Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: bioinformatics-data

Repositories

Bio2Byte/public_notebooks

Repository of Jupyter Notebooks created by the Bio2Byte group

Language: Jupyter Notebook - Size: 1.18 MB - Last synced: about 24 hours ago - Pushed: 8 days ago - Stars: 9 - Forks: 0

sensodevices/motor-skills-rehab-research-kit

Contains a sample dataset with rehab sessions of stroke victims and data preparation example

Language: Jupyter Notebook - Size: 15.5 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 0 - Forks: 0

BioAnalyticResource/ePlant_Plant_eFP

A data visualization tool to display tissue expression data for Arabidopsis thaliana

Language: JavaScript - Size: 6.32 MB - Last synced: 10 days ago - Pushed: 5 months ago - Stars: 3 - Forks: 0

V-Z/hybseq-course

Materials for course about processing HybSeq data on computing grids

Language: TeX - Size: 1.36 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

MultiQC/test-data

Test data for MultiQC.

Language: HTML - Size: 144 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 19 - Forks: 141

kmhernan/awesome-bioinformatics-formats

Curated list of bioinformatics formats and publications

Size: 72.3 KB - Last synced: 12 days ago - Pushed: about 5 years ago - Stars: 52 - Forks: 4

nicgirault/circosJS

d3 library to build circular graphs

Language: JavaScript - Size: 7.2 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 500 - Forks: 116

jithin8mathew/Protein-feature-extraction

Python code to extract features from Protein sequences for Machine Learning/Deep Learning

Language: Python - Size: 1.56 MB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 17 - Forks: 2

hannahvoelker/Microbiome-graph Fork of BioSeq/Microbiome-graph

Produces a network of given microbiome data

Language: Python - Size: 277 KB - Last synced: 2 months ago - Pushed: almost 8 years ago - Stars: 1 - Forks: 0

cancervariants/therapy-normalization

Services and guidelines for normalizing drug and other therapy terms

Language: Python - Size: 3.05 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 10 - Forks: 3

BioJulia/ReadDatastores.jl

Datastores for reads, not your papa's FASTQ files.

Language: Julia - Size: 618 KB - Last synced: about 2 months ago - Pushed: 10 months ago - Stars: 11 - Forks: 4

mansikath/Fasta-to-Genbank-Converter

A simple Python script using Biopython to convert FASTA files to GenBank format. The script prompts the user for input and output filenames, along with the molecule type (default is DNA). Ensure accurate and annotated GenBank files for your biological sequence data.

Language: Python - Size: 5.86 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

hchauvin/fluodilution 📦

Fluorescence dilution/proliferation assay toolkit in R 🔬📊

Language: R - Size: 3.41 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

gversmee/dbgap2x

Language: Jupyter Notebook - Size: 8.58 MB - Last synced: 7 months ago - Pushed: almost 5 years ago - Stars: 8 - Forks: 7

emir-munoz/adr-prediction

Supplemental material for the paper "Facilitating Prediction of Adverse Drug Reactions by Using Knowledge Graphs and Multi-Label Learning Models".

Language: CSS - Size: 11.7 KB - Last synced: 7 months ago - Pushed: almost 6 years ago - Stars: 4 - Forks: 3

bioinfweb/JPhyloIO

A Java library for event-based reading and writing of different phylogenetic file formats through a common interface

Language: Java - Size: 8.06 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

FatemehGholamzadeh/BWT-on-Gene-Sequence

implementation of Burrows–Wheeler transform on a Gene Sequence - Bioinformatics Course - Fall 2019

Language: Python - Size: 1.44 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0

Nekose/ICAP_Crawler

A web crawler which scrapes https://anapatterns.org. Visits each of the IC pattern pages, and collects the related antigens.

Language: Python - Size: 21.5 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

JFresnedo/AmpSeq

A framework for semi-automated analysis of Amplicon Sequencing data

Language: Perl - Size: 331 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 4

gkoulouras/PDB-amino-acid-ratio

A console application for the ration calculation of amino acids from a PDB file.

Language: Visual Basic - Size: 531 KB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

fg6/YeastStrainsStudy

Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.

Language: Shell - Size: 561 KB - Last synced: 7 months ago - Pushed: over 6 years ago - Stars: 3 - Forks: 5

loggy01/EBV-transcript-variation-pipeline

Calculates Cp- and Wp-initiated transcript variation (Epstein-Barr virus)

Language: R - Size: 950 KB - Last synced: 9 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

BD2KGenomics/bioapi-examples

Code examples for working with web based bioinformatics APIs

Language: Jupyter Notebook - Size: 2.12 MB - Last synced: 10 months ago - Pushed: over 7 years ago - Stars: 9 - Forks: 9

hidelab/pathprintGEOData

Size: 173 MB - Last synced: 10 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

nilesh-tawari/ChronQC

Manuscript describing ChronQC is now available online in Bioinformatics

Language: HTML - Size: 39.3 MB - Last synced: about 1 month ago - Pushed: almost 5 years ago - Stars: 17 - Forks: 8

gkoulouras/seq-sec-ratio

A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.

Language: Visual Basic - Size: 812 KB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 3 - Forks: 0