An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: proteomics

ferigreski/avg-tools

Avg-tools offers malware protection and tools for learning and testing. 🐙 It covers email shield, web shield, tuneups, and remote access for experimentation.

Size: 12.7 KB - Last synced at: about 5 hours ago - Pushed at: about 7 hours ago - Stars: 0 - Forks: 0

Allarione/MSAnnika-docs

🌐 Build and browse the MS Annika webpage using Nextra for streamlined documentation and easy access to project resources.

Size: 89.8 KB - Last synced at: about 8 hours ago - Pushed at: about 10 hours ago - Stars: 0 - Forks: 0

lgatto/lgatto.github.io

My github page

Language: SCSS - Size: 195 MB - Last synced at: about 10 hours ago - Pushed at: about 12 hours ago - Stars: 11 - Forks: 16

edyp-lab/Prostar2

Language: HTML - Size: 44 MB - Last synced at: about 11 hours ago - Pushed at: about 13 hours ago - Stars: 0 - Forks: 0

cran-task-views/Omics

CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Size: 81.1 KB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 21 - Forks: 5

OpenMS/OpenMS

The codebase of the OpenMS project

Language: C++ - Size: 765 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 524 - Forks: 360

PixelgenTechnologies/pixelator

A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays.

Language: Python - Size: 79.3 MB - Last synced at: about 22 hours ago - Pushed at: 1 day ago - Stars: 15 - Forks: 2

SamueldelaCamaraFuentes/TraianProt

Pipeline and Shiny app for the dowstream analysis of quantitative proteomic data

Language: R - Size: 6.87 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 2 - Forks: 0

theGreatHerrLebert/rustims

A Framework for IMS-MS Raw Data Processing written in Rust and Python.

Language: Rust - Size: 80.6 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 13 - Forks: 2

Metaboverse/Metaboverse

Visualization and analysis platform for metabolic data and network pattern recognition

Language: JavaScript - Size: 543 MB - Last synced at: 2 days ago - Pushed at: 6 months ago - Stars: 39 - Forks: 7

galaxyproject/training-material

A collection of Galaxy-related training material

Language: HTML - Size: 29.4 GB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 339 - Forks: 1,000

rusteomics/mzcore

A Rust library for peptide centric mass spec calculations centered around ProForma and complex theoretical fragmentation

Language: Rust - Size: 161 MB - Last synced at: 1 day ago - Pushed at: 3 days ago - Stars: 34 - Forks: 8

MannLabs/alphapeptstats

Python Package for the downstream analysis of mass-spectrometry-based proteomics data

Language: Jupyter Notebook - Size: 118 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 73 - Forks: 16

rformassspectrometry/Spectra

Low level infrastructure to handle MS spectra

Language: R - Size: 24.3 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 41 - Forks: 28

nf-core/proteinfamilies

Generation and update of protein families

Language: Nextflow - Size: 2.95 MB - Last synced at: 1 day ago - Pushed at: 10 days ago - Stars: 19 - Forks: 3

snijderlab/annotator

A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.

Language: Rust - Size: 6.36 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 28 - Forks: 2

bigbio/sdrf-pipelines

`sdrf-pipelines` is the official SDRF file validator and converts SDRF to pipeline configuration files

Language: Python - Size: 91.6 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 20 - Forks: 25

LewisResearchGroup/ProteomicsQC

Quality Control Pipeline Server for Large-Cohort Quantitative Proteomics (TMT)

Language: Python - Size: 20.5 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 3 - Forks: 2

RDA-MOMSI/Dashboard

MOMSI Standard Landscape Review Curation Workflow & Multi-Omics Dashboard

Language: JavaScript - Size: 5.65 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 2 - Forks: 0

andrewdalpino/ESMC-Function-Classifier

An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO).

Language: Python - Size: 89.8 KB - Last synced at: 1 day ago - Pushed at: 7 days ago - Stars: 2 - Forks: 0

animesh/diffExpr Fork of timoschd/geocoding_shiny

R Shiny app for differential-expression analysis using T-test. The app is automatically deployed via GH Actions to shinyapp.io available as https://fuzzylife.shinyapps.io/diffExpr/

Language: R - Size: 11.9 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

vaishnavpvarma/vaxijen-antigenicity-parser

Automated parser for VaxiJen output 🚀 A lightweight Perl tool to extract and tabulate antigenicity predictions from VaxiJen . Designed for bioinformatics, immunoinformatics, and reverse vaccinology workflows, this script helps researchers process large datasets into clean, ready-to-analyze tables.

