GitHub topics: bayesian
mach3-software/MaCh3Tutorial
Tutorial how to use MaCh3
Language: C++ - Size: 38.4 MB - Last synced at: about 1 hour ago - Pushed at: about 1 hour ago - Stars: 8 - Forks: 1
MangiolaLaboratory/sccomp
Mixed-effect model to test differences in cell type proportions from single-cell data, in R
Language: R - Size: 101 MB - Last synced at: about 6 hours ago - Pushed at: about 7 hours ago - Stars: 106 - Forks: 8
nshen7/decemedip
An R package for deconvoluting cell types in bulk-tissue/cell-free MeDIP-seq data leveraging a Bayesian hierarchical model. Depends on RStan.
Language: C++ - Size: 71.3 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 3 - Forks: 1
stan-dev/stan
Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
Language: C++ - Size: 277 MB - Last synced at: 1 day ago - Pushed at: 4 days ago - Stars: 2,672 - Forks: 380
Maarten14C/rbacon
A package for Bayesian age-depth modelling of sediment cores, constrained by prior information on sedimentation rates and their variability
Language: R - Size: 97.3 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 7 - Forks: 2
matthiaskoenig/parameter-variability
Bayesian models for ODE models in the Systems Biology Markup Language (SBML)
Language: Python - Size: 5.09 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 1 - Forks: 0
LLerzy/FGM_Estimates
R code estimate the FGM copula's dependence parameter using classical and Bayesian methods. Applied to a dengue dataset, it focuses on leukocyte and platelet counts. Classical analysis employs maximum likelihood estimation y moments method, while the Bayesian approach uses Markov Chain Monte Carlo for posterior inference.
Language: R - Size: 18.1 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0
pyro-ppl/pyro
Deep universal probabilistic programming with Python and PyTorch
Language: Python - Size: 93.5 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 8,814 - Forks: 991
liamhaller/embrace-uncertainty
R code for "A Call to Embrace Uncertainty: Rethinking Statistical Inference in Migration Research"
Language: R - Size: 1.41 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0
giabaio/BCEAweb
A R/Shiny frontend to use BCEA
Language: R - Size: 3.41 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 1
stan-dev/loo
loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)
Language: R - Size: 115 MB - Last synced at: 5 days ago - Pushed at: 14 days ago - Stars: 154 - Forks: 36
mach3-software/MaCh3
The official repository for MaCh3
Language: C++ - Size: 695 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 7 - Forks: 7
easystats/correlation
:link: Methods for Correlation Analysis
Language: R - Size: 159 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 441 - Forks: 57
aghado01/surprise-learning-exploration-exploitation-wip
Transfer functional principles from the LC-NE system in primates to adaptive surprise-based learning in autonomous systems whilst learning some ropes along the way
Language: Python - Size: 283 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0
stan-dev/projpred
Projection predictive variable selection
Language: R - Size: 24.2 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 112 - Forks: 27
Novartis/bamdd
Applied modelling in drug development: flexible Bayesian regression modelling in Stan via brms
Language: HTML - Size: 64.5 MB - Last synced at: about 10 hours ago - Pushed at: 6 days ago - Stars: 22 - Forks: 6
arviz-devs/arviz
Exploratory analysis of Bayesian models with Python
Language: Python - Size: 121 MB - Last synced at: 6 days ago - Pushed at: about 2 months ago - Stars: 1,704 - Forks: 439
EricssonResearch/illia
Framework agnostic Bayesian Neural Network library
Language: Python - Size: 1.33 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 5 - Forks: 0
gempy-project/gempy
GemPy is an open-source, Python-based 3-D structural geological modeling software, which allows the implicit (i.e. automatic) creation of complex geological models from interface and orientation data. It also offers support for stochastic modeling to address parameter and model uncertainties.
Language: Python - Size: 453 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 1,129 - Forks: 255
SHI-Yu-Zhe/awesome-agi-cocosci
An awesome & curated list for Artificial General Intelligence, an emerging inter-discipline field that combines artificial intelligence and computational cognitive sciences.
