tskit-dev/msprime

Simulate genealogical trees and genomic sequence data using population genetic models

Language: Python - Size: 14.9 MB - Last synced: about 1 hour ago - Pushed: about 2 hours ago - Stars: 167 - Forks: 84

MauroCE/PersonalWebsite

Personal Website with Blogposts, Achievements and Ideas

Language: HTML - Size: 28.1 MB - Last synced: about 3 hours ago - Pushed: about 4 hours ago - Stars: 0 - Forks: 0

varfish-org/mehari

VEP-like tool for sequence ontology and HGVS annotation of VCF files

Language: Rust - Size: 3.56 MB - Last synced: about 5 hours ago - Pushed: about 6 hours ago - Stars: 12 - Forks: 1

ammegandchips/EPoCH

Code necessary to conduct all data prep and analysis in the EPoCH study.

Language: HTML - Size: 169 MB - Last synced: 24 minutes ago - Pushed: about 5 hours ago - Stars: 2 - Forks: 2

GPhMorin/GenLib.jl

A pure Julia port of R's GENLIB genetics and genealogical library

Language: Julia - Size: 896 KB - Last synced: about 16 hours ago - Pushed: about 17 hours ago - Stars: 1 - Forks: 0

milescsmith/PLINKLiftOver

Perform liftover on plink files

Language: Python - Size: 239 KB - Last synced: about 17 hours ago - Pushed: about 23 hours ago - Stars: 4 - Forks: 1

neurogenomics/rare_disease_celltyping

Code, data and results associated with the "Rare diseases cell-typing" project.

Language: HTML - Size: 499 MB - Last synced: about 19 hours ago - Pushed: 25 days ago - Stars: 6 - Forks: 0

biopatternsg/biopatternsg

biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.

Size: 222 MB - Last synced: about 20 hours ago - Pushed: about 21 hours ago - Stars: 0 - Forks: 1

nvelden/geneviewer

An R package designed for drawing gene arrow maps

Language: R - Size: 9.4 MB - Last synced: about 17 hours ago - Pushed: about 22 hours ago - Stars: 12 - Forks: 0

jinghuazhao/R

R packages

Language: HTML - Size: 200 MB - Last synced: about 21 hours ago - Pushed: about 23 hours ago - Stars: 12 - Forks: 4

varfish-org/hgvs-rs

A port of biocommons/hgvs to the Rust programming language

Language: Rust - Size: 1.07 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 8 - Forks: 2

gorpipe/gor

GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.

Language: Java - Size: 13.1 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 38 - Forks: 13

varfish-org/annonars

Genome annotation based on Rust and RocksDB

Language: Rust - Size: 18.9 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 5 - Forks: 0

timflutre/PlantBreedGame

A serious game to teach plant selective breeding.

Language: R - Size: 606 KB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 8 - Forks: 2

arbre-app/read-gedcom-utils

Toolbox for read-gedcom. Work in progress.

Language: TypeScript - Size: 78.1 KB - Last synced: 3 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

varfish-org/annonars-data-clinvar

Clinvar data builds for annonars

Language: HCL - Size: 62.5 KB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 1 - Forks: 0

Griffan/VerifyBamID

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Language: mupad - Size: 69.2 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 87 - Forks: 15

datasnakes/OrthoEvolution

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

Language: Python - Size: 40.6 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 27 - Forks: 4

ArnovanHilten/GenNet

Framework for Interpretable Neural Networks

Language: Jupyter Notebook - Size: 17.1 MB - Last synced: 1 day ago - Pushed: about 1 month ago - Stars: 85 - Forks: 13

lgmgeo/AnnotSV

Annotation and Ranking of Structural Variation

Language: Tcl - Size: 85.2 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 192 - Forks: 36

neurogenomics/MSTExplorer

Multi-Scale Target Explorer systematically identifies, prioritises, and visualises cell-type-specific gene therapy targets across the phenome.

