GitHub topics: bayesian
CCS-Lab/hBayesDM
Hierarchical Bayesian modeling of RLDM tasks, using R & Python
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CWWhitney/hortiprimed
Process of modeling the expected effects of priming tomato plants
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Maarten14C/rbacon
A package for Bayesian age-depth modelling of sediment cores, constrained by prior information on sedimentation rates and their variability
Language: R - Size: 78.6 MB - Last synced at: about 20 hours ago - Pushed at: 1 day ago - Stars: 7 - Forks: 2
khteh/pAIthon
Exploration of python language features and AI/ML.
Language: Python - Size: 231 MB - Last synced at: about 24 hours ago - Pushed at: 1 day ago - Stars: 1 - Forks: 0
ollie-hulme/BayesianModels
This is a repo for the course Bayesian modelling of brains, minds and behavior
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SHI-Yu-Zhe/awesome-agi-cocosci
An awesome & curated list for Artificial General Intelligence, an emerging inter-discipline field that combines artificial intelligence and computational cognitive sciences.
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saudiwin/idealstan
idealstan offers item-response theory (IRT) ideal-point estimation for binary, ordinal, counts and continuous responses with time-varying and missing-data inference. Latent space model also included. Full and approximate Bayesian sampling with 'Stan' (www.mc-stan.org).
Language: R - Size: 91.3 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 55 - Forks: 12
jayarnim/BAYES-BTTN
Practice Bayesian Attention Modules
Language: Python - Size: 43 KB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 0 - Forks: 0
TGuillerme/mulTree
Performs MCMCglmm on multiple phylogenetic trees
Language: R - Size: 7.44 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 12 - Forks: 3
NIFTy-PPL/J-UBIK
Universal Bayesian Imaging Kit for the removal of instrument caused degradations and calibration
Language: Python - Size: 56.1 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 2 - Forks: 1
PecanProject/pecan
The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
Language: R - Size: 409 MB - Last synced at: 1 day ago - Pushed at: 5 days ago - Stars: 219 - Forks: 256
stan-dev/stan
Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
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koenderks/sasr
This is the source code for Statistical Audit Sampling with R (SASR), an online book intended as a practical guide to Bayesian and classical auditing in the programming language R, with hands-on examples. Read the full book for free at https://koenderks.github.io/sasr.
Language: R - Size: 452 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 1 - Forks: 0
bertdv/BMLIP
Course 5SSD0 - Bayesian Machine Learning and Information Processing
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pyro-ppl/pyro
Deep universal probabilistic programming with Python and PyTorch
Language: Python - Size: 93.5 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 8,724 - Forks: 986
stan-dev/bayesplot
bayesplot R package for plotting Bayesian models
Language: R - Size: 386 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 436 - Forks: 83
jordandeklerk/pyloo
Python package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS) for Bayesian Modeling
Language: Python - Size: 4.2 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 1
google/lightweight_mmm
LightweightMMM 🦇 is a lightweight Bayesian Marketing Mix Modeling (MMM) library that allows users to easily train MMMs and obtain channel attribution information.
Language: Python - Size: 12.7 MB - Last synced at: about 14 hours ago - Pushed at: 19 days ago - Stars: 957 - Forks: 213
arviz-devs/arviz
Exploratory analysis of Bayesian models with Python
Language: Python - Size: 119 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 1,671 - Forks: 434
wwrechard/pydlm
A python library for Bayesian time series modeling
Language: Python - Size: 3.32 MB - Last synced at: 5 days ago - Pushed at: 8 months ago - Stars: 484 - Forks: 98
avehtari/BDA_course_Aalto
Bayesian Data Analysis course at Aalto
Language: TeX - Size: 440 MB - Last synced at: 2 days ago - Pushed at: 3 months ago - Stars: 2,193 - Forks: 560
MingchaoZhu/DeepLearning
Python for《Deep Learning》，该书为《深度学习》(花书) 数学推导、原理剖析与源码级别代码实现
Language: Python - Size: 31.8 MB - Last synced at: 8 days ago - Pushed at: almost 5 years ago - Stars: 6,878 - Forks: 1,372
pglpm/inferno
R-package development for "Bayesian nonparametric inference". In other words, just the direct application of probability theory to get the most general, principled, model-free inference we can have.
