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GitHub topics: markov-chain-monte-carlo

delemmaao/BSc_Astrophysics_Projects

These are all the astrophysics projects in my final year. My final-year project focuses on orbital transfer optimisation using gradient descent and the Markov Chain Monte Carlo method for uncertainty evaluation.

Language: Jupyter Notebook - Size: 14.1 MB - Last synced at: about 13 hours ago - Pushed at: about 14 hours ago - Stars: 1 - Forks: 0

rchristie95/SSEPathSampling

This repository contains code for the research paper "Transition Path and Interface Sampling of Stochastic Schrödinger Dynamics (2024)".

Language: MATLAB - Size: 82 KB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 1 - Forks: 0

wiseodd/MCMC

Collection of Monte Carlo (MC) and Markov Chain Monte Carlo (MCMC) algorithms applied on simple examples.

Language: Python - Size: 7.81 KB - Last synced at: 4 days ago - Pushed at: over 7 years ago - Stars: 383 - Forks: 127

mach3-software/MaCh3

The official repository for MaCh3

Language: C++ - Size: 692 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 7 - Forks: 7

tomorrowdata/COVID-19

covid-19 Rt real time computation

Language: Jupyter Notebook - Size: 1.46 GB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 5 - Forks: 0

maatouk/sampling_large_hyperplane_tMVN

This repository contains R codes for sampling high-dimensional hyperplane truncated multivariate normal distribution using Karhunen-Loève expansion (KLE) and Matheron update rule (MUR)

Language: R - Size: 167 KB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0

BjarkeHautop/bayesSSM

Bayesian Methods for State Space Models

Language: R - Size: 8.53 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 2 - Forks: 0

netket/netket

Machine learning algorithms for many-body quantum systems

Language: Python - Size: 64.8 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 608 - Forks: 200

lcgroff2/matlab

Legacy MATLAB code from PhD dissertation work and academic postdoc work

Language: MATLAB - Size: 499 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

eggplantbren/DNest4

Diffusive Nested Sampling

Language: C++ - Size: 7.09 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 69 - Forks: 23

mach3-software/MaCh3Tutorial

Tutorial how to use MaCh3

Language: C++ - Size: 33.1 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 8 - Forks: 1

TheDisorderedOrganization/Arianna.jl

A system-agnostic approach to Monte Carlo simulations

Language: Julia - Size: 1.03 MB - Last synced at: 3 days ago - Pushed at: 15 days ago - Stars: 30 - Forks: 0

stan-dev/cmdstanr

CmdStanR: the R interface to CmdStan

Language: R - Size: 27.7 MB - Last synced at: 1 day ago - Pushed at: 16 days ago - Stars: 150 - Forks: 65

wlandau/instantiate

Pre-compiled CmdStan models in R packages

Language: R - Size: 838 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 24 - Forks: 2

TheDisorderedOrganization/ParticlesMC

Package to run atomic / molecular Monte Carlo simulations

Language: Julia - Size: 63.1 MB - Last synced at: 1 day ago - Pushed at: 17 days ago - Stars: 18 - Forks: 0

NBISweden/MrBayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

Language: C - Size: 43.5 MB - Last synced at: 3 days ago - Pushed at: 2 months ago - Stars: 245 - Forks: 83

matt-graham/mici

Manifold Markov chain Monte Carlo methods in Python

Language: Python - Size: 35.6 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 229 - Forks: 27

kthohr/mcmc

A C++ library of Markov Chain Monte Carlo (MCMC) methods

Language: C++ - Size: 217 KB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 180 - Forks: 47

Tszon/BSc_Astrophysics_Projects

These are all the astrophysics projects in my final year. My final-year project focuses on orbital transfer optimisation using gradient descent and the Markov Chain Monte Carlo method for uncertainty evaluation.

Language: Jupyter Notebook - Size: 14.1 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 0

choderalab/openmmtools

A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

Language: Python - Size: 33 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 278 - Forks: 86

fmagrini/bayes-bay

Generalised Bayesian inversion framework

Language: Python - Size: 45.5 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 44 - Forks: 8

kingaa/pomp

R package for statistical inference using partially observed Markov processes

Language: R - Size: 1.03 GB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 116 - Forks: 27

lcgroff2/Research-Backup

Backup of grad school data, dissertation, postdoc LabVIEW software, etc.

