Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: metabolic-pathways
mauriceling/advancesyntoolkit
Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
Language: Python - Size: 15.3 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 12 - Forks: 40
jotech/gapseq
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
Language: R - Size: 396 MB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 139 - Forks: 28
iquasere/KEGGCharter
A tool for representing genomic potential and transcriptomic expression into KEGG pathways
Language: Python - Size: 519 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 43 - Forks: 6
PathVisio/FindYourInteraction
PathVisio plugin to find relevant metabolic reactions from Rhea
Language: Java - Size: 13.7 KB - Last synced: about 2 months ago - Pushed: about 6 years ago - Stars: 1 - Forks: 1
brsynth/straindesign
Library to perform metabolic engineering tasks
Language: Python - Size: 10.4 MB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 4 - Forks: 0
y1zhou/metabolike
Identifying reprogrammed metabolic routes given omics data.
Language: Python - Size: 1.67 MB - Last synced: 7 days ago - Pushed: over 1 year ago - Stars: 5 - Forks: 0
tubanlee/MM
Infer metabolic directions from moment differences of mass-weighted intensity distributions
Language: R - Size: 4.17 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 186 - Forks: 14
mathieubolteau/M1_PDP_Project
Web application of metabolics pathway visualisation, for the Gencovery business (https://gencovery.com/), created during the PDP project during the M1 of the Master of Bioinformatics, in Bordeaux.
Language: JavaScript - Size: 982 KB - Last synced: 5 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
bebop/ark
Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
Language: Go - Size: 17 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 19 - Forks: 5
munozalexander/MetNet
A basic network of human metabolism, including key enzymes, intermediates, and hormonal influences
Language: Swift - Size: 362 KB - Last synced: 10 months ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0
bioasp/meneco
:m: Metabolic network completion
Language: Jupyter Notebook - Size: 6.78 MB - Last synced: 2 days ago - Pushed: about 1 year ago - Stars: 9 - Forks: 9
ToniWestbrook/paladin-plugins
Pipeline plugins for PALADIN, providing HPC support, abundance (taxonomy, go terms), customized reports, etc
Language: Python - Size: 77.1 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 1
arbasher/prepBioCyc
prepBioCyc: Preprocess BioCyc files
Language: Python - Size: 343 KB - Last synced: 11 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
hallamlab/leADS
leADS: improved metabolic pathway inference based on active dataset subsampling
Language: Python - Size: 5.45 MB - Last synced: 17 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
cnapy-org/efmtool_link
Language: Python - Size: 5.3 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
hallamlab/chap
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
Language: Python - Size: 354 KB - Last synced: 17 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
hallamlab/reMap
reMap: relabeling metabolic pathway data with groups to improve prediction outcomes
Language: Python - Size: 1.26 MB - Last synced: 17 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
hallamlab/triUMPF
Metabolic pathway inference using non-negative matrix factorization with community detection
Language: Python - Size: 2.42 MB - Last synced: 17 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
MetExplore/dexom
Diversity-based enumeration of optimal context-specific metabolic networks
Language: MATLAB - Size: 2.32 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 5 - Forks: 1
MetaNetX/MNXref
MNXref: Reconciliation of metabolites and biochemical reactions for metabolic networks
Size: 0 Bytes - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0