Language: TeX - Size: 2.78 GB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 4 - Forks: 1
stan-dev/projpred
Projection predictive variable selection
Language: R - Size: 24.1 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 111 - Forks: 27
easystats/bayestestR
:ghost: Utilities for analyzing Bayesian models and posterior distributions
Language: R - Size: 154 MB - Last synced at: 6 days ago - Pushed at: 9 days ago - Stars: 580 - Forks: 56
avehtari/BDA_R_demos
Bayesian Data Analysis demos for R
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Hankanman/Area-Occupancy-Detection
A Home Assistant integration to accurately and intelligently track occupancy of an area
Language: Python - Size: 1.38 MB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 60 - Forks: 1
n-kall/priorsense
priorsense: an R package for prior diagnostics and sensitivity
Language: R - Size: 9.75 MB - Last synced at: 8 days ago - Pushed at: 9 days ago - Stars: 59 - Forks: 9
gempy-project/gempy
GemPy is an open-source, Python-based 3-D structural geological modeling software, which allows the implicit (i.e. automatic) creation of complex geological models from interface and orientation data. It also offers support for stochastic modeling to address parameter and model uncertainties.
Language: Python - Size: 514 MB - Last synced at: 9 days ago - Pushed at: 12 days ago - Stars: 1,076 - Forks: 245
gpstuff-dev/gpstuff
GPstuff - Gaussian process models for Bayesian analysis
Language: MATLAB - Size: 67.2 MB - Last synced at: 9 days ago - Pushed at: over 2 years ago - Stars: 174 - Forks: 61
arviz-devs/InferenceObjects.jl
Storage for results of Bayesian inference
Language: Julia - Size: 1.92 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 14 - Forks: 1
arviz-devs/ArviZ.jl
Exploratory analysis of Bayesian models with Julia
Language: Julia - Size: 135 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 109 - Forks: 10
mach3-software/MaCh3Tutorial
Tutorial how to use MaCh3
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easystats/report
:scroll: :tada: Automated reporting of objects in R
Language: R - Size: 19 MB - Last synced at: 9 days ago - Pushed at: 14 days ago - Stars: 700 - Forks: 70
r-spatial/spatialreg
spatialreg: spatial models estimation and testing
Language: R - Size: 8.09 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 47 - Forks: 11
BaRatin-tools/BaRatin-tools.github.io
BaRatin website
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m-clark/Miscellaneous-R-Code
Code that might be useful to others for learning/demonstration purposes, specifically along the lines of modeling and various algorithms. **Superseded by the models-by-example repo**.
Language: R - Size: 11.2 MB - Last synced at: 7 days ago - Pushed at: over 4 years ago - Stars: 196 - Forks: 82
hsbadr/bayesian
Bindings for Bayesian TidyModels
Language: R - Size: 6.7 MB - Last synced at: 8 days ago - Pushed at: 13 days ago - Stars: 47 - Forks: 3
stan-dev/cmdstanr
CmdStanR: the R interface to CmdStan
Language: R - Size: 27.6 MB - Last synced at: 8 days ago - Pushed at: 12 days ago - Stars: 146 - Forks: 65
BEAST-Fitting/beast
Bayesian Extinction And Stellar Tool
Language: Python - Size: 6.84 MB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 25 - Forks: 36
DucPhamBP/Statistics-for-Data-Science
Final project for the course "Statistics for Data Science" (the University of Pisa, LM Data Science and Business Informatics)
Language: R - Size: 2.22 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0
stan-dev/posteriordb
Database with posteriors of interest for Bayesian inference
Language: Stan - Size: 71.5 MB - Last synced at: 8 days ago - Pushed at: 8 months ago - Stars: 193 - Forks: 40
EbTech/Elo-MMR
Skill estimation systems for multiplayer competitions
Language: C++ - Size: 214 MB - Last synced at: 1 day ago - Pushed at: about 2 months ago - Stars: 193 - Forks: 23
arthur-batel/IMPACT
Repository contaning the original code of IMPACT algorithm, an interpretable model for multi-target predictions with multi-class outputs"
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probcomp/Gen.jl
A general-purpose probabilistic programming system with programmable inference
Language: Julia - Size: 28.1 MB - Last synced at: 10 days ago - Pushed at: 25 days ago - Stars: 1,811 - Forks: 162
easystats/correlation
:link: Methods for Correlation Analysis
Language: R - Size: 159 MB - Last synced at: 6 days ago - Pushed at: 12 days ago - Stars: 440 - Forks: 57
js05212/BayesianDeepLearning-Survey
Bayesian Deep Learning: A Survey
Size: 454 KB - Last synced at: 2 days ago - Pushed at: 5 months ago - Stars: 513 - Forks: 62
chvandorp/hboms
Python package for automatically generating Stan source code for hierarchical Bayesian ordinary differential equation models.
