Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: post-translational-modification

Repositories

maxperutzlabs-ms/SiteToProteinNormalization_in_MultiplexProteomics Fork of moritzmadern/SiteToProteinNormalization_in_MultiplexProteomics

Workflow to perform unbiased site-to-protein normalization in multiplex proteomics by accounting for ratio compression effects due to ion interference

Language: R - Size: 55.3 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

moritzmadern/SiteToProteinNormalization_in_MultiplexProteomics

Workflow to perform unbiased site-to-protein normalization in multiplex proteomics by accounting for ratio compression effects due to ion interference

Language: R - Size: 55.3 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 1

Vitek-Lab/MSstatsPTM

Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments

Language: R - Size: 21.7 MB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 7 - Forks: 2

KCLabMTU/LMSuccSite

Improving Protein Succinylation Sites Prediction Using Features Extracted from Protein Language Model

Language: Jupyter Notebook - Size: 105 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 1 - Forks: 2

DavisLaboratory/pyPPI Fork of daniaki/pyPPI

A machine learning tool to assign edges in protein-protein interaction networks with a function.

Language: Python - Size: 10.2 MB - Last synced: 10 days ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0

KCLabMTU/LMCrot

Protein Language Model (pLM) Powered Protein Crotonylation (Kcr) Modified Site Predictor

Language: Python - Size: 22.5 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 0 - Forks: 2

zfyuan/EpiProfile2.0_Family

EpiProfile 2.0: A Computational Platform for Processing Epi-Proteomics Mass Spectrometry Data

Language: MATLAB - Size: 35.2 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 4 - Forks: 0

PedroSeber/CHO_N-glycosylation_prediction

Code and datasets for the publication "Linear and Neural Network Models for Predicting N-glycosylation in Chinese Hamster Ovary Cells Based on B4GALT Levels"

Language: Jupyter Notebook - Size: 4.97 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

PedroSeber/O-GlcNAcylation_Prediction

Code and datasets for the publication "Recurrent Neural Network-based Prediction of O-GlcNAcylation Sites in Mammalian Proteins"

Language: Python - Size: 9.07 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

biodavidjm/artMS

Analytical R Tools for Mass Spectrometry

Language: R - Size: 64.6 MB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 13 - Forks: 7

Aksh77/Bio-Scraper

Web scraper for UniProt and iPTMnet database

Language: Python - Size: 201 KB - Last synced: 7 months ago - Pushed: almost 6 years ago - Stars: 9 - Forks: 0

VenkMallikarjun/BayesENproteomics

Non-linear Bayesian elastic net regression for calculating protein and PTM fold changes from peptide intensities in label-free, bottom-up proteomics on heterogeneous primary human samples.

Language: MATLAB - Size: 11.4 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 1

zfyuan/EpiProfileLite

One minute analysis of histone post-translational modifications by direct infusion mass spectrometry

Size: 3.77 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1

wilhelm-lab/PROSPECT

Proteomics Mass Spectrometry Datasets for Machine Learning

Language: Python - Size: 339 KB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 8 - Forks: 3

chinmayaNK22/PTM-Site-Validator

Validation of modified amino acid sites in peptide sequences by identifying immonium ions in the raw spectra (.mgf format)

Language: Python - Size: 39.1 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid modification, sumoylation, etc).

Language: Python - Size: 6.13 MB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 4 - Forks: 3