Language: TeX - Size: 7.91 MB - Last synced at: 7 days ago - Pushed at: 9 days ago - Stars: 334 - Forks: 26
easystats/report
:scroll: :tada: Automated reporting of objects in R
Language: R - Size: 19.2 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 707 - Forks: 71
bydeng01/new2GPR
Gaussian Process Regression tutorial
Language: Jupyter Notebook - Size: 10.1 MB - Last synced at: 3 days ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
ConnorDonegan/geostan
Bayesian spatial analysis
Language: R - Size: 171 MB - Last synced at: 6 days ago - Pushed at: 7 months ago - Stars: 80 - Forks: 6
saudiwin/idealstan
idealstan offers item-response theory (IRT) ideal-point estimation for binary, ordinal, counts and continuous responses with time-varying and missing-data inference. Latent space model also included. Full and approximate Bayesian sampling with 'Stan' (www.mc-stan.org).
Language: R - Size: 91.7 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 55 - Forks: 12
georgeberry/blayers
The missing layers package for Bayesian inference
Language: Python - Size: 1.81 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 1 - Forks: 0
martinit18/nested_fit
Bayesian data analysis code for evidence and probability distribution calculation based on nested sampling algorithm
Language: Fortran - Size: 20.1 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 10 - Forks: 5
probcomp/Gen.jl
A general-purpose probabilistic programming system with programmable inference
Language: Julia - Size: 31.7 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 1,817 - Forks: 162
brendanhasz/probflow
A Python package for building Bayesian models with TensorFlow or PyTorch
Language: Python - Size: 3.23 MB - Last synced at: 6 days ago - Pushed at: almost 3 years ago - Stars: 176 - Forks: 16
PecanProject/pecan
The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
Language: R - Size: 410 MB - Last synced at: 6 days ago - Pushed at: 10 days ago - Stars: 219 - Forks: 262
stan-dev/bayesplot
bayesplot R package for plotting Bayesian models
Language: R - Size: 392 MB - Last synced at: about 8 hours ago - Pushed at: 4 days ago - Stars: 439 - Forks: 87
Hankanman/Area-Occupancy-Detection
A Home Assistant integration to accurately and intelligently track occupancy of an area
Language: Python - Size: 2.25 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 83 - Forks: 1
mrp-interface/shinymrp
A GUI for Multilevel Regression and Poststratification
Language: R - Size: 1.09 GB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 2 - Forks: 1
arcosx/PredictTheProduct 📦
中文电商商品类目预测
Language: Java - Size: 30.2 MB - Last synced at: 10 days ago - Pushed at: over 6 years ago - Stars: 12 - Forks: 5
BaRatin-tools/BaRatin-tools.github.io
BaRatin website
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avehtari/BDA_course_Aalto
Bayesian Data Analysis course at Aalto
Language: TeX - Size: 440 MB - Last synced at: 12 days ago - Pushed at: 6 months ago - Stars: 2,208 - Forks: 563
peterdunson/DMML-Survival-Analysis-NEW
Data Mining and Machine Learning at Big Data Summer Institute
Language: Python - Size: 130 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 1 - Forks: 0
easystats/bayestestR
:ghost: Utilities for analyzing Bayesian models and posterior distributions
Language: R - Size: 154 MB - Last synced at: 6 days ago - Pushed at: 13 days ago - Stars: 581 - Forks: 58
pglpm/inferno
R-package development for "Bayesian nonparametric inference". In other words, just the direct application of probability theory to get the most general, principled, model-free inference we can have.
Language: TeX - Size: 3.43 GB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 5 - Forks: 1
ai-med/quickNAT_pytorch
PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
Language: Python - Size: 342 MB - Last synced at: 8 days ago - Pushed at: over 4 years ago - Stars: 104 - Forks: 37
bsvars/bpvars
Forecasting with Bayesian Panel Vector Autoregressions
Language: C++ - Size: 15.5 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 4 - Forks: 1
ropensci/jagstargets
Reproducible Bayesian data analysis pipelines with targets and JAGS
Language: R - Size: 613 KB - Last synced at: 6 days ago - Pushed at: 7 months ago - Stars: 11 - Forks: 7
khteh/pAIthon
Exploration of python language features and AI/ML.