Language: R - Size: 5.6 MB - Last synced: about 19 hours ago - Pushed: 4 days ago - Stars: 1 - Forks: 1

Biometris/statgenGxE

See https://biometris.github.io/statgenGxE for a full description

Language: R - Size: 39.3 MB - Last synced: 2 days ago - Pushed: 4 days ago - Stars: 9 - Forks: 6

Biometris/statgenSTA

See https://biometris.github.io/statgenSTA for a full description

Language: R - Size: 25.6 MB - Last synced: 2 days ago - Pushed: 4 days ago - Stars: 4 - Forks: 5

Aavache/awesome-genetic-ai-papers

Recent awesome AI papers about genomics.

Size: 9.77 KB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 0 - Forks: 0

VittorioAccomazzi/LeafSize

🍃 Leaf and Pathogen quantification

Language: TypeScript - Size: 48.1 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 0 - Forks: 0

ecarnovsky/fishsim

A virtual aquarium website 🐟

Language: JavaScript - Size: 605 KB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 0 - Forks: 0

mayukhmondal/ABC-DLS

Approximate Bayesian Computation using Deep Learning (TensorFlow Keras backended) and Sequential Monte Carlo (aka Particle Filter)

Language: Python - Size: 118 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 4 - Forks: 0

FlyBase/flybase-controlled-vocabulary

The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)

Language: Shell - Size: 31.1 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 9 - Forks: 5

slowkow/hlabud

🐶 hlabud: HLA genotype analysis in R

Language: TeX - Size: 25 MB - Last synced: 1 day ago - Pushed: 8 days ago - Stars: 14 - Forks: 0

molpopgen/fwdpy11

Forward-time simulation in Python using fwdpp

Language: C++ - Size: 26.5 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 27 - Forks: 6

C-gonz/Phylogenetic_Focusing

PhyFocus is a conceptual approach to gene family phylogenetics that emphasizes extensive sequence input to generate broad phylogenies for subsequent refining. Phyfocus was conceptualized by David C. Plachetzki, with pre-release coding by Curtis Provencher.

Language: Shell - Size: 11.1 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 1 - Forks: 0

erisemberg/peanut-allergy

This repository contains data and code to reproduce analysis in the manuscript, "A mutation in Themis contributes to peanut-induced oral anaphylaxis in CC027 mice"

Language: R - Size: 74.6 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 0 - Forks: 0

AstraBert/AmpliPiper-docs Fork of just-the-docs/just-the-docs

Docs for AmpliPiper, developed by @nhmvienna

Language: SCSS - Size: 8.36 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 1 - Forks: 0

SamuelNicaise/variantconvert

A customizable genetic variants file format converter.

Language: Python - Size: 6.55 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 9 - Forks: 2

leabact/ddRADseq-for-prokaryota

This project was written as a first step to apply the ddRADSeq genotyping method to prokaryota. This code is made to dertemine, in silico, the couple of enzymes to apply on a given sequence.

Language: Python - Size: 2.49 MB - Last synced: 7 days ago - Pushed: 23 days ago - Stars: 0 - Forks: 0

ytakemon/JAC_DO_Kidney

Language: Shell - Size: 990 KB - Last synced: 9 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

lcrawlab/multio-viz

A platform for the interactive assessment of gene regulatory networks

Language: R - Size: 46.8 MB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 2 - Forks: 0

Gagniuc/Simple-JS-implementation-of-Objective-Digital-Stains

Simple JS implementation of Objective Digital Stain (ODS) produces ODS images from DNA sequences. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

Language: HTML - Size: 125 KB - Last synced: 9 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/Presentations

This section contains all the original presentations from the supplementary materials related to the book entitled: Algorithms in Bioinformatics: Theory and Implementation. The presentations contain original content related to biology, bioinformatics, genetics, genomics, physics, as well as algorithms or software programming implementations.

Size: 93.3 MB - Last synced: 9 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/Objective-Digital-Stains

This is an application that shows the informational structure of DNA sequences. The objective digital stain (ODS) is represented by a distribution of points on a two-dimensional image, which reflects the information structure inside a DNA/RNA sequence.

Language: HTML - Size: 111 KB - Last synced: 9 days ago - Pushed: about 2 years ago - Stars: 3 - Forks: 2

Gagniuc/Genomin

Genomin is an implementation for large-scale genomic analysis. It is made in Visual Basic 6.0 (VB6). It uses the seek method to generate buffers from large FASTA files (over 8 Gb).

