TheKinaseLibrary/kinase-library

The Kinase Library: a Global Atlas of the Human Protein Kinome

Language: Jupyter Notebook - Size: 211 MB - Last synced at: 10 days ago - Pushed at: about 1 month ago - Stars: 13 - Forks: 2

PathwayAndDataAnalysis/causalpath

A project for exploring differentially active signaling paths related to proteomics datasets

Language: Java - Size: 12.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 42 - Forks: 11

saezlab/cosmosR

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

Language: R - Size: 51.7 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 62 - Forks: 16

broadinstitute/ssGSEA2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

Language: R - Size: 30.6 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 289 - Forks: 79

shibalili/systemin-project

Phosphorylation landscape on time-resolved SYR1-dependent systemin signaling pathway

Language: R - Size: 28.7 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

meyer-lab/DDMC

Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.

Language: Python - Size: 673 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1

GumusLab/PhosNetVis

PhosNetVis is a web-based platform for integrated kinase enrichment analyses and interactive 2D/3D network visualizations of phosphoproteomics datasets.

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ryuhjinahn/Protocols_process_MS_data

R codes for processing MS data

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RafRomB/PhosphoFind

PhosphoFind provides functions to identify phosphorylation positions (aminoacid number in proteins) in phosphoproteomics experiments.

Language: R - Size: 8.05 MB - Last synced at: 2 days ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

celiaccb/KinasesCommunityDetection

Python pipeline to build empirical kinase networks and identify kinase signalling communities from quantitative phosphoproteomics data.

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liuzan-info/PhosMap

An Ensemble Bioinformatic Platform to Empower Interactive Analysis of Quantitative Phosphoproteomics.

Language: R - Size: 223 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 4

lucasragr/Phosphosite_localization

It assigns the phosphorylation site in protein

Language: R - Size: 3.91 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

bzhanglab/DeepRescore2

DeepRescore2: deep learning prediction boosts phosphoproteomics-based discoveries through improved phosphopeptide identification

Language: Python - Size: 955 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

biodavidjm/artMS

Analytical R Tools for Mass Spectrometry

Language: R - Size: 64.6 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 13 - Forks: 7

jdrudolph/photon

PHOsphoproteomic dissecTiOn using Networks

Language: Python - Size: 55.6 MB - Last synced at: 2 months ago - Pushed at: over 4 years ago - Stars: 17 - Forks: 5

evocellnet/ptm_hotspots

Estimate PTM hotspots in protein sequence alignments

Language: Python - Size: 3.02 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 9 - Forks: 2

fpozoc/phosphoproteomics

Some phosphoproteomics useful notebooks and sources

Language: Jupyter Notebook - Size: 1.1 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

davwong47/Circadian-proteomics

Custom analysis of in vitro circadian proteomics and phosphoproteomics using multiple sets of 10plex TMT with two genotypes

Language: R - Size: 76.1 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 2

icervenka/phosphopep

Language: PHP - Size: 317 KB - Last synced at: almost 2 years ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0