GitHub topics: bioinformatics-tool
JianYang-Lab/gsMap
Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
Language: Python - Size: 24.7 MB - Last synced at: about 2 hours ago - Pushed at: 1 day ago - Stars: 159 - Forks: 15
ShujiaHuang/mitoquest
Human Mitochondrial sequencing data Analysis Toolkit. Fetching information like variants, heteroplasmy/homoplasmy, etc. on mitochondrial genome from sequencing data
Language: C - Size: 27.5 MB - Last synced at: about 7 hours ago - Pushed at: 1 day ago - Stars: 4 - Forks: 0
LDolanLDolan/dna-str-matcher
A web-based tool that detects short tandem repeats in DNA and highlights potential gene-like structures using custom input.
Language: Python - Size: 21.5 KB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 0 - Forks: 0
mikeph52/BioGenie
BioGenie is a complete bioinformatics command line tool, written in C++.
Language: C++ - Size: 2.1 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 1 - Forks: 0
YaoYinYing/RosettaPy
A Python utility for wrapping Rosetta command line tools.
Language: Python - Size: 807 KB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 0 - Forks: 0
gbif/hp-asean
Biodiversity Informatics and Geospatial Analysis, ASEAN Centre for Biodiversity
Language: HTML - Size: 139 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 1 - Forks: 2
hermanzhaozzzz/bioat
bioat, a python package & command line toolkit for Bioinformatics and data science!
Language: Python - Size: 124 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 4 - Forks: 0
satoshikawato/bio_small_scripts
Trivial utilities
Language: Python - Size: 244 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 4 - Forks: 3
RubenVG02/BioInsectiNet
This Python project uses neural networks and genetic algorithms to design bioinsecticide compounds targeting specific proteins. By leveraging IC50 values from FASTA sequences, it generates and optimizes SMILES representations, enhancing the efficacy and specificity of bioinsecticides.
Language: Python - Size: 736 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 4 - Forks: 0
inab/trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Language: C++ - Size: 56.5 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 213 - Forks: 48
rcedgar/reseek
Protein structure alignment and search algorithm
Language: C++ - Size: 24.6 MB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 63 - Forks: 3
BioAnalyticResource/ePlant_Plant_eFP
A data visualization tool to display tissue expression data for Arabidopsis thaliana
Language: JavaScript - Size: 6.37 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 5 - Forks: 1
oh-jinwoo94/gkm-align
gapped-kmer based whole genome alignment software
Language: C++ - Size: 231 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 8 - Forks: 0
whl-usc/rna2d3d
Scripts and reference files relevant to the computational analysis of data generated by crosslink-ligation based experiments.
Language: Python - Size: 52 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 1 - Forks: 0
SimonHegele/MapSampler
Command line tool for mapping based nucleotide sequence filtering
Language: Python - Size: 484 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 1 - Forks: 0
riccabolla/PCNE
Plasmid Copy Number Estimator is a tool to estimate the copy numbers of plasmids detected in an assembled genome
Language: Shell - Size: 165 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 1 - Forks: 0
telatin/covtobed
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
Language: Makefile - Size: 48.1 MB - Last synced at: 2 days ago - Pushed at: 30 days ago - Stars: 45 - Forks: 3
madsondeluna/procurator
Procurator é uma ferramenta de linha de comando em Python para análise de sequências de DNA procariótico em arquivos FASTA. Atividade avaliativa da disciplina de Ambientes de Computação para Bioinformática da UFMG.
Language: Python - Size: 15.6 KB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0
lignum-vitae/biobase
A home for all biological/bioinformatics constants from protein strings to BLOSUM matrices.