Language: PostScript - Size: 439 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 0

larsgeb/hmclab

Language: Jupyter Notebook - Size: 70.1 MB - Last synced at: 12 days ago - Pushed at: about 1 month ago - Stars: 29 - Forks: 1

GPflow/GPflow

Gaussian processes in TensorFlow

Language: Python - Size: 374 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 1,874 - Forks: 430

YannisZa/GeNSIT

Generating Neural Spatial Interaction Tables

Language: Jupyter Notebook - Size: 81.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 2

florent-leclercq/Bayes_InfoTheory

Lectures on Bayesian statistics and information theory

Language: Jupyter Notebook - Size: 47.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 31 - Forks: 4

ridhoma/monte-cafe

My learning journal studying Markov-Chain Monte Carlo methods

Language: Jupyter Notebook - Size: 16.9 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

fehiepsi/rethinking-numpyro

Statistical Rethinking (2nd ed.) with NumPyro

Language: Jupyter Notebook - Size: 143 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 458 - Forks: 75

acdmammoths/ROhAN-code

ROhAN: Row-Order Agnostic Null Models for Statistically-sound Knowledge Discovery

Language: Java - Size: 2.15 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 1

jchristopherson/fstats

A modern Fortran statistical library.

Language: Fortran - Size: 5.23 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 15 - Forks: 1

giladturok/drghmc Fork of flatironinstitute/bayes-kit

[AIStats 2025] Sampling From Multiscale Densities With Delayed Rejection Generalized Hamiltonian Monte Carlo.

Language: Jupyter Notebook - Size: 456 MB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 7 - Forks: 1

TuringLang/EllipticalSliceSampling.jl

Julia implementation of elliptical slice sampling.

Language: Julia - Size: 347 KB - Last synced at: 9 days ago - Pushed at: about 2 months ago - Stars: 16 - Forks: 6

mschauer/ZigZagBoomerang.jl

Sleek implementations of the ZigZag, Boomerang and other assorted piecewise deterministic Markov processes for Markov Chain Monte Carlo including Sticky PDMPs for variable selection

Language: Julia - Size: 37.4 MB - Last synced at: 15 days ago - Pushed at: almost 3 years ago - Stars: 103 - Forks: 7

chmc-mcmc/mathematica

Markov Chain Monte Carlo

Language: Mathematica - Size: 48.3 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

lbelzile/MATH80601A

Course notes for "Bayesian modelling" (MATH80601A)

Language: TeX - Size: 236 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

MFreidank/pysgmcmc

Bayesian Deep Learning with Stochastic Gradient MCMC Methods

Language: Python - Size: 12.1 MB - Last synced at: about 2 months ago - Pushed at: almost 4 years ago - Stars: 39 - Forks: 8

lucadellalib/bayestorch

Lightweight Bayesian deep learning library for fast prototyping based on PyTorch

Language: Python - Size: 104 KB - Last synced at: 11 days ago - Pushed at: over 2 years ago - Stars: 13 - Forks: 0

ngalioto/mcmc-samplers

A Python package for MCMC sampling.

Language: Python - Size: 407 KB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

dkanungo/Probabilistic-ML-for-finance-and-investing

Probabilistic Machine Learning for Finance and Investing: A Primer to Generative AI with Python

Language: Jupyter Notebook - Size: 2.15 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 95 - Forks: 41

ksachdeva/rethinking-tensorflow-probability

Statistical Rethinking (2nd Ed) with Tensorflow Probability

Language: Jupyter Notebook - Size: 321 MB - Last synced at: 2 months ago - Pushed at: over 3 years ago - Stars: 270 - Forks: 50

FranxYao/Deep-Generative-Models-for-Natural-Language-Processing

DGMs for NLP. A roadmap.

Size: 32 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 390 - Forks: 32

eigenfoo/littlemcmc

A lightweight and performant implementation of HMC and NUTS in Python, spun out of the PyMC project.

Language: Python - Size: 730 KB - Last synced at: 21 days ago - Pushed at: 11 months ago - Stars: 56 - Forks: 10

helske/bssm

Bayesian Inference of State Space Models

Language: HTML - Size: 63.4 MB - Last synced at: 27 days ago - Pushed at: 10 months ago - Stars: 43 - Forks: 14

PauloCarvalhoRJ/gammaray

GammaRay: a graphical interface to GSLib and other geomodeling algorithms. *NEW* in May, 6th: Drift analysis.

