GitHub topics: microsatellites
EricArcher/strataG
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
Language: HTML - Size: 26.2 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 25 - Forks: 12
Open-Source-Satellite/Mercury-GS
An Open Source Program that allows users to interact with a Spacecraft in a lab environment, pre-launch.
Language: Python - Size: 7.13 MB - Last synced at: 10 days ago - Pushed at: almost 3 years ago - Stars: 53 - Forks: 11
BioJulia/PopGen.jl
Population Genetics in Julia
Language: Julia - Size: 76.1 MB - Last synced at: 6 days ago - Pushed at: 5 months ago - Stars: 51 - Forks: 16
jeanlain/STRyper
A macOS application for microsatellite genotyping using capillary sequencing data.
Language: Objective-C - Size: 23 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
RKMlab/perf
PERF is an Exhaustive Repeat Finder
Language: HTML - Size: 16 MB - Last synced at: 29 days ago - Pushed at: about 4 years ago - Stars: 32 - Forks: 11
Thebx1994/MISAPolymorphicSSRsExtractorService
Application for polymorphic SSRs loci identification in genomic sequences
Language: Java - Size: 21 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
gcerchia/STRike
Ensembl VEP plugin that generates HGVS notation for Short Tandem Repeats (STR)
Language: Perl - Size: 11.7 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
santiagosnchez/STRlength2repeat
Python code to convert STR length data to number of repetitions
Language: Python - Size: 19.5 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
PengJia6/MSHunter 📦
Microsatellite genotyping
Language: Python - Size: 114 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
RevantOrg/Revant
De novo repeat inference from long reads
Language: Java - Size: 3.15 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
LuisRodrigoArce-Valdes/Gulf_Corvina_Microsatellites 📦
This repository contains all input files and analyses for the article "No effects of fishery collapse on the genetic diversity of the Gulf of California Corvina, Cynoscion othonopterus (Perciformes: Sciaenidae)"
Language: R - Size: 219 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
ShawHahnLab/chiimp
Computational, High-throughput Individual Identification through Microsatellite Profiling
Language: R - Size: 3.61 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 3
ShawHahnLab/chiimp-paper
Supporting code for the microsatellite genotyping paper introducing CHIIMP
Language: Makefile - Size: 132 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1
avvaruakshay/looper
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
Language: C++ - Size: 6.04 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0
hisplan/docker-lobSTR
Dockerized lobSTR: a short tandem repeat profiler for next generation sequencing data
Size: 1000 Bytes - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
hisplan/docker-BEASTvntr
Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites
Language: Shell - Size: 4.88 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0