Language: Python - Size: 159 KB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 4 - Forks: 2
epifluidlab/FinaleToolkit
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
Language: Python - Size: 82.5 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 24 - Forks: 9
rajanbit/Archive
Archive of all the tools and pipelines
Language: Python - Size: 174 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 5 - Forks: 1
ncbi/tree-tool
Incremental building of phylogenetic distance trees
Language: HTML - Size: 75.4 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 25 - Forks: 10
Superzchen/iFeatureOmega-CLI
iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequences, 3D structures and ligands. To the best of our knowledge, iFeatureOmega supplies the largest number of feature extraction and analysis approaches for most molecule types compared to other pipelines. Three versions (i.e. iFeatureOmega-Web, iFeatureOmega-GUI and iFeatureOmega-CLI) of iFeatureOmega have been made available to cater to both experienced bioinformaticians and biologists with limited programming expertise. iFeatureOmega also expands its functionality by integrating 15 feature analysis algorithms (including ten cluster algorithms, three dimensionality reduction algorithms and two feature normalization algorithms) and providing nine types of interactive plots for statistical features visualization (including histogram, kernel density plot, heatmap, boxplot, line chart, scatter plot, circular plot, protein three dimensional structure plot and ligand structure plot). iFeatureOmega is an open-source platform for academic purposes. The web server can be accessed through http://ifeature2.erc.monash.edu and the GUI and CLI versions can be download at: https://github.com/Superzchen/iFeatureOmega-GUI and https://github.com/Superzchen/iFeatureOmega-CLI, respectively.
Language: Python - Size: 8.58 MB - Last synced at: 11 days ago - Pushed at: almost 2 years ago - Stars: 34 - Forks: 10
ncsa/NEAT
NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
Language: Python - Size: 109 MB - Last synced at: 13 days ago - Pushed at: about 1 month ago - Stars: 59 - Forks: 17
bryancastillo10/dna-seq-explorer
Web App for Basic Molecular Biology Analysis (with trained AI feature for DNA Type/Possible Taxa Prediction)
Language: TypeScript - Size: 8.42 MB - Last synced at: 13 days ago - Pushed at: 20 days ago - Stars: 1 - Forks: 0
genotoul-bioinfo/Binette
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
Language: Python - Size: 620 KB - Last synced at: 2 days ago - Pushed at: 6 days ago - Stars: 35 - Forks: 1
ZarnackGroup/racoon_clip
racoon_clip processes your iCLIP and eCLIP data from raw files to single-nucleotide crosslinks in a single step.
Language: HTML - Size: 21.1 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 2 - Forks: 1
tseemann/abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
Language: Perl - Size: 15.5 MB - Last synced at: 21 days ago - Pushed at: over 1 year ago - Stars: 423 - Forks: 96
Bjorn99/Crispradium
A web application that helps researchers design optimal CRISPR guide RNA sequences. It analyzes input DNA, identifies potential target sites, and scores the guide RNAs based on factors like GC content, secondary structure, and off-target potential.
Language: Python - Size: 446 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 1 - Forks: 0
JamieHeather/stitchr
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
Language: Python - Size: 31 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 54 - Forks: 10
ebi-jdispatcher/taxonomy-resolver
Builds lists of Taxonomy Identifiers based on the NCBI Taxonomy Database
Language: Python - Size: 109 MB - Last synced at: 2 days ago - Pushed at: 23 days ago - Stars: 3 - Forks: 3
agmcfarland/GeneGrouper
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
Language: Python - Size: 61.5 MB - Last synced at: 3 days ago - Pushed at: 8 months ago - Stars: 20 - Forks: 5
sian-davies/mcp-ncbi-blast
MCP Server and Gradio app for performing NCBI Blast on a DNA sequence
Language: Python - Size: 8.79 KB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0
Bjorn99/DNA2Protein
DNA2Protein is a web application that translates DNA sequences into protein sequences using a codon table. The application is built with Flask, a lightweight web framework for Python, and utilizes Tailwind CSS for a modern and responsive user interface.
Language: Python - Size: 531 KB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 1 - Forks: 0
febos/SQUARNA
RNA secondary structure prediction tool
Language: Jupyter Notebook - Size: 162 MB - Last synced at: 28 days ago - Pushed at: 2 months ago - Stars: 18 - Forks: 2
mikeph52/BioBatch
BioBatch is a growth medium calculator for cell proliferation based on popular growth media recipes.