Language: Perl - Size: 47.9 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

martatru/BioBloom

Contains scripts used for BioBloom research project, focused on exploring mixroalgae as a source of ACE-I-inhibitory bioactive peptides.

Language: Python - Size: 2.98 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 1 - Forks: 0

SomaLogic/SomaDataIO

The SomaDataIO package loads and exports 'SomaScan' data via the 'SomaLogic Operating Co., Inc.' proprietary data file, called an ADAT ('*.adat'). The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.

Language: R - Size: 27.5 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 26 - Forks: 18

seerbio/seer-pas-sdk

Python SDK for Seer PAS

Language: Python - Size: 21.8 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 2 - Forks: 1

abelew/hpgltools Fork of elsayed-lab/hpgltools

A collection of R functions to aid in host-pathogen genomic research

Language: R - Size: 529 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 5 - Forks: 1

WEHI-SODA-Hub/spatialproteomics

Cell segmentation and downstream analysis pipeline for spatial proteomics (MIBI & COMET).

Language: Nextflow - Size: 6.76 MB - Last synced at: 1 day ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0

Nesvilab/PepCentric

Search proteins and peptides against repository-scale MS/MS spectra within seconds

Size: 6.84 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 0

ProteomicsML/ProteomicsML

Community-curated tutorials and datasets for ML in proteomics

Language: Jupyter Notebook - Size: 196 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 55 - Forks: 8

microbiomedata/nmdc-schema

National Microbiome Data Collaborative (NMDC) unified data model

Language: Python - Size: 156 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 44 - Forks: 9

MaayanLab/Playbook-Workflow-Builder

A repository for the Playbook Workflow Builder project.

Language: TypeScript - Size: 20.8 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 22 - Forks: 19

pachterlab/gget

🧬 gget enables efficient querying of genomic reference databases

Language: Python - Size: 330 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 1,049 - Forks: 77

sheltzer-lab/DosageCompensationFactors

This project contains the code for the manuscript "Explainable Machine Learning Identifies Factors for Dosage Compensation in Aneuploid Human Cancer Cells" by Heller et al. (https://doi.org/10.1101/2025.05.12.653427).

Language: R - Size: 1.27 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 1 - Forks: 0

CompOmics/DeepLC

DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

Language: Python - Size: 839 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 70 - Forks: 24

MannLabs/alphabase

Infrastructure of AlphaX ecosystem

Language: Python - Size: 45.5 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 41 - Forks: 11

Nesvilab/FragPipe

A cross-platform proteomics data analysis suite

Language: Java - Size: 4.14 GB - Last synced at: 5 days ago - Pushed at: 11 days ago - Stars: 248 - Forks: 42

lgatto/MSnbase

Base Classes and Functions for Mass Spectrometry and Proteomics

Language: R - Size: 112 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 134 - Forks: 47

UCLouvain-CBIO/scp

Single cell proteomics data processing

Language: R - Size: 70.1 MB - Last synced at: 2 days ago - Pushed at: 2 months ago - Stars: 29 - Forks: 3

lightdock/lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Language: Python - Size: 93.4 MB - Last synced at: 2 days ago - Pushed at: 2 months ago - Stars: 353 - Forks: 47

MannLabs/alphadia

modular & open DIA search

Language: Jupyter Notebook - Size: 160 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 74 - Forks: 5

Melclic/intersectomics

Package to study time series (or other series) multi-omics patterns of expresssion with replicates

Language: Python - Size: 1.52 MB - Last synced at: 12 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0

bigbio/quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

Language: Nextflow - Size: 25 MB - Last synced at: 1 day ago - Pushed at: 13 days ago - Stars: 56 - Forks: 45

Freddsle/FedProt

FedProt is a federated privacy-preserving version of state-of-the-art differential protein abundance analysis method DEqMS