Language: Python - Size: 232 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 1 - Forks: 0
simonsays1980/bayespin
An R package for Bayesian estimation of the probability of informed trading.
Language: R - Size: 3.92 MB - Last synced at: 10 days ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 2
promised-ai/changepoint
A toolkit for Bayesian change point detection
Language: Jupyter Notebook - Size: 6.17 MB - Last synced at: about 8 hours ago - Pushed at: 12 months ago - Stars: 28 - Forks: 2
jmgirard/rocker-bayes
Dockerfile for Bayesian analysis in R
Language: Shell - Size: 84 KB - Last synced at: 11 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0
tpapp/DynamicHMC.jl
Implementation of robust dynamic Hamiltonian Monte Carlo methods (NUTS) in Julia.
Language: Julia - Size: 1.32 MB - Last synced at: 7 days ago - Pushed at: 15 days ago - Stars: 251 - Forks: 21
RezaSaadatyar/Machine-Learning-with-MATLAB
This repository contains a MATLAB-based Machine Learning Software (MLS) offers advanced biomedical signal processing with an intuitive GUI for analyzing EEG, ECG, and EMG. Features include noise filtering, feature extraction, dimensionality reduction, and customizable machine learning algorithms for tailored classification and analysis.
Language: MATLAB - Size: 26.2 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 0
levenc/posologyr
Model-Informed Precision Dosing (MIPD) with R
Language: R - Size: 13.1 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 14 - Forks: 1
himelmallick/IntegratedLearner
Integrated Machine Learning for Multi-omics Classification and Prediction
Language: HTML - Size: 29 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 21 - Forks: 8
dokester/BayesicFitting
Bayesian fitting package
Language: Python - Size: 42.5 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 55 - Forks: 8
sebhaan/TabPFGen
TabPFGen: Synthetic Tabular Data Generation with TabPFN
Language: Python - Size: 145 KB - Last synced at: 13 days ago - Pushed at: about 2 months ago - Stars: 14 - Forks: 0
wjakethompson/measr
R package for the Bayesian estimation of diagnostic classification models using Stan
Language: R - Size: 181 MB - Last synced at: 3 days ago - Pushed at: 17 days ago - Stars: 10 - Forks: 5
bsvars/bsvars.github.io
bsvars R packages environment
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chvandorp/hboms
Python package for automatically generating Stan source code for hierarchical Bayesian ordinary differential equation models.
Language: Jupyter Notebook - Size: 3.03 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0
YousefMohammad/Naive_Bayes_Implementation
The implementation of naive Bayes classification model using Bayesian statistics
Language: Jupyter Notebook - Size: 215 KB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 0 - Forks: 0
NIFTy-PPL/J-UBIK
Universal Bayesian Imaging Kit for the removal of instrument caused degradations and calibration
Language: Python - Size: 56.2 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 3 - Forks: 1
js05212/BayesianDeepLearning-Survey
Bayesian Deep Learning: A Survey
Size: 467 KB - Last synced at: about 10 hours ago - Pushed at: 20 days ago - Stars: 516 - Forks: 62
stefanciprian/rd
R & D
Language: Jupyter Notebook - Size: 89.4 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0
ygeunkim/bvhar
R and Python package to model Bayesian VAR and VHAR models
Language: C++ - Size: 464 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 6 - Forks: 2
adamlilith/mcmcHammer
Tools for anlaysis of MCMC chains
Language: R - Size: 1.91 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 1 - Forks: 0
r-spatial/spatialreg
spatialreg: spatial models estimation and testing
Language: R - Size: 8.15 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 49 - Forks: 11
alreich/alreich.github.io
I’m a retired mathematician. My area of specialty is Mathematical Statistics. I worked in industry for my entire career in the area of scientific computing.
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rongmon/rbvfit
A Bayesian Voigt profile fitter. Optimized for absorption line analysis.