Language: C++ - Size: 795 MB - Last synced at: 3 months ago - Pushed at: 7 months ago - Stars: 42 - Forks: 15

prmiles/pymcmcstat

Python implementation of MATLAB toolbox "mcmcstat"

Language: Jupyter Notebook - Size: 9.06 MB - Last synced at: 1 day ago - Pushed at: almost 3 years ago - Stars: 71 - Forks: 11

zoj613/OccuSpytial

A package for fast bayesian analysis of single season spatial occupancy models.

Language: Python - Size: 483 KB - Last synced at: 14 days ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 1

madsjulia/AffineInvariantMCMC.jl

Affine Invariant Markov Chain Monte Carlo (MCMC) Ensemble sampler

Language: Julia - Size: 735 KB - Last synced at: 8 days ago - Pushed at: 8 months ago - Stars: 32 - Forks: 11

draktr/monte-library

Monte is a set of Monte Carlo methods in Python. The package is written to be flexible, clear to understand and encompass variety of Monte Carlo methods.

Language: Python - Size: 114 KB - Last synced at: 14 days ago - Pushed at: 9 months ago - Stars: 4 - Forks: 0

alexross-o/ising_model_mcmc_tcc_methods_comp_sim

Language: Python - Size: 12.7 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

UQatKIT/MTMLDA

Parallelized MLDA Sampler based on Prefetching

Language: Python - Size: 1.34 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

cevenkadir/NeuralQuantumStates.jl

Neural quantum states in Julia

Language: Julia - Size: 1.14 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

Irvinazo/Computo-Cientifico

Tareas correspondientes al curso de Cómputo Científico del programa de maestría en proba y estadística del CIMAT. Entre los temas de las tareas se encuentran álgebra lineal numérica, simulación estocástica, algoritmo MCMC. Los códigos fueron hechos en Python. Los mismos no están del todo optimizados

Language: TeX - Size: 12.6 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

Danielwohlr/bayesian-height-data-analysis

Bayesian analysis of children's height data from Galton's experiment. Finished 2022

Language: R - Size: 9.37 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

aymeric-roucher/predicting_bordeaux_wine_prices

Language: Jupyter Notebook - Size: 352 KB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 4

Igodlab/ml-book

Notes of 'Probabilistic Machine Learning: Advanced Topics' by Kevin Murphy

Language: Jupyter Notebook - Size: 2.45 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

avehtari/rhat_ess

Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of MCMC

Language: HTML - Size: 70.4 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 31 - Forks: 5

UQatKIT/LS-MCMC

A light-weight library for large-scale Markov Chain Monte Carlo sampling

Language: Python - Size: 235 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 1 - Forks: 0

cardiacbiomechanicsgroup/MCMC_cardiomyocyte_VO_growth

Markov Chain Monte Carlo Analysis of cardiomyocyte hypertrophy in experimental volume overload. Bracamonte et al. (2024) PLOS Computational Biology

Size: 1.99 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

davidnabergoj/nfmc

This package implements various flow-based MCMC algorithms for statistical analyses and sampling.

Language: Python - Size: 2.22 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0

zang-langyan/Markov-Chain-Monte-Carlo-MCMC

Markov Chain Monte Carlo MCMC methods are implemented in various languages (including R, Python, Julia, Matlab)

Language: Python - Size: 27.3 KB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 28 - Forks: 3

mukeshramancha/transitional-mcmc

This repo contains the code of Transitional Markov chain Monte Carlo algorithm

Language: Python - Size: 24.1 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 18 - Forks: 2

davidnabergoj/nfmc-nf-evaluation

NFMC benchmark and code for the paper: "Nabergoj and Štrumbelj. Empirical evaluation of normalizing flows in Markov Chain Monte Carlo, 2024."

Language: Jupyter Notebook - Size: 428 KB - Last synced at: 3 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 0

devries/godevo

A differential evolution and Markov chain Monte Carlo differential evolution package in Go

Language: Go - Size: 21.5 KB - Last synced at: 8 days ago - Pushed at: over 6 years ago - Stars: 6 - Forks: 1

jiedxu/TidySimStat

Stochastic Simulation and Statistics in Tidyverse

Language: Jupyter Notebook - Size: 102 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 1

PietropaoloFrisoni/Markov_Chain_Monte_Carlo_spinfoams

Codes and notebooks for the application of Markov Chain Monte Carlo in spinfoams. Computation of boundary observables, correlation functions and entanglement entropy.