Language: Visual Basic 6.0 - Size: 4.17 MB - Last synced: 9 days ago - Pushed: over 1 year ago - Stars: 3 - Forks: 3

thierrygosselin/radiator

RADseq Data Exploration, Manipulation and Visualization using R

Language: HTML - Size: 9.68 MB - Last synced: 4 days ago - Pushed: 9 days ago - Stars: 57 - Forks: 22

open-genes/open-genes-frontend

Open Genes is a database of human genes associated with aging and lifespan.

Language: TypeScript - Size: 18.2 MB - Last synced: 9 days ago - Pushed: about 2 months ago - Stars: 8 - Forks: 10

theislab/cellrank

CellRank: dynamics from multi-view single-cell data

Language: Python - Size: 84.9 MB - Last synced: 2 days ago - Pushed: 17 days ago - Stars: 305 - Forks: 38

zjwinn/Profiling-of-FHB-Resistance-QTL-Haplotypes-Through-MM-GBG-and-ML

This is the data repository for the publication of the same name.

Size: 22.9 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 0 - Forks: 0

zjwinn/HaploCatcher

An R package for inferring Haplotypes from high-density, non-targeted genotyping platforms

Language: R - Size: 1.26 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 0 - Forks: 0

jElhamm/N-Queens-Puzzle

"The classic 'N-Queens problem' is tackled using a variety of advanced techniques such as nested loops, heuristics, backtracking, genetic algorithms, and local search algorithms."

Language: C++ - Size: 13.6 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 0 - Forks: 0

rwk-unil/sapphire

Smart and Accurate Polishing of Phase Haplotypes Integrating Read Enhancements (SAPPHIRE)

Language: C++ - Size: 7.17 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 8 - Forks: 1

filippob/bioinformatics_and_biostatistics_training

Language: HTML - Size: 1.75 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 0 - Forks: 0

SchriderLab/Timesweeper

Python package for detecting positive selective sweeps using time-series genomics sampling data.

Language: Python - Size: 5.17 MB - Last synced: about 12 hours ago - Pushed: about 1 month ago - Stars: 16 - Forks: 2

Zsailer/notebooks-nonlinear-high-order-epistasis Fork of harmslab/notebooks-nonlinear-high-order-epistasis

All materials and analysis as Jupyter notebooks for Genetics paper.

Language: Jupyter Notebook - Size: 3.47 MB - Last synced: 11 days ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

varfish-org/varfish-docker-compose-ng

(Next-generation; in-development) VarFish Docker Compose

Language: Shell - Size: 93.8 KB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 0 - Forks: 0

tatonetti-lab/indirect-gwas

Fast GWAS on linear combinations of traits using only summary statistics

Language: Rust - Size: 109 KB - Last synced: 11 days ago - Pushed: 12 days ago - Stars: 5 - Forks: 1

varfish-org/varfish-server

VarFish: comprehensive DNA variant analysis for diagnostics and research

Language: Python - Size: 54.7 MB - Last synced: 16 days ago - Pushed: 18 days ago - Stars: 40 - Forks: 11

MichaelSebero/GEDmatch-Admixture-Sorter

This python script sorts a population spreadsheet provided by GEDmatch.

Language: Python - Size: 24.4 KB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 0 - Forks: 0

labsquare/cutevariant

A standalone and free application to explore genetics variations from VCF file

Language: Python - Size: 69.2 MB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 89 - Forks: 20

zietzm/igwas 📦

Fast GWAS on linear combinations of traits using only summary statistics - Rust re-implementation

Language: Rust - Size: 50.8 KB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 1 - Forks: 0

trekhleb/self-parking-car-evolution

🧬 Training the car to do self-parking using a genetic algorithm

Language: TypeScript - Size: 31.8 MB - Last synced: 9 days ago - Pushed: over 1 year ago - Stars: 709 - Forks: 78

Gagniuc/Visual-Sequence-Alignment-in-VB6

This highly visual and responsive VB6 application is an implementation of the global sequence alignment algorithm. It allows the modification of the alignment parameters (match, mismatch, gap), and it shows the pairwise alignment as well as the score matrix in real time.

