Wytamma/beastiary

Real time and remote MCMC trace monitoring with BEASTIARY.

Language: Vue - Size: 54.2 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 16 - Forks: 2

CompEvol/CBAN

releases of beast2 packaged zip files in a reliable location

Language: JavaScript - Size: 692 KB - Last synced: 6 days ago - Pushed: 10 days ago - Stars: 7 - Forks: 18

CompEvol/beast2-site

beast2 web development site

Language: HTML - Size: 25 MB - Last synced: 6 days ago - Pushed: 15 days ago - Stars: 2 - Forks: 6

LinguaPhylo/linguaPhylo

LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models

Language: Java - Size: 118 MB - Last synced: 18 days ago - Pushed: 24 days ago - Stars: 14 - Forks: 7

BEAST2-Dev/BEASTLabs

A package for BEAST 2 implementing generally useful stuff

Language: Java - Size: 18.1 MB - Last synced: about 2 months ago - Pushed: 9 months ago - Stars: 6 - Forks: 4

4ment/flc

Local clock model using relaxed and strict clocks

Language: Java - Size: 1.25 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 2

ropensci/beastier

R package to run BEAST2

Language: R - Size: 4.52 MB - Last synced: 5 days ago - Pushed: about 2 months ago - Stars: 9 - Forks: 2

ropensci/beautier

R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2

Language: R - Size: 11 MB - Last synced: 5 days ago - Pushed: about 2 months ago - Stars: 13 - Forks: 3

ropensci/babette

babette is an R package to work with BEAST2

Language: R - Size: 10.2 MB - Last synced: 5 days ago - Pushed: about 2 months ago - Stars: 41 - Forks: 6

CompEvol/morph-models

Models for dealing with morphological data

Language: Java - Size: 170 KB - Last synced: 6 days ago - Pushed: 5 months ago - Stars: 7 - Forks: 11

walterxie/startingtree

nice algorithm to initialize starting trees in BEAST2

Language: Java - Size: 85.9 KB - Last synced: 7 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

santiagosnchez/STRlength2repeat

Python code to convert STR length data to number of repetitions

Language: Python - Size: 19.5 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

walterxie/PackageViewer

Summarise BEAST 2 packages

Language: JavaScript - Size: 301 KB - Last synced: 10 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

walterxie/CitationManager

Analyse citations from locally installed BEAST 2 packages

Language: Java - Size: 9.77 KB - Last synced: 10 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

walterxie/beast2stats

Basic statistics of BEAST2 development

Language: HTML - Size: 2.52 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

BEAST2-Dev/bdsky

Birth Death Serial Skyline Model for BEAST2

Language: Java - Size: 25.8 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 12

BEAST2-Dev/phylodynamics

Bayesian phylodynamic methods in BEAST2

Language: Java - Size: 651 KB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 5 - Forks: 2

theLongLab/TransCOVID

A dedicated pipeline designed for the inference of COVID19 transmission networks in a population complete with the prediction of unsampled sources of infection using SARS-CoV-2 genomic sequences. Our pipeline is built upon the BEAST2 and TransPhylo software.

Language: R - Size: 5.81 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

laduplessis/Treponema_pallidum_in_early_modern_Europe

Data and scripts to reproduce the molecular clock dating analyses presented in "Ancient bacterial genomes reveal a formerly unknown diversity of Treponema pallidum strains in early modern Europe (Majander et al.)

Language: Python - Size: 48.1 MB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

andersgs/beast2_constsites 📦

Update your BEAST2 XML to account for constant sites

Language: Python - Size: 41 KB - Last synced: 20 days ago - Pushed: over 4 years ago - Stars: 6 - Forks: 1

Hanqing1989/Github_Bioinformatics_Learning

不定期更新在学习生物信息学过程中所用的编程语言、包和软件的教程和案例，欢迎有兴趣的伙伴一起交流学习。

Language: HTML - Size: 213 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

CompEvol/sampled-ancestors

This BEAST2 package provides MCMC proposals and post-processing tools for sampling trees containing sampled ancestors

Language: Java - Size: 4.46 MB - Last synced: 6 days ago - Pushed: about 1 year ago - Stars: 8 - Forks: 11

BEAST2-Dev/codonsubstmodels

Codon substitution models for DNA

Language: Java - Size: 8.4 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

richelbilderbeek/pirouette

R package that estimates the error BEAST2 makes from a given phylogeny

Language: R - Size: 8.75 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 2

BEAST2-Dev/beast-classic

Automatically exported from code.google.com/p/beast-classic

Language: Java - Size: 10.5 MB - Last synced: about 2 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 4

BEAST2-Dev/model-selection

Automatically exported from code.google.com/p/model-selection

Language: Java - Size: 370 KB - Last synced: about 2 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 3

Wytamma/pybeast

Language: Python - Size: 179 KB - Last synced: 5 days ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

Wytamma/dynamic-beast

Dynamic BEAST2 XML files

Language: Python - Size: 186 KB - Last synced: 13 days ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

4ment/bwest

Modules for BEAST 2

Language: Java - Size: 35.2 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

laduplessis/beast2_bdskysa_ebov_example

Example for BEAST v2.5 paper

Language: Python - Size: 41.8 MB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 2

4ment/flc-data

Language: Python - Size: 19.5 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

hisplan/docker-BEASTvntr

Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites

Language: Shell - Size: 4.88 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0