Language: Jupyter Notebook - Size: 2.92 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 0 - Forks: 0
stan-dev/loo
loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)
Language: R - Size: 111 MB - Last synced at: 8 days ago - Pushed at: 16 days ago - Stars: 153 - Forks: 34
winstxnhdw/AutoCarROS2
A virtual simulation platform for autonomous vehicle sensing, mapping, control and behaviour methods using ROS 2 and Gazebo.
Language: Python - Size: 81.6 MB - Last synced at: 13 days ago - Pushed at: over 2 years ago - Stars: 329 - Forks: 58
NeilPandya/lazyprogrammer-examples Fork of lazyprogrammer/machine_learning_examples
A collection of machine learning examples and tutorials from Lazy Programmer.
Language: Python - Size: 22.5 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 0 - Forks: 0
usnistgov/FCpy
Feldman-Cousins Confidence Interval Calculation
Language: Python - Size: 2.19 MB - Last synced at: 9 days ago - Pushed at: 9 months ago - Stars: 6 - Forks: 4
dokester/BayesicFitting
Bayesian fitting package
Language: Jupyter Notebook - Size: 41.4 MB - Last synced at: 16 days ago - Pushed at: about 1 month ago - Stars: 54 - Forks: 8
ericmjl/bayesian-stats-modelling-tutorial
How to do Bayesian statistical modelling using numpy and PyMC3
Language: Jupyter Notebook - Size: 96.6 MB - Last synced at: 8 days ago - Pushed at: almost 3 years ago - Stars: 664 - Forks: 279
anand-me/Spring24VicarMLTutorial
Collab Notebook Learned and Implemented During Spring 2024
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quantumjot/btrack
Bayesian multi-object tracking
Language: Python - Size: 16.1 MB - Last synced at: 8 days ago - Pushed at: 8 months ago - Stars: 318 - Forks: 49
nk027/bvar
Toolkit for the estimation of hierarchical Bayesian vector autoregressions. Implements hierarchical prior selection for conjugate priors in the fashion of Giannone, Lenza & Primiceri (2015). Allows for the computation of impulse responses and forecasts and provides functionality for assessing results.
Language: R - Size: 5.72 MB - Last synced at: 15 days ago - Pushed at: 5 months ago - Stars: 54 - Forks: 21
sony/sqvae
Pytorch implementation of stochastically quantized variational autoencoder (SQ-VAE)
Language: Python - Size: 158 KB - Last synced at: 12 days ago - Pushed at: almost 3 years ago - Stars: 187 - Forks: 23
neuropsychology/psycho.R
An R package for experimental psychologists
Language: R - Size: 7.36 MB - Last synced at: 6 days ago - Pushed at: about 1 year ago - Stars: 149 - Forks: 32
Harry24k/bayesian-neural-network-pytorch
PyTorch implementation of bayesian neural network [torchbnn]
Language: Python - Size: 22.2 MB - Last synced at: 16 days ago - Pushed at: 9 months ago - Stars: 521 - Forks: 83
ropensci/stantargets
Reproducible Bayesian data analysis pipelines with targets and cmdstanr
Language: R - Size: 1.66 MB - Last synced at: 6 days ago - Pushed at: 2 months ago - Stars: 49 - Forks: 10
koenderks/jfa
jfa is an R package that provides statistical methods for auditing. Its functionality and intended workflow are implemented with a graphical user interface in the Audit module of JASP (https://jasp-stats.org), a free and open-source software program for statistical analyses.