Language: Visual Basic 6.0 - Size: 7.26 MB - Last synced: 9 days ago - Pushed: over 1 year ago - Stars: 8 - Forks: 2

nasa/GeneLab_Data_Processing

Language: Jupyter Notebook - Size: 227 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 54 - Forks: 40

KalinNonchev/gnomAD_DB

This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.

Language: Python - Size: 17.7 MB - Last synced: 9 days ago - Pushed: 13 days ago - Stars: 27 - Forks: 10

GreallyLab/gaiaAssociation

gaiaAssociation is a tool to detect the cell specific enrichment of loci in regulatory regions through the sum of non-identical binomials

Language: Python - Size: 310 KB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 3 - Forks: 1

germinateplatform/germinate-vue

Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.

Language: Vue - Size: 7.62 MB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 12 - Forks: 4

bbowles1/ORF-Annotation

A pipeline to identify deleterious genetic variation in human 5'UTR regions.

Language: Python - Size: 1.48 MB - Last synced: 14 days ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

tatonetti-lab/indirect-gwas-analysis

Accerating pan-biobank GWAS using phenotype projections

Language: Jupyter Notebook - Size: 5 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 1 - Forks: 0

CERC-Genomic-Medicine/WEGS_pipelines

Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.

Language: Nextflow - Size: 4.05 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 1 - Forks: 0

neurogenomics/EpiCompare

Comparison, benchmarking & QC of epigenetic datasets

Language: HTML - Size: 29.7 MB - Last synced: 1 day ago - Pushed: 15 days ago - Stars: 12 - Forks: 3

sebc31/P-GRe

P-GRe is a software allowing the prediction of the positions of pseudogenes and their structures on a genome scale.

Language: Python - Size: 952 KB - Last synced: 14 days ago - Pushed: 15 days ago - Stars: 2 - Forks: 0

mancusolab/sushie

Software to perform multi-ancestry SNP fine-mapping on molecular data

Language: Python - Size: 922 KB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 13 - Forks: 2

mutalyzer/algebra

A Boolean Algebra for Genetic Variants

Language: Python - Size: 854 KB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 10 - Forks: 2

ipb-halle/MolecularFaces

Java Server Faces UI components for chemistry and biochemistry

Language: Java - Size: 241 KB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 2 - Forks: 2

broadinstitute/pyro-cov

Pyro models of SARS-CoV-2 variants

Language: Jupyter Notebook - Size: 417 MB - Last synced: 9 days ago - Pushed: 15 days ago - Stars: 73 - Forks: 27

slowkow/allelefrequencies

📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.

Language: Python - Size: 24.8 MB - Last synced: 1 day ago - Pushed: 18 days ago - Stars: 17 - Forks: 2

stephenturner/kgp

1000 Genomes Project Metadata R Package

Language: R - Size: 1000 KB - Last synced: 11 days ago - Pushed: over 1 year ago - Stars: 18 - Forks: 3

GenoML/genoml2

GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data

Language: Python - Size: 27.8 MB - Last synced: 4 days ago - Pushed: 19 days ago - Stars: 20 - Forks: 16

dogsheep/genome-to-sqlite

Import your genome into a SQLite database

Language: Python - Size: 8.79 KB - Last synced: 9 days ago - Pushed: over 4 years ago - Stars: 20 - Forks: 1

telaoumatenyanis/GenAlgo.js

Genetic and evolutionary algorithms in Javascript.

Language: JavaScript - Size: 1.99 MB - Last synced: 4 days ago - Pushed: over 1 year ago - Stars: 18 - Forks: 0

QuantGen/BGData

A Suite of Packages for Analysis of Big Genomic Data

Language: R - Size: 4.9 MB - Last synced: 15 days ago - Pushed: 8 months ago - Stars: 33 - Forks: 14

pgxcentre/genipe

Genome-wide imputation pipeline

Language: Python - Size: 39.8 MB - Last synced: 3 days ago - Pushed: 9 months ago - Stars: 30 - Forks: 7

twoXes/awesome-structural-bioinformatics

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

Language: Python - Size: 31.1 MB - Last synced: about 19 hours ago - Pushed: about 1 year ago - Stars: 56 - Forks: 9

HKyleZhang/RecView

view and locate recombinations positions using pedigree data

Language: R - Size: 990 KB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 3 - Forks: 0

Gr1nx-bitbit/epigentics-sim

A venture to replicate and manipulate the process of retroviruses and how they affect our body

Language: C++ - Size: 259 KB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 0 - Forks: 0

neurogenomics/HPOExplorer

Functions for working with the Human Phenotype Ontology data

Language: R - Size: 10.9 MB - Last synced: about 19 hours ago - Pushed: 21 days ago - Stars: 2 - Forks: 1

sbs-book/sbs-book.github.io

Webpage of the book Shaken Baby Syndrome: Investigating the Abusive Head Trauma Controversy, Findley et al., Cambridge University Press, 2023.

