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GitHub topics: metacyc

hallamlab/pathway2vec

Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction

Language: Python - Size: 2.71 MB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 14 - Forks: 2

hallamlab/mlLGPR

Metabolic pathway inference using multi-label classification with rich pathway features

Language: Python - Size: 1.56 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 0

arbasher/prepBioCyc

prepBioCyc: Preprocess BioCyc files

Language: Python - Size: 343 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

hallamlab/leADS

leADS: improved metabolic pathway inference based on active dataset subsampling

Language: Python - Size: 5.45 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

hallamlab/chap

CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)

Language: Python - Size: 354 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

hallamlab/reMap

reMap: relabeling metabolic pathway data with groups to improve prediction outcomes

Language: Python - Size: 1.26 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

hallamlab/triUMPF

Metabolic pathway inference using non-negative matrix factorization with community detection

Language: Python - Size: 2.42 MB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1

Related Keywords
biocyc 7 bioinformatics 7 metacyc 7 metabolic-pathways 5 metagenomics 5 pathway-prediction 4 pathway-tools 4 multi-label-learning 4 metabolic-network 3 metabolic-reconstruction 2 topic-modeling 2 multi-label-classification 2 pathway2vec 1 relabel 1 groups-of-pathways 1 groups 1 embeddings 1 centroid 1 community-detection 1 non-negative-matrix-factorization 1 bags-of-pathways 1 bags 1 pathway2ec-association-matrix 1 pathway-reconstruction 1 pathway-enrichment-analysis 1 subnetwork 1 deep-learning 1 embedding 1 heterogeneous-information-networks 1 metapath 1 logistic-regression 1 bioinformatics-analysis 1 bioinformatics-pipeline 1 bioinformatics-tool 1 data-wrangling 1 graph 1 heterogeneous-network 1 acquisition-functions 1 active-dataset-subsampling 1 metabolic-pathway-prediction 1 multi-label-classfications 1 multi-label-imbalance 1 pathway-analysis 1