Language: R - Size: 92.5 MB - Last synced at: 8 days ago - Pushed at: 19 days ago - Stars: 8 - Forks: 6
englianhu/binary.com-interview-question
次元期权应征面试题范例。 #易经 #道家 #十二生肖 #姓氏堂号子嗣贞节牌坊 #天文历法 #张灯结彩 #农历 #夜观星象 #廿四节气 #算卜 #紫微斗数 #十二时辰 #生辰八字 #命运 #风水 《始祖赢政之子赢家黄氏江夏堂联富•秦谏——大秦赋》 万般皆下品，唯有读书高。🚩🇨🇳🏹🦔中科红旗，歼灭所有世袭制可兰经法家回教徒巫贼巫婆、洋番、峇峇娘惹。https://gitee.com/englianhu
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stan-dev/posterior
The posterior R package
Language: R - Size: 4.22 MB - Last synced at: 8 days ago - Pushed at: 20 days ago - Stars: 168 - Forks: 24
iiasa/ibis.iSDM
Modelling framework for creating Integrated SDMS
Language: R - Size: 426 MB - Last synced at: about 4 hours ago - Pushed at: 12 days ago - Stars: 20 - Forks: 4
RuthAngus/stardate
Combining dating methods for better stellar ages
Language: Jupyter Notebook - Size: 201 MB - Last synced at: 6 days ago - Pushed at: over 5 years ago - Stars: 11 - Forks: 9
vdorie/stan4bart
Uses Stan sampler and math library to semiparametrically fit linear and multilevel models with additive Bayesian Additive Regression Tree (BART) components.
Language: C++ - Size: 7.22 MB - Last synced at: 2 days ago - Pushed at: 8 months ago - Stars: 42 - Forks: 4
jamiemcg/BUSCO_phylogenomics
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
Language: Python - Size: 347 KB - Last synced at: 10 days ago - Pushed at: 6 months ago - Stars: 64 - Forks: 9
avehtari/BDA_py_demos
Bayesian Data Analysis demos for Python
Language: Jupyter Notebook - Size: 12.2 MB - Last synced at: 12 days ago - Pushed at: over 1 year ago - Stars: 1,008 - Forks: 301
wjakethompson/measr
R package for the Bayesian estimation of diagnostic classification models using Stan
Language: R - Size: 153 MB - Last synced at: 6 days ago - Pushed at: 23 days ago - Stars: 10 - Forks: 4
stan-dev/shinystan
shinystan R package and ShinyStan GUI
Language: R - Size: 32.9 MB - Last synced at: 10 days ago - Pushed at: 3 months ago - Stars: 199 - Forks: 47
stan-dev/rstanarm
rstanarm R package for Bayesian applied regression modeling
Language: R - Size: 117 MB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 391 - Forks: 135
tpapp/DynamicHMC.jl
Implementation of robust dynamic Hamiltonian Monte Carlo methods (NUTS) in Julia.
Language: Julia - Size: 1.15 MB - Last synced at: 11 days ago - Pushed at: 3 months ago - Stars: 250 - Forks: 21
sujit-sahu/bmstdr
This is the repository for the R package bmstdr.
Language: R - Size: 36.5 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 16 - Forks: 3
SysBioChalmers/DLKcat
Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction
Language: Python - Size: 46.2 MB - Last synced at: 15 days ago - Pushed at: almost 2 years ago - Stars: 151 - Forks: 57
tpapp/AltDistributions.jl
Implementations for some distributions using a consistent API and AD-friendly code.
Language: Julia - Size: 204 KB - Last synced at: 6 days ago - Pushed at: 24 days ago - Stars: 5 - Forks: 3
kthohr/BayesianQuantileRegression
Bayesian Quantile Regression
Language: C++ - Size: 69.3 KB - Last synced at: 16 days ago - Pushed at: 25 days ago - Stars: 3 - Forks: 0
quantopian/bayesalpha
Bayesian models to compute performance and uncertainty of returns and alpha.