Language: Jupyter Notebook - Size: 365 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 1 - Forks: 0

MateuszFido/LCMSpector

📊 User-friendly mass spectrometry and chromatography data analysis app for non-specialists with UI, graphing, quantification, MS/MS and data export capabilities

Language: Python - Size: 36.5 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 3 - Forks: 0

MannLabs/directlfq

Fast and accurate label-free quantification for small and very large numbers of proteomes

Language: Jupyter Notebook - Size: 176 MB - Last synced at: 6 days ago - Pushed at: 15 days ago - Stars: 59 - Forks: 7

pgarrett-scripps/peptacular

A spectacularly simple package for working with peptide sequences.

Language: Python - Size: 11.9 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 12 - Forks: 0

CBBIO/protein-information-system

Functional sequence annotation, metamorphism and multifunctionality research over proteins

Language: Python - Size: 37.5 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 5 - Forks: 1

MannLabs/alphaquant

An open-source Python package for accurate and sensitive peptide and protein quantification.

Language: Python - Size: 595 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 18 - Forks: 1

DatViseR/Vivid-Volcano

A shiny app for custom analyzes of preprocessed omics data

Language: HTML - Size: 31 MB - Last synced at: 1 day ago - Pushed at: 16 days ago - Stars: 3 - Forks: 1

wheretrue/exon

Exon is an OLAP query engine specifically for biology and life science applications.

Language: Rust - Size: 59.3 MB - Last synced at: 7 days ago - Pushed at: 5 months ago - Stars: 70 - Forks: 7

fullscreen-triangle/lavoisier

High performance computing solution for mass-spectrometry based metabolomics data analysis pipeline that combines traditional numerical methods with advanced computer vision methods for high volume data using AI-driven metacognitive orchestration layers

Language: HTML - Size: 101 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 1 - Forks: 0

Vitek-Lab/MSstatsPTM

Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments

Language: R - Size: 21.8 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 10 - Forks: 2

PyProphet/pyprophet

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.

Language: Python - Size: 57.5 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 29 - Forks: 21

hgb-bin-proteomics/pyXLMS

A python package to process protein cross-linking data.

Language: Python - Size: 252 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 0

Integrative-Transcriptomics/PTMVision

Web application for the interactive visualization and exploration of post-translational modifications of proteins from open and closed search software.

Language: HTML - Size: 242 MB - Last synced at: 1 day ago - Pushed at: 20 days ago - Stars: 4 - Forks: 1

BAMeScience/Mistle

Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to large spectral libraries at a high performance.

Language: C++ - Size: 146 MB - Last synced at: 15 days ago - Pushed at: almost 2 years ago - Stars: 15 - Forks: 2

lgatto/RforProteomics

Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

Language: TeX - Size: 265 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 95 - Forks: 36

PNNL-Comp-Mass-Spec/proteomics-data-analysis-tutorial

A comprehensive tutorial for proteomics data analysis in R that utilizes packages developed by researchers at PNNL and from Bioconductor.

Language: TeX - Size: 40 MB - Last synced at: 2 days ago - Pushed at: over 3 years ago - Stars: 10 - Forks: 5

SysBioChalmers/GECKO

Toolbox for including enzyme constraints on a genome-scale model.

Language: MATLAB - Size: 107 MB - Last synced at: 6 days ago - Pushed at: 4 months ago - Stars: 77 - Forks: 52

CompOmics/ms2pip

MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

Language: HTML - Size: 105 MB - Last synced at: 2 days ago - Pushed at: 6 months ago - Stars: 45 - Forks: 19

Olink-Proteomics/OlinkRPackage

Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.

Language: R - Size: 731 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 115 - Forks: 28

bigbio/proteomics-sample-metadata

The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets

Size: 96.1 MB - Last synced at: 2 days ago - Pushed at: 20 days ago - Stars: 95 - Forks: 111

lgatto/TeachingMaterial

Various teaching material

Language: HTML - Size: 351 MB - Last synced at: 6 days ago - Pushed at: 5 months ago - Stars: 184 - Forks: 80

CompOmics/ms2rescore

Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

Language: Python - Size: 306 MB - Last synced at: 20 days ago - Pushed at: 3 months ago - Stars: 60 - Forks: 19

endixk/ezaai

EzAAI - High Throughput Prokaryotic AAI Calculator

Language: Java - Size: 97 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 44 - Forks: 5

MannLabs/alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.