Language: Jupyter Notebook - Size: 50.5 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 3 - Forks: 5
hsbadr/bayesian
Bindings for Bayesian TidyModels
Language: R - Size: 6.82 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 47 - Forks: 3
bertdv/BMLIP
Course 5SSD0 - Bayesian Machine Learning and Information Processing
Language: Jupyter Notebook - Size: 691 MB - Last synced at: 10 days ago - Pushed at: 3 months ago - Stars: 48 - Forks: 20
cxd/scala-au.id.cxd.math
Libraries containing math related functions in scala. Provides probability distributions and related operations.
Language: Scala - Size: 184 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 1 - Forks: 1
probabilists/lampe
Likelihood-free AMortized Posterior Estimation with PyTorch
Language: Python - Size: 4.09 MB - Last synced at: 24 days ago - Pushed at: 11 months ago - Stars: 130 - Forks: 13
iiasa/ibis.iSDM
Modelling framework for creating Integrated SDMS
Language: R - Size: 430 MB - Last synced at: 6 days ago - Pushed at: 25 days ago - Stars: 20 - Forks: 4
google/lightweight_mmm
LightweightMMM 🦇 is a lightweight Bayesian Marketing Mix Modeling (MMM) library that allows users to easily train MMMs and obtain channel attribution information.
Language: Python - Size: 12.7 MB - Last synced at: 23 days ago - Pushed at: 27 days ago - Stars: 973 - Forks: 214
theogf/BayesianQuadrature.jl
Is there anything we can't make Bayesian?
Language: Julia - Size: 286 KB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 15 - Forks: 0
elfi-dev/elfi
ELFI - Engine for Likelihood-Free Inference
Language: Python - Size: 2.15 MB - Last synced at: 21 days ago - Pushed at: 2 months ago - Stars: 276 - Forks: 62
n8thangreen/BCEA Fork of giabaio/BCEA
Bayesian Cost Effectiveness Analysis. Given the results of a Bayesian model (possibly based on MCMC) in the form of simulations from the posterior distributions of suitable variables of costs and clinical benefits for two or more interventions, produces a health economic evaluation. Compares one of the interventions (the "reference") to the others ("comparators"). Produces many summary and plots to analyse the results
Language: R - Size: 197 MB - Last synced at: 2 days ago - Pushed at: 12 days ago - Stars: 2 - Forks: 3
feng-li/texmf
Feng Li's texmf database
Language: TeX - Size: 14.1 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 3 - Forks: 2
ipw012/RIVER
R package for RIVER (RNA-Informed Variant Effect on Regulation)
Language: R - Size: 2.79 MB - Last synced at: 24 days ago - Pushed at: over 5 years ago - Stars: 12 - Forks: 4
stan-dev/posterior
The posterior R package
Language: R - Size: 4.32 MB - Last synced at: 5 days ago - Pushed at: 26 days ago - Stars: 168 - Forks: 25
koenderks/jfa
jfa is an R package that provides statistical methods for auditing. Its functionality and intended workflow are implemented with a graphical user interface in the Audit module of JASP (https://jasp-stats.org), a free and open-source software program for statistical analyses.
Language: R - Size: 92.8 MB - Last synced at: 13 days ago - Pushed at: 26 days ago - Stars: 8 - Forks: 6
stan-dev/posteriordb
Database with posteriors of interest for Bayesian inference
Language: Stan - Size: 71.6 MB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 202 - Forks: 41
quantumjot/btrack
Bayesian multi-object tracking
Language: Python - Size: 16.2 MB - Last synced at: 20 days ago - Pushed at: 3 months ago - Stars: 325 - Forks: 51
helske/walker
Bayesian Generalized Linear Models with Time-Varying Coefficients
Language: HTML - Size: 7.75 MB - Last synced at: 6 days ago - Pushed at: 11 months ago - Stars: 45 - Forks: 11
zhilinsu/social-influence_mPFC
Code and data for Su et al. (2025) PLOS Biology
Language: HTML - Size: 12 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 0 - Forks: 0
fortitudo-tech/entropy-pooling
Entropy Pooling in Python with a BSD 3-Clause license.