Language: Python - Size: 1.91 MB - Last synced at: 8 days ago - Pushed at: about 2 years ago - Stars: 110 - Forks: 59
brian-lau/MatlabStan
Matlab interface to Stan, a package for Bayesian inference
Language: Matlab - Size: 923 KB - Last synced at: 9 days ago - Pushed at: about 2 years ago - Stars: 82 - Forks: 47
jbolstad/hbamr
Hierarchical Bayesian Aldrich-McKelvey Scaling in R via Stan
Language: R - Size: 8.57 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 2 - Forks: 0
MangiolaLaboratory/sccomp
Mixed-effect model to test differences in cell type proportions from single-cell data, in R
Language: R - Size: 97.7 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 100 - Forks: 8
bsvars/bvarPANELs
Forecasting with Bayesian Hierarchical Panel Vector Autoregressions
Language: R - Size: 15.7 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 3 - Forks: 0
arh926/spWombling
R-package for performing curvilinear Bayesian Wombling on spatial data. Required for the paper titled, "Bayesian Modeling with Spatial Curvature Processes"
Language: R - Size: 1.26 MB - Last synced at: 8 days ago - Pushed at: 27 days ago - Stars: 2 - Forks: 0
FBartos/RoBSA
RoBSA R package for estimating robust Bayesian survival analyses
Language: R - Size: 158 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 7 - Forks: 0
jmgirard/rocker-bayes
Dockerfile for Bayesian analysis in R
Language: Shell - Size: 77.1 KB - Last synced at: 6 days ago - Pushed at: 27 days ago - Stars: 0 - Forks: 0
avehtari/modelselection
Case studies on model assessment, model selection and inference after model selection
Language: HTML - Size: 54.9 MB - Last synced at: 26 days ago - Pushed at: over 1 year ago - Stars: 171 - Forks: 36
JEFworks-Lab/HoneyBADGER
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
Language: R - Size: 52.8 MB - Last synced at: 24 days ago - Pushed at: almost 4 years ago - Stars: 96 - Forks: 31
m-clark/bayesian-basics
:no_entry_sign: :leftwards_arrow_with_hook: A document that introduces Bayesian data analysis.
Language: Stan - Size: 93 MB - Last synced at: 21 days ago - Pushed at: about 3 years ago - Stars: 83 - Forks: 26
jeffreypullin/rater
R package to fit statistical models to repeated categorical rating data using Stan
Language: R - Size: 31.3 MB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 17 - Forks: 3
ConnorDonegan/geostan
Bayesian spatial analysis
Language: R - Size: 171 MB - Last synced at: 6 days ago - Pushed at: 4 months ago - Stars: 79 - Forks: 6
BenZickel/torch_arima
ARIMA time series implementation in PyTorch with optional support for Bayesian priors.
Language: Python - Size: 18.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 1
gbuzzard/PnP-MACE
Utilities and methods to use the PnP algorithm and MACE framework on image reconstruction problems. Includes demos for superresolution and CT.
Language: Python - Size: 1.9 MB - Last synced at: 15 days ago - Pushed at: about 1 year ago - Stars: 18 - Forks: 5
Novartis/bamdd
Applied modelling in drug development: flexible Bayesian regression modelling in Stan via brms
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ColtAllen/btyd Fork of CamDavidsonPilon/lifetimes 📦
Buy Till You Die and Customer Lifetime Value statistical models in Python.
Language: Python - Size: 7.06 MB - Last synced at: about 1 hour ago - Pushed at: 11 months ago - Stars: 116 - Forks: 9
mach3-software/MaCh3
The official repository for MaCh3
Language: C++ - Size: 584 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 7 - Forks: 7
bayesgroup/deepbayes-2018
Seminars DeepBayes Summer School 2018
Language: Jupyter Notebook - Size: 25.4 MB - Last synced at: 8 days ago - Pushed at: over 5 years ago - Stars: 1,046 - Forks: 273
lawmurray/Birch
A probabilistic programming language that combines automatic differentiation, automatic marginalization, and automatic conditioning within Monte Carlo methods.
Language: C++ - Size: 13.2 MB - Last synced at: 15 days ago - Pushed at: 3 months ago - Stars: 115 - Forks: 14
Richard17425/298SEM_Gold-Price-Prediction
Bayesian Vector Autoregression (BVAR) to predict Gold price
Language: MATLAB - Size: 0 Bytes - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
himelmallick/IntegratedLearner
Integrated Machine Learning for Multi-omics Classification and Prediction
Language: HTML - Size: 22.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 19 - Forks: 7
moucheng2017/EM-BPL-Semi-Seg
[MICCAI 2022 Best Paper Finalist] Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi Supervised Segmentation
Language: Python - Size: 4.33 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 39 - Forks: 1
