Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: pathway-tools
AuReMe/mpwt
Pathway Tools multiprocessing wrapper (for PathoLogic).
Language: Python - Size: 555 KB - Last synced: 15 days ago - Pushed: about 2 months ago - Stars: 9 - Forks: 0
willgryan/PAVER
PAVER: Pathway Analysis Visualization with Embedding Representations
Language: R - Size: 745 KB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 1 - Forks: 0
GioStamoulos/PLFG-Toolkit
A pathologic file generator (PLFG) is implemented to assist and facilitate the curation progress of every computationally predicted pathway genome database (PGDB).
Language: Python - Size: 1.23 MB - Last synced: 23 days ago - Pushed: about 2 years ago - Stars: 4 - Forks: 0
hallamlab/pathway2vec
Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction
Language: Python - Size: 2.71 MB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 14 - Forks: 2
hallamlab/mlLGPR
Metabolic pathway inference using multi-label classification with rich pathway features
Language: Python - Size: 1.56 MB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 5 - Forks: 0
arnaudporet/pathrider
Finding paths of interest in networks
Language: Go - Size: 2.3 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 3 - Forks: 2
AuReMe/mpwt-docker
A dockerfile for multiprocessing Pathway-Tools.
Language: Dockerfile - Size: 4.88 KB - Last synced: 8 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0
AuReMe/mpwt-singularity
Singularity recipe for Pathway-Tools and mpwt.
Language: Singularity - Size: 5.86 KB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
hallamlab/leADS
leADS: improved metabolic pathway inference based on active dataset subsampling
Language: Python - Size: 5.45 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
hallamlab/chap
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
Language: Python - Size: 354 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1