Language: Python - Size: 271 KB - Last synced at: 6 days ago - Pushed at: 9 months ago - Stars: 39 - Forks: 14
ljanss/Rbayz Fork of MarniTausen/BayzR
R package of bayz, a Bayesian mixed model and 'beyond mixed model' package
Language: C++ - Size: 3.39 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 0 - Forks: 0
angrysky56/mcts-mcp-server
Bayesian MCTS Model Context Protocol Server allowing Claude to control Ollama local models for Advanced MCTS and analysis.
Language: Python - Size: 1.29 MB - Last synced at: 15 days ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 2
n-kall/priorsense
priorsense: an R package for prior diagnostics and sensitivity
Language: R - Size: 10.1 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 63 - Forks: 9
sourestdeeds/firefly
Firefly (pip install firefly-tess) is a self-contained python EDA pipeline which uses TransitFit to fit TESS lightcurves (time-series data), capable of fully automating the data retrieval required.
Language: Python - Size: 131 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 2
stan-dev/rstanarm
rstanarm R package for Bayesian applied regression modeling
Language: R - Size: 117 MB - Last synced at: about 4 hours ago - Pushed at: about 2 months ago - Stars: 396 - Forks: 136
vdorie/stan4bart
Uses Stan sampler and math library to semiparametrically fit linear and multilevel models with additive Bayesian Additive Regression Tree (BART) components.
Language: C++ - Size: 7.22 MB - Last synced at: 19 days ago - Pushed at: 10 months ago - Stars: 43 - Forks: 4
stan-dev/cmdstanr
CmdStanR: the R interface to CmdStan
Language: R - Size: 27.7 MB - Last synced at: about 3 hours ago - Pushed at: 7 days ago - Stars: 150 - Forks: 65
astro-informatics/proxnest
Proximal Nested Sampling for high-dimensional Bayesian model selection
Language: Jupyter Notebook - Size: 15.9 MB - Last synced at: 8 days ago - Pushed at: about 1 year ago - Stars: 25 - Forks: 4
CCS-Lab/hBayesDM
Hierarchical Bayesian modeling of RLDM tasks, using R & Python
Language: TeX - Size: 58.5 MB - Last synced at: 19 days ago - Pushed at: 12 months ago - Stars: 242 - Forks: 115
GabrielOduori/lur_space_state_model
Embedding LUR in Space State models
Language: Python - Size: 27.3 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
CDCgov/RSTr
Rate Stabilizing Tool R Package: Gibbs Samplers for Bayesian Spatiotemporal CAR Models
Language: R - Size: 10.1 MB - Last synced at: 24 days ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 4
FBartos/BayesTools
BayesTools R package for simplifying the development of Bayesian analyses and model-averaging
Language: R - Size: 11.5 MB - Last synced at: 3 days ago - Pushed at: 28 days ago - Stars: 7 - Forks: 2
mach3-software/MaCh3-PythonUtils
Python Utils for use with MaCh3!
Language: Jupyter Notebook - Size: 23 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 3 - Forks: 0
daijiang/phyr
Functions for phylogenetic analyses
Language: R - Size: 34.4 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 32 - Forks: 10
marius311/MuseInference.jl
Fast approximate high-dimensional hierarchical Bayesian inference
Language: Julia - Size: 1.86 MB - Last synced at: 19 days ago - Pushed at: 12 months ago - Stars: 34 - Forks: 5
m-clark/models-by-example
By-hand code for models and algorithms. An update to the 'Miscellaneous-R-Code' repo.
Language: R - Size: 26.2 MB - Last synced at: 14 days ago - Pushed at: over 4 years ago - Stars: 69 - Forks: 19
gavincangan/bayesian-robotics
Fuse camera and LIDAR sensor data to track an object using an Extended Kalman Filter and performed SLAM
Language: Python - Size: 556 KB - Last synced at: 7 days ago - Pushed at: over 6 years ago - Stars: 19 - Forks: 5
ignacio82/vizdraws
vizdraws creates interactive visualizations using draws from a prior and posterior distributions.
Language: JavaScript - Size: 1.22 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 10
Pakillo/DHARMa.helpers
Helper functions to check Bayesian brms models with DHARMa
Language: R - Size: 1000 KB - Last synced at: 1 day ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0