Language: Julia - Size: 119 MB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

clberube/BISIP

BISIP | Bayesian inversion of spectral induced polarization laboratory data

Language: Python - Size: 163 MB - Last synced at: 6 days ago - Pushed at: 7 months ago - Stars: 10 - Forks: 4

arm61/uravu

A straightforward Bayesian data fitting library

Language: Python - Size: 1.67 MB - Last synced at: 1 day ago - Pushed at: 8 months ago - Stars: 26 - Forks: 4

uncomplicate/bayadera

High-performance Bayesian Data Analysis on the GPU in Clojure

Language: Clojure - Size: 1020 KB - Last synced at: about 1 month ago - Pushed at: almost 5 years ago - Stars: 365 - Forks: 23

GMPtk/RVis

Open access PBPK modelling platform

Language: C# - Size: 2.89 MB - Last synced at: 8 months ago - Pushed at: 9 months ago - Stars: 5 - Forks: 1

607011/Belletristiq

Generating text with Markov chains

Language: C++ - Size: 1.49 MB - Last synced at: about 1 month ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0

phuijse/MonteCarloBook

Repositorio de la unidad 2 del curso INFO274: Simulación, Instituto de Informática, UACh

Language: Jupyter Notebook - Size: 36 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 4

eggplantbren/AndromedaMixture

The inference code for our Nature paper about globular clusters in M31/Andromeda.

Language: C++ - Size: 42 KB - Last synced at: 3 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 1

louisaslett/PhaseType

R package for inference with Phase-type distributions

Language: C - Size: 134 KB - Last synced at: 3 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

nifleisch/approximate-bayesian-computation

Application of rejection sampling and markov chain monte carlo (MCMC) algorithms to approximate bayesian computation (ABC). The project includes application of ABC to model the pharmacokinetics of theophylline.

Language: Python - Size: 3.06 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

ammahmoudi/Stochastic-Processes

Homework Solutions for Stochastic Processes Course as Computer Science B.Sc. Student at Department of Mathematical Sciences, Sharif University of Technology

Language: Jupyter Notebook - Size: 1.92 MB - Last synced at: 21 days ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

aryan-cs/metro-hast

a visualization of the metropolis-hastings algorithm, a markov chain monte carlo method which utilizes dependent sampling for high-dimensional distributions

Language: JavaScript - Size: 37.1 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

eggplantbren/DNest5

Diffusive Nested Sampling like you've never seen it before

Language: C++ - Size: 145 KB - Last synced at: 12 days ago - Pushed at: 10 months ago - Stars: 8 - Forks: 1

Joseph94m/MCMC

Implementation of Markov Chain Monte Carlo in Python from scratch

Language: Jupyter Notebook - Size: 11.1 MB - Last synced at: 10 months ago - Pushed at: almost 5 years ago - Stars: 201 - Forks: 83

daniyarghani/pbct

Python code to fit parsimonious Markov models

Language: Jupyter Notebook - Size: 359 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

MooersLab/arviz-voice-in

Library of voice-triggered code snippets for arviz using Voice In Jupyter Notebooks

Size: 20.5 KB - Last synced at: 3 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

wgurecky/CORRLA_RS

Correlation, sampling, sensitivity, inference and random linear algebra routines in rust

Language: Rust - Size: 180 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

fesihkeskin/Driving_Cycle

A Data-Driven Framework for Driving Cycle Generation and Analysis

Language: Jupyter Notebook - Size: 37.3 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

UBC-Stat-ML/blangSDK

Blang's software development kit

Language: Xtend - Size: 3.09 MB - Last synced at: 4 days ago - Pushed at: 11 months ago - Stars: 24 - Forks: 6

USCbiostats/fmcmc

A friendly MCMC framework

Language: R - Size: 16.1 MB - Last synced at: 1 day ago - Pushed at: 18 days ago - Stars: 16 - Forks: 7

ermongroup/a-nice-mc

Code for "A-NICE-MC: Adversarial Training for MCMC"

Language: Jupyter Notebook - Size: 6.42 MB - Last synced at: 3 months ago - Pushed at: almost 7 years ago - Stars: 126 - Forks: 28

gauenk/smjp

Python code for posterior sampling of a semi-Markov Jump Process

Language: Python - Size: 124 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

alxsrobert/o2geosocial

Reconstruction of Transmission Chains from Surveillance Data

Language: R - Size: 267 MB - Last synced at: 4 days ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 2

statphysandml/MCMCEvaluationLib

Python library for the evaluation of simulation data. The library provides functionalities to load simulation results into Python, to perform standard evaluation algorithms for Markov Chain Monte Carlo algorithms. It further can be used to generate a pytorch dataset from the simulation data.