Size: 51.8 KB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 1 - Forks: 0
YaqiangCao/cLoops2
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
Language: Python - Size: 251 MB - Last synced at: 28 days ago - Pushed at: 30 days ago - Stars: 47 - Forks: 8
vihaankulkarni29/FastaAAExtractor
Language: Jupyter Notebook - Size: 1.7 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 0 - Forks: 0
Superzchen/iFeatureOmega-GUI
iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequences, 3D structures and ligands. To the best of our knowledge, iFeatureOmega supplies the largest number of feature extraction and analysis approaches for most molecule types compared to other pipelines. Three versions (i.e. iFeatureOmega-Web, iFeatureOmega-GUI and iFeatureOmega-CLI) of iFeatureOmega have been made available to cater to both experienced bioinformaticians and biologists with limited programming expertise. iFeatureOmega also expands its functionality by integrating 15 feature analysis algorithms (including ten cluster algorithms, three dimensionality reduction algorithms and two feature normalization algorithms) and providing nine types of interactive plots for statistical features visualization (including histogram, kernel density plot, heatmap, boxplot, line chart, scatter plot, circular plot, protein three dimensional structure plot and ligand structure plot). iFeatureOmega is an open-source platform for academic purposes. The web server can be accessed through http://ifeature2.erc.monash.edu and the GUI and CLI versions can be download at: https://github.com/Superzchen/iFeatureOmega-GUI and https://github.com/Superzchen/iFeatureOmega-CLI, respectively.
Language: Python - Size: 23.6 MB - Last synced at: 4 days ago - Pushed at: about 3 years ago - Stars: 31 - Forks: 7
Aridoge13/Computational_Biology
Independent Computational Biology Projects
Language: Python - Size: 1.31 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
hernanmd/BioSmalltalk
Bioinformatics Library for Pharo
Language: Smalltalk - Size: 88.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 21 - Forks: 3
Dinesh431786/Crispr
Accelerate DNA gene editing projects with intuitive, AI-powered CRISPR gRNA design and analysis
Language: Python - Size: 208 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
patrikkaura/dna-analyser-ibp
DNA analyser IBP - api wrapper for bioinformatics.ibp used for creating R-loop tracker, P53predictor, G4Killer and G4Hunter analysis
Language: Python - Size: 9.59 MB - Last synced at: 17 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0
mt1022/gppy
[G]enomic [P]ositioning with [Py]thon
Language: Python - Size: 2.99 MB - Last synced at: 21 days ago - Pushed at: 8 months ago - Stars: 12 - Forks: 2
BioGavin/psmpa
💡 Predict Secondary Metabolism Potential using Amplicons
Language: Jupyter Notebook - Size: 38.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 1
aljpetri/isONform
De novo construction of isoforms from long-read data
Language: Python - Size: 771 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 28 - Forks: 3
vihaankulkarni29/GeneAAExtractor
Language: Jupyter Notebook - Size: 17.6 KB - Last synced at: 16 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
lightdock/lightdock
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Language: Python - Size: 93.4 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 341 - Forks: 47
Qaswara98/Thesis_PCA_vs_AE
This project is a comparative study of Autoencoder (AE) and Principal Component Analysis (PCA) for dimensionality reduction in gene expression data. It aims to understand the unique capabilities and applications of both methods in handling high-dimensional biological data.
Language: Jupyter Notebook - Size: 428 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
KarchinLab/open-cravat
A modular annotation tool for genomic variants
Language: JavaScript - Size: 9.27 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 123 - Forks: 33
GuyTeichman/RNAlysis
Analyze your RNA sequencing data without writing a single line of code
Language: Python - Size: 797 MB - Last synced at: 6 days ago - Pushed at: about 1 month ago - Stars: 135 - Forks: 13
RaannaKasturi/scientry_app
Scientry App: Science Simplified, Knowledge Amplified
Language: C++ - Size: 138 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
connyyu/pdbstats
Number of macromolecular structures determined by various experimental techniques, based on information from the RCSB PDB database.