Language: HTML - Size: 9.26 MB - Last synced: 22 days ago - Pushed: 12 months ago - Stars: 0 - Forks: 0

reiver/evolution-and-behavior-reading-list

A list of what was read and discussed, over the years, for the Evolution And Behavior reading group.

Size: 18.6 KB - Last synced: 23 days ago - Pushed: about 3 years ago - Stars: 5 - Forks: 2

kmein/fasta Fork of mitchellwrosen/fasta

Implementation of the FASTA algorithm from bioinformatics

Language: Haskell - Size: 6.84 KB - Last synced: 23 days ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

BaseMax/N-QueenGenetic

Solving N-Queen problem using Genetic Algorithm.

Language: C++ - Size: 562 KB - Last synced: 24 days ago - Pushed: almost 4 years ago - Stars: 3 - Forks: 0

mentatpsi/RandomizedCancerGenomics

An implementation of Machine Learning and Data Science on a Breast Cancer study from Memorial Sloan Kettering Cancer Center from 2018. All data was made available on cBioPortal.

Language: Jupyter Notebook - Size: 3.69 MB - Last synced: 24 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

mentatpsi/KEGG-Crawler

A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.

Language: Python - Size: 25.2 MB - Last synced: 24 days ago - Pushed: 10 months ago - Stars: 20 - Forks: 4

rootstrap/ImputationGeneris Fork of asiadmitchell/ImputationGeneris 📦

DNA Imputation tool for Generis.

Language: R - Size: 5.56 MB - Last synced: 24 days ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 1

smallnest/gofu

functional go with generic types

Size: 11.7 KB - Last synced: 24 days ago - Pushed: almost 4 years ago - Stars: 10 - Forks: 0

pstawinski/pygenebe

PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its API, while supporting pandas, VCF file formats, and HGVS parsing

Language: Python - Size: 2.77 MB - Last synced: 15 days ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

cmap/cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

Language: Python - Size: 19.9 MB - Last synced: 15 days ago - Pushed: almost 2 years ago - Stars: 117 - Forks: 76

goktug7913/life

Ecosystem simulation in Unity Engine

Language: ShaderLab - Size: 5.88 MB - Last synced: 25 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

molgenis/vip

Variant Interpretation Pipeline

Language: Shell - Size: 417 MB - Last synced: 27 days ago - Pushed: 28 days ago - Stars: 19 - Forks: 4

varfish-org/varfish-cli

VarFish REST API client (CLI + Python package)

Language: Python - Size: 356 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 3

nklimko/dgrp-starve

Analysis of Starvation Resistance in Drosophila melanogaster

Language: R - Size: 81 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 1 - Forks: 0

iPsychonaut/FunDiSPipe

FunDiSPipe is a comprehensive bioinformatics pipeline designed for the Fungal Diversity Survey (FunDiS), specifically tailored for analyzing fungal ITS data from Oxford Nanopore Technologies sequencing.

Language: Python - Size: 287 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

opentargets/gentropy

Open Targets python framework for post-GWAS analysis

Language: Jupyter Notebook - Size: 18.8 MB - Last synced: 29 days ago - Pushed: 29 days ago - Stars: 20 - Forks: 4

Jaffar-Hussein/PhyloExplora

The project focuses on studying three extinct feline species from the American continent, analyzing ancient DNA sequences to uncover their evolutionary relationships with contemporary feline species. Implemented in C, the project involves parsing FASTA files, pairwise sequence alignment, and constructing phylogenetic trees using various algorithms.

Language: C - Size: 4.84 MB - Last synced: 27 days ago - Pushed: 4 months ago - Stars: 0 - Forks: 1