Language: HTML - Size: 204 MB - Last synced at: 2 days ago - Pushed at: over 1 year ago - Stars: 178 - Forks: 33

MannLabs/alphapeptdeep

Deep learning framework for proteomics

Language: Jupyter Notebook - Size: 30.7 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 131 - Forks: 22

wfondrie/depthcharge

A deep learning toolkit for mass spectrometry

Language: Python - Size: 1.29 MB - Last synced at: 17 days ago - Pushed at: about 1 year ago - Stars: 82 - Forks: 20

cbielow/PTXQC

A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant

Language: HTML - Size: 16.7 MB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 46 - Forks: 26

wilhelm-lab/koina

Democratizing ML in proteomics

Language: Jupyter Notebook - Size: 26.3 MB - Last synced at: 18 days ago - Pushed at: 19 days ago - Stars: 42 - Forks: 21

hgb-bin-proteomics/pyXLMS-app

Link to the web application for pyXLMS.

Size: 6.84 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0

Noble-Lab/Carafe

High quality in silico spectral library generation for data-independent acquisition proteomics

Language: Java - Size: 490 KB - Last synced at: 18 days ago - Pushed at: 22 days ago - Stars: 16 - Forks: 2

mykmal/cowas

Association testing for genetically regulated co-expression.

Language: R - Size: 221 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 5 - Forks: 0

bigbio/ibaqpy

Absolute quantification package based on quantms.io

Language: HTML - Size: 227 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 15 - Forks: 13

mriffle/nf-ms-dda-casanovo

A Nextflow workflow for de novo DDA MS/MS searching using Casanovo

Language: Nextflow - Size: 70.3 KB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 0 - Forks: 0

guillecarrillo/proteoparc

A bioinformatic tool to generate reference databases for ancient protein data analysis

Language: Python - Size: 3.4 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 2 - Forks: 0

jankod/DigestedProteinDB

Peptide database digested with enzime optimized for search by mass.

Language: Java - Size: 10.7 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 1 - Forks: 0

manbaritone/SynProtX

SynProtX is a deep learning model leveraging large-scale proteomics, molecular graphs, and fingerprints to enhance the prediction of synergistic effects in anti-cancer drug combinations.

Language: Jupyter Notebook - Size: 3.85 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 1 - Forks: 0

jvanheld/intro-bioinfo-L2-SV-AMU-SSV3U15_public

Cours d'introduciton à la bioinformatique, 2ème licence en Sciences de la vie, Aix-Marseille Université (L2 SV AMU)

Language: HTML - Size: 147 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 1

infinity-a11y/KiwiFlow

Data analysis workflow for proteomics mass spectrometry featuring bayesian deconvolution and various downstream analyses.

Language: R - Size: 11.4 MB - Last synced at: 19 days ago - Pushed at: 20 days ago - Stars: 1 - Forks: 0

npinter/ProteoGenDB

ProteoGenDB: A Fast Proteogenomic Pipeline for Identifying Sequence Variants in Proteomics Data

Language: Python - Size: 639 KB - Last synced at: 2 days ago - Pushed at: 27 days ago - Stars: 1 - Forks: 0

czbiohub-sf/protdata

Dataloader for common proteomics search engine outputs into AnnData format

Language: Python - Size: 818 KB - Last synced at: 19 days ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 0

CompOmics/compomics-utilities

Open source Java library for computational proteomics

Language: Java - Size: 110 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 33 - Forks: 17

hgb-bin-proteomics/MSAnnika_Spectral_Library_exporter

Generate a spectral library for Spectronaut from MS Annika results.

Language: Python - Size: 7.78 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 1

HUPO-PSI/mzSpecLib

mzSpecLib: A standard format to exchange/distribute spectral libraries

Language: Python - Size: 46.6 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 27 - Forks: 14

mikelkou/fava

Functional Associations using Variational Autoencoders

Language: Jupyter Notebook - Size: 176 MB - Last synced at: 18 days ago - Pushed at: 26 days ago - Stars: 40 - Forks: 3

theGreatHerrLebert/ionmob

An open-source prediction framework for peptide ion collision cross section (CCS) values with python.