Language: Python - Size: 164 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
mansikath/Variant-calling
Repository for variant calling utilizing bioinformatics tools and databases
Size: 10.7 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
JoshuaIszatt/phunky
Nanopore long read assembly data pipeline for phage genomes
Language: Python - Size: 151 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
vidboda/MobiDetails
WebApp for DNA variants interpretation
Language: Python - Size: 13.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 13 - Forks: 6
chriscainx/mnnpy
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
Language: Python - Size: 1.05 MB - Last synced at: 29 days ago - Pushed at: over 2 years ago - Stars: 75 - Forks: 33
Superzchen/iLearnPlus
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
Language: Python - Size: 31.7 MB - Last synced at: 28 days ago - Pushed at: over 1 year ago - Stars: 108 - Forks: 33
ShujiaHuang/geneview
Genomics data visualization in Python by using matplotlib.
Language: Python - Size: 10.8 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 65 - Forks: 8
Kukuster/SumStatsRehab
GWAS summary statistics files QC tool
Language: Python - Size: 1.87 MB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 40 - Forks: 6
ncbi/stxtyper
StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
Language: C++ - Size: 1.18 MB - Last synced at: 13 days ago - Pushed at: 2 months ago - Stars: 16 - Forks: 7
Gardner-BinfLab/TISIGNER-ReactJS
TISIGNER: Unleash the power of synthetic biology
Language: JavaScript - Size: 160 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 22 - Forks: 6
ntanmayee/decoden
🌊 Analyse experimental conditions and replicates jointly to remove cell-type specific bias in multi-condition ChIP-Seq
Language: Python - Size: 206 MB - Last synced at: 6 days ago - Pushed at: 28 days ago - Stars: 8 - Forks: 1
daisybio/DIGGER
Exploring Isoform-specific interactions
Language: Python - Size: 55.4 MB - Last synced at: 4 days ago - Pushed at: about 2 months ago - Stars: 11 - Forks: 2
haschka/mnhn-tree-tools
MNHN-Tree-Tools a software for phylogenetic inference of millions of sequences
Language: Roff - Size: 20.5 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1
ValldHebron-Bioinformatics/minMutFinder
Tool written in Python and Bash implemented in a Nextflow pipeline that accurately identifies mutations and assesses their frequencies, accounting for multiple nucleotide mutations occurring within a single codon. Additionally, it can annotate mutations associated to phenotypical changes in viral populations based on user-supplied datasets.
Language: Python - Size: 79.7 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
UmbertoDellaMonica/fp-mash
Fp-Mash contains an adaptation of the Mash tool specifically designed to process fingerprints as part of the lyn2vec project. The main objective is to leverage the capabilities of Mash for fast and efficient genome and metagenome distance estimation, and apply these features to the vectorization tasks in lyn2vec
Language: C++ - Size: 42.7 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0
LaboratorioBioinformatica/PHEMALE
PHEMALE-Bacteria: tool for prediction of bacterial phenotypes based on its genome
Language: Python - Size: 79.6 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
febos/SQUARNA-data
SQUARNA benchmark data
Language: Jupyter Notebook - Size: 105 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
avrabyt/YouTube-Tutorials
📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈
Language: Python - Size: 696 KB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 118 - Forks: 48
cliffren/scSurvival
scSurvival is a new tool for survival analysis from single cell cohort dataset.
Language: Python - Size: 7.79 MB - Last synced at: 29 days ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
bcgsc/tigmint
⛓ Correct misassemblies using linked AND long reads
Language: Python - Size: 20.9 MB - Last synced at: 24 days ago - Pushed at: almost 2 years ago - Stars: 60 - Forks: 13
engkinandatama/NCBI-Sequence-Fetcher
NCBI Sequence Fetcher is a Python desktop app for downloading nucleotide sequences and extracting metadata from NCBI. It features an easy-to-use GUI, supports FASTA and GenBank formats, and helps researchers students and bioinformaticians efficiently collect DNA sequences and store metadata in Excel files.
