaid7/Hierarchical-Bayes-and-Gibbs-Sampling

Gibbs Sampler example with Hierarchical Bayes for inference

Language: Jupyter Notebook - Size: 43 KB - Last synced: 6 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

pakheili/bayesian-structured-time-series-mcmc-parallel-tempering

Bayesian Structured Time Series Analysis with Parallel Tempering for Stock Market Prediction

Language: Python - Size: 4.46 MB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

ayigitdogan/Steady-State-Distribution-of-an-Ergodic-Markov-Chain

Calculation of the steady state probability of an ergodic Markov Chain with R

Size: 280 KB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

analyticswithali/Optimization-programming

Constrained optimization problems, including linear,network, dynamic,integer, and nonlinear programming, decision trees, queueing theory and Markov decision processes.

Language: HTML - Size: 3.23 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 4 - Forks: 0

GMPtk/RVis

Open access PBPK modelling platform

Language: C# - Size: 2.89 MB - Last synced: 7 months ago - Pushed: 10 months ago - Stars: 4 - Forks: 0

newportquant/MCMC-for-stochastic-volatility

Stochastic Volatility Estimated by MCMC (Markov Chain Monte Carlo) Method

Language: MATLAB - Size: 146 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 3 - Forks: 1

choo8/mcmc-algorithms

Implementation of MCMC Algorithms Metropolis-Hastings and Gibbs Sampling

Language: Jupyter Notebook - Size: 161 KB - Last synced: 2 months ago - Pushed: over 6 years ago - Stars: 7 - Forks: 1

MasatakaYm/Molecular-Simulation

分子シミュレーションの理論や関連するトピックをまとめたノート

Language: TeX - Size: 51.9 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 15 - Forks: 5

lbelzile/MATH80601A

Course notes for "Bayesian modelling" (MATH80601A)

Language: TeX - Size: 55.5 MB - Last synced: 28 days ago - Pushed: 29 days ago - Stars: 1 - Forks: 1

arm61/uravu

A straightforward Bayesian data fitting library

Language: Python - Size: 1.67 MB - Last synced: 21 days ago - Pushed: 7 months ago - Stars: 23 - Forks: 5

HenrikHag/Exploring-modern-simulation-algorithms-for-complex-Langevin

Implementations of quantum simulation algorithms MCMC and Langevin

Language: Julia - Size: 58.1 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

jmatta1/MCMCpp

A C++ header only library that performs Markov chain Monte Carlo sampling in several forms.

Language: C++ - Size: 376 KB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

Sushi0998/Max-Cut

Simulation of markov chain.

Language: R - Size: 87.9 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

draktr/monte-library

Monte is a set of Monte Carlo methods in Python. The package is written to be flexible, clear to understand and encompass variety of Monte Carlo methods.

Language: Python - Size: 93.8 KB - Last synced: about 2 months ago - Pushed: 12 months ago - Stars: 3 - Forks: 0

marquescruz/covid19-contact-tracing-cases-simulation

Simulation of COVID-19 cases arising from high-risk contacts

Language: R - Size: 43 KB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

Max-Winga/States-of-Matter-MCMC

Simulating changes of state of matter using metropolis MCMC for a class at UIUC

Language: Jupyter Notebook - Size: 40.3 MB - Last synced: 9 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

hippylib/hippylib2muq

Scalable Markov chain Monte Carlo Sampling Methods for Large-scale Bayesian Inverse Problems Governed by PDEs

Language: Jupyter Notebook - Size: 8.34 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 3

mohanagr/PyMC

Monte Carlo Markov Chain sampler for a given function

Language: Python - Size: 19.5 KB - Last synced: 9 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

PeterDenton/ANA

Astrophysical Neutrino Anisotropy

Language: C++ - Size: 56.6 KB - Last synced: 9 months ago - Pushed: about 7 years ago - Stars: 1 - Forks: 0

joeylitalien/mlt

Metropolis Light Transport (Reading Group)

Language: Python - Size: 24.1 MB - Last synced: 9 months ago - Pushed: about 6 years ago - Stars: 2 - Forks: 0

murrowma/pybeam

PyBEAM: A Bayesian approach to parameter inference for a wide class of binary evidence accumulation models

Language: Jupyter Notebook - Size: 38.1 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 5 - Forks: 2

WenjieZ/easyMH

A lightweight Markov Chain Monte Carlo package with focus on Metropolis-Hastings.