Language: Python - Size: 210 MB - Last synced at: 2 days ago - Pushed at: almost 2 years ago - Stars: 15 - Forks: 3

CompOmics/psm_utils

Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

Language: Python - Size: 104 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 29 - Forks: 10

MannLabs/alphamap

An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

Language: Jupyter Notebook - Size: 285 MB - Last synced at: 22 days ago - Pushed at: 6 months ago - Stars: 84 - Forks: 21

RTKlab-BYU/MSConnect

MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.

Language: Python - Size: 6.61 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 12 - Forks: 7

wilhelm-lab/dlomix

Python framework for Deep Learning in Proteomics

Language: Jupyter Notebook - Size: 372 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 28 - Forks: 11

Rappsilber-Laboratory/xiRT

Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides

Language: Python - Size: 96.1 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 2

TNTurnerLab/3D-CLUMP

Software to test for clustering of missense variants in 3D protein structures.

Language: Python - Size: 42.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

tnaake/MsQuality

Language: R - Size: 19.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 7 - Forks: 0

5h4ng/OptiMHC

An optimum rescoring pipeline for immunopeptidomics data

Language: Python - Size: 33.9 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 1

SlavovLab/decode

Computational pipeline for quantifying amino acid substitutions from alternate RNA decoding

Language: Jupyter Notebook - Size: 12.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

mansanlab/alphafoldfetch

A tool for downloading AlphaFold structures using UniProt IDs or FASTA files

Language: Python - Size: 1.94 MB - Last synced at: 16 days ago - Pushed at: 3 months ago - Stars: 3 - Forks: 1

sauerkrausi/HeLanMOST

Language: ImageJ Macro - Size: 19.5 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

hassanakthv/SIPMS

Species Identification and Prediction by Mass Spectrometry

Language: R - Size: 6.42 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 1

JonCasC/mass_decomposer

A simple GUI version of PyOpenMSs Mass Decomposition (https://pyopenms.readthedocs.io/en/latest/user_guide/mass_decomposition.html)

Language: Python - Size: 2.93 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

Related Keywords
proteomics 676 mass-spectrometry 228 bioinformatics 173 r 64 proteomics-data-analysis 48 metabolomics 47 python 46 genomics 43 machine-learning 40 transcriptomics 39 proteomics-data 30 deep-learning 28 proteogenomics 26 omics 25 protein 24 peptide-identification 24 bioconductor 22 tmt 19 data-analysis 18 jupyter-notebook 18 mass 17 peptides 17 data-visualization 16 spectrometry 16 nextflow 16 rna-seq 15 computational-biology 15 pipeline 14 workflow 14 visualization 13 crosslinking 13 cross-linking 13 data-independent-acquisition 13 maxquant 12 xlms 12 crosslinker 12 quantitative-proteomics 12 post-translational-modification 11 python3 11 multiomics 11 single-cell 11 uniprot 11 analysis 10 lipidomics 10 gui 10 rstats 10 search-engine 10 paw-pipeline 10 tmt-data-analysis 10 openms 9 statistics 9 nf-core 9 shiny 9 protein-sequences 9 tandem-ms 9 bioinformatics-pipeline 9 differential-expression 8 peptide-sequences 8 metadata 8 drug-discovery 8 systems-biology 8 phosphoproteomics 8 proteins 8 biology 8 quality-control 8 dia 8 ms2 8 fasta 8 data-integration 8 data-science 8 spectral-library 7 rnaseq 7 proteome-discoverer 7 microbiome 7 msstats 7 sdrf 7 quixot 7 lc-msms 7 quantification 7 java 7 docker 6 chemistry 6 epitopes 6 proteomics-data-integration 6 glycoproteomics 6 r-package 6 genetics 6 visualisation 6 protein-inference 6 isobaric-labeling 6 research 6 proteomics-datasets 6 protein-identification 6 qc 6 protein-structure 6 streamlit 6 irs-normalization 6 enrichment-analysis 6 statistical-analysis 6 pride-database 6