loucerac/drexml

(DRExM³L) Drug REpurposing using eXplainable Machine Learning and Mechanistic Models of signal transduction

Language: Python - Size: 80 MB - Last synced: 6 days ago - Pushed: 2 months ago - Stars: 5 - Forks: 0

dweth/mcsnac

Code for analysis of single cell signaling network kinetics from flow cytometry (CyTOF) datasets

Language: Fortran - Size: 183 KB - Last synced: 29 days ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

chinghao0703/InfomaxDesign

Language: Matlab - Size: 614 KB - Last synced: about 2 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

boutroslab/Supp_Heigwer_2021

The functional analysis of genes provides relevant information to understand cellular function. Further, the mapping of genetic interactions sheds light on how genes act in the emergence of cellular complexity. Here, we present the most extensive genetic interaction and morphological profiling screen in a metazoan cell to date. We profiled 680 000 pairwise RNAi perturbations in more than 38 billion cells and analyzed 73 morphological features by high-throughput imaging.

Language: HTML - Size: 453 MB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1

Xinglab/PEGASAS

Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

Language: Python - Size: 54.8 MB - Last synced: 3 months ago - Pushed: almost 2 years ago - Stars: 18 - Forks: 11

PiotrTymoszuk/collagen_pca

Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma

Language: R - Size: 144 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

arnaudporet/pathrider

Finding paths of interest in networks

Language: Go - Size: 2.3 MB - Last synced: 5 months ago - Pushed: about 2 years ago - Stars: 3 - Forks: 2

ModelDBRepository/267736

Biochemical Systems Theory Model of SARS-CoV-2 infection network (Sasidharakurup et al., 2021)

Size: 136 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

okadalabipr/cancer_modeling

Modeling signaling networks in cancer

Language: Python - Size: 1.97 MB - Last synced: 4 months ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 3

jdrudolph/photon

PHOsphoproteomic dissecTiOn using Networks

Language: Python - Size: 55.6 MB - Last synced: 14 days ago - Pushed: over 3 years ago - Stars: 17 - Forks: 4

arnaudporet/sbgn2sif

Converting SBGN encoded pathways to the SIF file format

Language: Python - Size: 185 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 2 - Forks: 2

arnaudporet/kgml2sif

Converting KGML encoded KEGG pathways to the SIF file format

Language: Python - Size: 2.96 MB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 2

meyer-lab/Barney-Peyton

Code for modeling performed in Barney et al.

Size: 1.95 MB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

vembha/TCS_crosstalk_evolution

Code repository for the publication. Contains MATLAB codes and sequence data used for evolutionary analysis.

Language: MATLAB - Size: 2.01 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 1

osh/gr-eventstream

gr-eventstream is a set of GNU Radio blocks for creating precisely timed events and either inserting them into, or extracting them from normal data-streams precisely. It allows for the definition of high speed time-synchronous c++ burst event handlers, as well as bridging to standard GNU Radio Async PDU messages with precise timing easily.

Language: C++ - Size: 842 KB - Last synced: over 1 year ago - Pushed: over 6 years ago - Stars: 38 - Forks: 27

inuritdino/COMMAP

Ligand-Receptor Interaction map based on scRNA-seq and pathway enrichment

Language: R - Size: 5.13 MB - Last synced: over 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 1

mallika2608/pgm-project

Structure learning for protein signaling pathways

Language: Python - Size: 741 KB - Last synced: over 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0