sgkit-dev/sgkit

Scalable genetics toolkit

Language: Python - Size: 113 MB - Last synced at: 6 days ago - Pushed at: 12 days ago - Stars: 253 - Forks: 34

aprilweilab/grgl

Genotype Representation Graph Library

Language: C++ - Size: 950 KB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 33 - Forks: 2

aprilweilab/mrpast

Demographic inference from Ancestral Recombination Graphs (ARGs)

Language: C++ - Size: 333 KB - Last synced at: 20 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 0

novikovalab/piawka

The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support

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HobanLab/USBG_Hybrid_Acorns Fork of botanic-ash/USBGHybridAcornsREU2023

Analyzing the offspring of 11 Quercus muehlenbergii individuals at the Morton Arboretum for hybridization and predictors of pollination success.

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pdimens/PopGenSims.jl

Create population genetics simulations

Language: Julia - Size: 624 KB - Last synced at: 10 days ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 1

BioJulia/PopGen.jl

Population Genetics in Julia

Language: Julia - Size: 76.1 MB - Last synced at: 1 day ago - Pushed at: 5 months ago - Stars: 51 - Forks: 16

bodkan/admixr

An R package for reproducible and automated ADMIXTOOLS analyses

Language: R - Size: 13.1 MB - Last synced at: 6 days ago - Pushed at: 2 months ago - Stars: 29 - Forks: 9

statgenlmu/coala

A Framework for Coalescent Simulation in R

Language: R - Size: 1.12 MB - Last synced at: 24 days ago - Pushed at: about 1 year ago - Stars: 23 - Forks: 4

hardingnj/xpclr

Code to compute the XP-CLR statistic to infer natural selection

Language: Python - Size: 127 KB - Last synced at: 5 months ago - Pushed at: almost 3 years ago - Stars: 90 - Forks: 27

r02ap19/DFE_Wright-Fisher01

An individual-based Wright-Fisher model with infinite site genomes and customizable distribution of fitness effects

Language: C++ - Size: 389 KB - Last synced at: 10 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

bodkan/slendr

Population genetic simulations in R 🌍

Language: R - Size: 50.8 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 52 - Forks: 5

GenomicsAotearoa/Kakapo

Scripts and code for Kākāpō genomic data

Language: Jupyter Notebook - Size: 43.5 MB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 14 - Forks: 1

jyanglab/g3tools

An R packages for Genomics, quantGen, and popGen studies, especially for crop species.

Language: R - Size: 465 KB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 4 - Forks: 1

bradduthie/Inbreeding

Population genetic model of polygynous biparental inbreeding with no polyandry

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santiagosnchez/genetic_drift

Shiny app with a genetic drift simulator

Language: R - Size: 2.93 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

esohkevin/CamPopStruct

Fine-scale genetic structure in South Western Cameroon

Language: R - Size: 141 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

bodkan/globe-slendr-2023-03-22

Simulation workshop for the Globe Institute, University of Copenhagen

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mmaalvarez/deep_ancestry 📦

Tool for inferring global ancestry proportions in admixed samples using deep learning

Language: Python - Size: 32.2 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

DL42/ParallelPopGen

This is a package of APIs for performing population genetics simulations and analyses in parallel on the GPU.

Language: Cuda - Size: 4.78 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 9 - Forks: 1

mnavascues/ABCRFtutorial

Crash Course on Approximate Bayesian Computation in Population Genetics

Language: R - Size: 205 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 3

Tom-Jenkins/utility_scripts

Scripts for population genetics analysis

Language: R - Size: 3.29 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 14 - Forks: 4

uranus238/RAD-MIG_tools

tools for RAD-seq, MIG-seq processing and analysis

Language: R - Size: 24.4 KB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

jyanglab/agro931-project

A demo project for class AGRO/ASCI-931: population genetics

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kmehan/PopGen-Web-GUI

Language: JavaScript - Size: 1.99 MB - Last synced at: almost 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

DL42/SFS_DFE_categorical

Calculates the maximum likelihood DFE for a SFS (selected) based on the categorical distribution and a reference SFS (neutral)

Language: Matlab - Size: 6.84 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0