Language: Python - Size: 26.4 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
daisybio/easyLiftover
This repository wraps the pyliftover package to provide an option for lifting over common bioinformatics file types.
Language: Python - Size: 480 KB - Last synced at: 29 days ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0
daisybio/NEASE
A network-based approach for exon set enrichment
Language: Python - Size: 49.3 MB - Last synced at: 22 days ago - Pushed at: 4 months ago - Stars: 15 - Forks: 2
mikeph52/GC-Genie
GC-Genie is a GC percentage calculator written in C++.
Size: 20.5 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0
biopatternsg/biopatternsg
biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.
Size: 230 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 1
febos/ContExt
Contact Extractor from PDB/mmCIF coordinate files
Language: Python - Size: 214 KB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
JasonHunter95/microDNA-Detection-and-Analysis
A reproducible pipeline for detecting, extracting, and annotating small extrachromosomal circular DNA (eccDNA) from high‑throughput sequencing data.
Language: Python - Size: 69.3 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
tom21100227/Marker
A small utils tool to label videos effciently.
Language: Python - Size: 134 KB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
xinglab-ai/genomap
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
Language: Python - Size: 43.7 MB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 19 - Forks: 3
miano-fc/MaxQuant-Tools
Tools for preprocessing and normalizing results of MaxQuant experiments and their respective controls from a run by normalizing data from the output peptides.txt file.
Language: Python - Size: 51.8 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0
muellan/metacache
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Language: C++ - Size: 149 MB - Last synced at: about 2 months ago - Pushed at: 4 months ago - Stars: 60 - Forks: 13
bcgsc/RNA-Bloom
:hibiscus: reference-free transcriptome assembly for short and long reads
Language: Java - Size: 2.41 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 103 - Forks: 8
niekwit/snakefetch
A tool to fetch workflow and config files from a Snakemake repository on GitHub
Language: Python - Size: 21.5 KB - Last synced at: 20 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 0
zhengxinchang/swapfinder
Fast and accurate sample swap identification
Language: Rust - Size: 29.3 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
sebastianstupak/biolens
Bioinformatics CLI tool for analysis and visualization
Language: Rust - Size: 771 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 1
wjwei-handsome/ZeaGeneMap
A python tool for identifying the mapping of genes between two genomes.
Language: Python - Size: 374 KB - Last synced at: 17 days ago - Pushed at: almost 3 years ago - Stars: 7 - Forks: 0
anuradhawick/seq2vec
Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!
Language: C++ - Size: 7.26 MB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 0
OndrejSladky/kmercamel
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
Language: C++ - Size: 8.07 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 16 - Forks: 3
bobeobibo/phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
Language: HTML - Size: 6.8 MB - Last synced at: 21 days ago - Pushed at: over 1 year ago - Stars: 52 - Forks: 15
SydneyBioX/sc_bench_benchmark
Language: R - Size: 902 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 0
JetBrains-Research/snakecharm
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
Language: Python - Size: 3.91 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 62 - Forks: 7
YihDu/CEMUSA
Language: HTML - Size: 1.47 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 3 - Forks: 0
delosh653/ECHO
An application to find and visualize circadian rhythms in time course data using extended harmonic oscillators.
Language: R - Size: 6.86 MB - Last synced at: 1 day ago - Pushed at: about 5 years ago - Stars: 14 - Forks: 0
neeson-lab/AMMIT
AMMIT is an R package designed to streamline the processing of immunofluorescence data.
Language: R - Size: 2 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
alexyzha/CUDA-Bioinformatics
A CUDA-Accelerated Bioinformatics Toolchain
Language: C++ - Size: 219 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
ErickNavarroD/RAMEN
Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.
Language: R - Size: 12.6 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0
omics-lab/VirusTaxo
VirusTaxo: Taxonomic classification of viruses from sequence
Language: Python - Size: 231 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 1
bcgsc/goldrush
Linear-time de novo Long Read Assembler
Language: C++ - Size: 4.26 MB - Last synced at: about 2 months ago - Pushed at: 6 months ago - Stars: 40 - Forks: 2