evolbioinfo/gotree

Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

Language: Go - Size: 1.98 MB - Last synced at: 26 days ago - Pushed at: 2 months ago - Stars: 132 - Forks: 16

js51/SplitP

Python package that implements split- and rank-based tools for inferring phylogenies, such as flattenings and subflattenings.

Language: Python - Size: 3.95 MB - Last synced at: 8 days ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1

simonpenel/light_phylogeny

Light phylogeny library for Rust

Language: Rust - Size: 3.84 MB - Last synced at: 27 days ago - Pushed at: 4 months ago - Stars: 10 - Forks: 0

genpat-it/dist2mst

High-performance tool for constructing Minimum Spanning Trees from symmetric distance matrices. Features Numba-accelerated algorithms, parallel processing, and zero-distance grouping. Outputs MST in standard Newick format.

Language: Python - Size: 45.9 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

DeadlineWasYesterday/BioNick

Software for manipulating Newick strings and adding phylogenies to Matplotlib visuals.

Language: Python - Size: 275 KB - Last synced at: 18 days ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

fmichonneau/rncl

An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data

Language: C++ - Size: 24.5 MB - Last synced at: about 16 hours ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 3

SimonGreenhill/treemaker

A Python library for creating a Newick formatted tree from a set of classification strings

Language: Python - Size: 1.04 MB - Last synced at: 5 days ago - Pushed at: 11 months ago - Stars: 10 - Forks: 2

vibbits/phylio

Read, write, and manipulate phylogenetic trees

Language: PureScript - Size: 819 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 3 - Forks: 0

zxjsdp/nodefinder-go

Go implementation of NodeFinder program.

Language: Go - Size: 32.2 KB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0

RoanH/NGLTree Fork of bartwesselink/dbl-visualization

NGL Tree is a web application to visualise and explore datasets stored in the Newick file format.

Language: TypeScript - Size: 5.08 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

bingbig/BioTools

php biology tools for phylogeny tree ...

Language: PHP - Size: 3.91 KB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0

Picani/fastax

Make phylogenetic trees and lineages from the NCBI Taxonomy database

Language: Rust - Size: 71.3 KB - Last synced at: 28 days ago - Pushed at: over 2 years ago - Stars: 13 - Forks: 0

zxjsdp/NodeFinderGUI

GUI for NodeFinder Program

Language: Python - Size: 2.78 MB - Last synced at: over 1 year ago - Pushed at: almost 9 years ago - Stars: 6 - Forks: 1

zxjsdp/NodeFinder

Tools for node related operations in phylogenetic analyses.

Language: Python - Size: 50.8 KB - Last synced at: over 1 year ago - Pushed at: over 9 years ago - Stars: 6 - Forks: 0

Stepainpy/newick-converter

simple converter

Language: C++ - Size: 4.88 KB - Last synced at: 5 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

bioinfweb/JPhyloIO

A Java library for event-based reading and writing of different phylogenetic file formats through a common interface

Language: Java - Size: 8.06 MB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

ArnoutLuinge/html-newick-tree-viewer

Language: JavaScript - Size: 41 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

zxjsdp/NodeFinderC

C implementation of NodeFinder program

Language: C - Size: 890 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

SandraKla/NewickReader

Package for reading the Newick format

Language: R - Size: 344 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

zlluGitHub/newick-tree-parser

A Newick format and tree structure parser.

Language: JavaScript - Size: 72.3 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

lindenb/newicktools

Misc tools for newick format

Language: Yacc - Size: 17.6 KB - Last synced at: over 2 years ago - Pushed at: over 8 years ago - Stars: 8 - Forks: 1

sudorook/newick-tools

Process and visualize Newick-formatted phylogenetic trees.

Language: C - Size: 88.9 KB - Last synced at: 3 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

leonardomathon/hierarchical-data-visualization-tool

This is our visualization project which was build for 2IOA0 DBL HTI + Webtech course (2017-2018) at the TU/Eindhoven.

Language: Tcl - Size: 11.2 MB - Last synced at: 10 months ago - Pushed at: about 7 years ago - Stars: 2 - Forks: 0

CiaranOMara/Newick.jl

Language: Julia - Size: 12.7 KB - Last synced at: 11 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

biocom-uib/prob-alpha

Computation of the probabilities under Ford's alpha model of spanning binary trees and shape using Sage's Python.

Language: Python - Size: 773 KB - Last synced at: over 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

hsiaoyi0504/phylocanvas_i5k

Try phylocanvas for i5k (https://hsiaoyi0504.github.io/phylocanvas_i5k/)

Language: JavaScript - Size: 30.3 KB - Last synced at: 17 days ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

qurben/libnewicktree Fork of jboot/libnewicktree

A standalone Newick tree reader in Java

Language: Java - Size: 390 KB - Last synced at: 2 months ago - Pushed at: over 10 years ago - Stars: 1 - Forks: 0