Language: Python - Size: 813 KB - Last synced: about 2 months ago - Pushed: almost 4 years ago - Stars: 3 - Forks: 0

Nicolas-Francisco/Statistical_Thinking

My personal repository for Statistical Thinking course assignments, 8th semester, Computer Science Engineering.

Size: 37.7 MB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

UBC-Stat-ML/blangDoc

Dev documentation for Blang

Size: 82 KB - Last synced: 9 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 1

UBC-Stat-ML/blangDSL

Blang core (parsing, generation, eclipse plug-in)

Language: Xtend - Size: 3.78 MB - Last synced: 9 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

xlabmedical/mcmcse

Provides tools for computing Monte Carlo standard errors (MCSE) in Markov chain Monte Carlo (MCMC). A python numpy implementation of mcmcse.r

Language: Python - Size: 11.7 KB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 6 - Forks: 0

SamuelWiqvist/adamcmcpaper

Algorithms and case studies for the paper "Accelerating delayed-acceptance Markov chain Monte Carlo algorithms".

Language: Julia - Size: 146 MB - Last synced: 9 months ago - Pushed: almost 5 years ago - Stars: 4 - Forks: 0

voduchuy/StMcmcCme

This repository contains the Python modules and scripts to reproduce the results in the paper "Catanach, Vo, Munsky. IJUQ 2020."

Language: Jupyter Notebook - Size: 124 MB - Last synced: 9 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

cgokmen/particles

Particles, a self-organizing particle system algorithm simulator, developed for research projects at GT's Theory Lab.

Language: Java - Size: 142 KB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

astronomy/SPINspiral

SPINspiral is a parameter-estimation code for the analysis of gravitational-wave signals detected by LIGO/Virgo.

Language: C - Size: 665 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 4

hishamp3/DataScience

Language: Jupyter Notebook - Size: 172 KB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

nianqiaoju/agents

This repository contains code for the paper `Sequential Monte Carlo algorithms for agent-based models of disease transmission' by Nianqiao (Phyllis) Ju, Jeremy Heng and Pierre Jacob.

Language: R - Size: 41 MB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0

jhell96/music-perception-mcmc

Using MCMC to estimate notes in audio, and comparing to human estimation of chords

Language: Python - Size: 6.27 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0

florent-leclercq/Bayes_InfoTheory

Lectures on Bayesian statistics and information theory

Language: Jupyter Notebook - Size: 29.3 MB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 28 - Forks: 3

abmantz/rgw

A lightweight R-language implementation of the affine-invariant sampling method of Goodman & Weare (2010)

Language: R - Size: 16.6 KB - Last synced: 6 months ago - Pushed: 10 months ago - Stars: 2 - Forks: 0

lenaromanenko/markov_simulation

Simulation of customer behaviour in a supermarket based on Markov Chain.

Language: Jupyter Notebook - Size: 4.18 MB - Last synced: 10 months ago - Pushed: about 3 years ago - Stars: 2 - Forks: 1

mahfuz05062/jeder Fork of benslice/jeder

Estimate experimental error rates from replicates using MCMC.

Language: Python - Size: 51.8 KB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

JimRaza/ML-Projects

Machine learning and data science projects in Python

Language: Jupyter Notebook - Size: 8.92 MB - Last synced: 10 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

USCbiostats/fmcmc

A friendly MCMC framework

Language: R - Size: 14.2 MB - Last synced: 16 days ago - Pushed: 8 months ago - Stars: 13 - Forks: 7

zang-langyan/Markov-Chain-Monte-Carlo-MCMC

Markov Chain Monte Carlo MCMC methods are implemented in various languages (including R, Python, Julia, Matlab)

Language: Python - Size: 27.3 KB - Last synced: 10 months ago - Pushed: 11 months ago - Stars: 16 - Forks: 2

alessimichele/HMM-for-text-decryption

This repository contains a Python implementation of HMM and MCMC methods for text decryption. These methods are applied for decrypting messages which have been encoded using a various ciphers.

Language: Jupyter Notebook - Size: 83.3 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 3 - Forks: 0