Language: Python - Size: 45.9 KB - Last synced at: 7 months ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0

VinylBr/EE769_MLMethods_from_scratch

Coding ML models, Sampling Methods, Feature Selection algorithms from scratch

Language: Jupyter Notebook - Size: 3.43 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

cqsl/neural-cluster-update

Code for 'Unbiased Monte Carlo Cluster Updates with Autoregressive Neural Networks'.

Language: Python - Size: 30.3 KB - Last synced at: 7 months ago - Pushed at: over 3 years ago - Stars: 9 - Forks: 1

chinghao0703/Bayesian-Inference-covid-antibody-test

Language: HTML - Size: 708 KB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

carlosgorlongaiatto/LabLOCP_B_Project

Time-scale correction for d18O data using Bayesian inference.

Language: Jupyter Notebook - Size: 17.7 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 3

erathorn/MCPhylo.jl

(Hierarchical) Phylogenetic Models in Julia

Language: Julia - Size: 13.2 MB - Last synced at: 6 days ago - Pushed at: 12 months ago - Stars: 7 - Forks: 3

matt77hias/StochasticExperiments 📦

📈 Course Deterministic and Stochastic Integration Techniques: Stochastic experiments

Language: Python - Size: 924 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0

quasar-chunawala/calculus_based_probability

Topics in Probability Theory and Stochastic Processes

Language: Jupyter Notebook - Size: 9.78 MB - Last synced at: 7 months ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 1

selotape/G-PhoCS Fork of gphocs-dev/G-PhoCS

G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.

Language: C++ - Size: 3 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

AlexIoannides/pymc-advi-hmc-demo

Demonstrating HMC and ADVI algorithms for Bayesian data analysis using PYMC3.

Language: Jupyter Notebook - Size: 397 KB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 14 - Forks: 4

timudk/introduction_to_mcmc

A brief introduction to Markov chain Monte Carlo methods

Language: Python - Size: 1.5 MB - Last synced at: 3 months ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 0

ant-louis/cryptanalysis-mcmc

Decrypting a message encoded by substitution cipher using Markov chain Monte Carlo.

Language: MATLAB - Size: 2.53 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

Related Keywords
markov-chain-monte-carlo 216 bayesian-inference 67 mcmc 45 python 26 bayesian-statistics 24 markov-chain 21 machine-learning 21 statistics 18 r 16 metropolis-hastings 16 monte-carlo 13 variational-inference 12 monte-carlo-simulation 11 hamiltonian-monte-carlo 11 bayesian 11 physics 8 probabilistic-programming 8 gibbs-sampling 8 mcmc-sampler 7 sampling-methods 7 stochastic-processes 7 bayesian-data-analysis 7 time-series 7 simulation 7 nested-sampling 6 data-science 6 data-analysis 6 stan 5 regression 5 markov-model 5 particle-filter 5 sequential-monte-carlo 5 monte-carlo-methods 5 mathematics 5 neural-networks 5 julia 5 astronomy 4 variational-monte-carlo 4 bayesian-methods 4 high-performance-computing 4 tensorflow 4 r-package 4 pymc3 4 hmc 4 cpp 4 probabilistic-models 4 numpy 4 neutrino 4 jags 4 sampling 4 julia-language 3 ising-model 3 pytorch 3 probability 3 uncertainty-quantification 3 rejection-sampling 3 metropolis-monte-carlo 3 laplace-approximation 3 approximate-bayesian-computation 3 phylogenetics 3 bioinformatics 3 probabilistic-graphical-models 3 parallel-computing 3 statistical-mechanics 3 covid-19 3 quantum 3 state-space 3 deep-learning 3 hamiltonian 3 jax 3 physics-simulation 3 hierarchical-models 3 mathematical-modelling 3 bootstrap 3 inference 3 geophysics 2 inversion 2 maximum-likelihood-estimation 2 finance 2 hidden-markov-model 2 delayed-rejection 2 gaussian-processes 2 adaptive-metropolis 2 baysian-inference 2 markov-chains 2 bayesian-neural-networks 2 stochastic 2 metropolis 2 time-series-analysis 2 bouncy-particle-sampler 2 numerics 2 posterior-probability 2 simulated-annealing 2 bayesian-computing 2 information-theory 2 likelihood-free-inference 2 law-of-large-numbers 2 causal-inference 2 cosmology 2 interpolation 2