Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: microsatellites
EricArcher/strataG
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
Language: HTML - Size: 25.1 MB - Last synced: 11 days ago - Pushed: 12 days ago - Stars: 24 - Forks: 11
gcerchia/STRike
Ensembl VEP plugin that generates HGVS notation for Short Tandem Repeats (STR)
Language: Perl - Size: 11.7 KB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 0
jeanlain/STRyper
A macOS application for microsatellite genotyping using capillary sequencing data.
Language: Objective-C - Size: 25.8 MB - Last synced: 24 days ago - Pushed: 25 days ago - Stars: 1 - Forks: 0
BioJulia/PopGen.jl
Population Genetics in Julia
Language: Julia - Size: 76 MB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 43 - Forks: 15
RKMlab/perf
PERF is an Exhaustive Repeat Finder
Language: HTML - Size: 16 MB - Last synced: 6 days ago - Pushed: about 3 years ago - Stars: 33 - Forks: 11
Open-Source-Satellite/Mercury-GS
An Open Source Program that allows users to interact with a Spacecraft in a lab environment, pre-launch.
Language: Python - Size: 7.13 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 32 - Forks: 5
santiagosnchez/STRlength2repeat
Python code to convert STR length data to number of repetitions
Language: Python - Size: 19.5 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0
PengJia6/MSHunter 📦
Microsatellite genotyping
Language: Python - Size: 114 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0
RevantOrg/Revant
De novo repeat inference from long reads
Language: Java - Size: 3.15 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 0
LuisRodrigoArce-Valdes/Gulf_Corvina_Microsatellites 📦
This repository contains all input files and analyses for the article "No effects of fishery collapse on the genetic diversity of the Gulf of California Corvina, Cynoscion othonopterus (Perciformes: Sciaenidae)"
Language: R - Size: 219 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0
ShawHahnLab/chiimp
Computational, High-throughput Individual Identification through Microsatellite Profiling
Language: R - Size: 3.61 MB - Last synced: 7 months ago - Pushed: 10 months ago - Stars: 2 - Forks: 3
ShawHahnLab/chiimp-paper
Supporting code for the microsatellite genotyping paper introducing CHIIMP
Language: Makefile - Size: 132 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1
avvaruakshay/looper
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
Language: C++ - Size: 6.04 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0
hisplan/docker-lobSTR
Dockerized lobSTR: a short tandem repeat profiler for next generation sequencing data
Size: 1000 Bytes - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0
hisplan/docker-BEASTvntr
Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites
Language: Shell - Size: 4.88 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0