GitHub topics: ncbi
yashpandey007/csv-everything
🖼️ Convert images of tables or charts into downloadable CSV files effortlessly with the CSV Everything Chrome Extension using the OpenRouter API.
Language: HTML - Size: 1.3 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 0 - Forks: 0
ncbi/elastic-blast
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
Language: Python - Size: 1.7 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 64 - Forks: 18
CDCgov/tostadas
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Language: Python - Size: 48.7 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 28 - Forks: 15
vanheeringen-lab/genomepy
genes and genomes at your fingertips
Language: Python - Size: 11.8 MB - Last synced at: 3 days ago - Pushed at: 4 months ago - Stars: 399 - Forks: 39
pachterlab/gget
🧬 gget enables efficient querying of genomic reference databases
Language: Python - Size: 330 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 1,049 - Forks: 77
FOI-Bioinformatics/metaquest
MetaQuest is a robust and user-friendly command-line toolkit designed to simplify and streamline the analysis of metagenomic data. From summarizing the presence of specific genomes to visualizing complex datasets, MetaQuest offers an array of tools to help researchers uncover insights from their metagenomic datasets.
Language: Python - Size: 231 KB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 1 - Forks: 0
CloudtechDevops001/pubmed-authors-fetcher
A Node.js tool for extracting and analyzing author information from PubMed articles. Features include publication filtering, author affiliation tracking, and CSV report generation. Perfect for researchers and bibliometric analysis.
Language: JavaScript - Size: 20.5 KB - Last synced at: 2 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 1
hiddenblue/Pubmedsoso
A Python mini-tool for downloading free PubMed pdf 一个批量下载pubmed免费文献的python小工具
Language: Python - Size: 1.33 MB - Last synced at: 6 days ago - Pushed at: 9 months ago - Stars: 47 - Forks: 3
kblin/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
Language: Python - Size: 359 KB - Last synced at: 12 days ago - Pushed at: about 1 month ago - Stars: 1,026 - Forks: 179
ncbi/datasets
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Language: Jupyter Notebook - Size: 20.2 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 448 - Forks: 53
Vincent-Therrien/stelaro
Metagenomic toolbox / Outils de métagénomique
Language: Jupyter Notebook - Size: 8.26 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 0
shivazshu/evo2-vep
Predict the pathogenicity of DNA variants using the Evo2 deep learning model. Includes a FastAPI backend and a modern Next.js frontend for interactive variant analysis, gene exploration, and ClinVar comparison.
Language: TypeScript - Size: 487 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0
pirovc/genome_updater
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
Language: Shell - Size: 1.29 MB - Last synced at: 2 days ago - Pushed at: 9 months ago - Stars: 160 - Forks: 15
cyanheads/pubmed-mcp-server
A Model Context Protocol (MCP) server enabling AI agents to intelligently search, retrieve, and analyze biomedical literature from PubMed via NCBI E-utilities. Includes a research agent scaffold. STDIO & HTTP
Language: TypeScript - Size: 3.27 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 16 - Forks: 4
Shall-We-Dance/NCBI_sra_download
A Bash script for downloading sequencing data from the NCBI SRA database.
Language: Shell - Size: 14.6 KB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
VEuPathDB/service-multi-blast
Async BLAST+ query service and supporting libraries.
Language: Kotlin - Size: 9.24 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
dvklopfenstein/pmidcite
Download "Cited by" data from the NIH for any paper with a PubMed ID
Language: Python - Size: 20.3 MB - Last synced at: 6 days ago - Pushed at: about 1 month ago - Stars: 32 - Forks: 7
Martinaa1408/BDB
This repository contains my personal notes, slides, and notebooks for the Biomedical Data Bases (BDB-2025) course at the University of Bologna. It includes materials from both modules of the course, focusing on real-world biomedical data management using SQL, NoSQL, Python, and public APIs.
Language: Jupyter Notebook - Size: 23.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
CVUA-RRW/taxidtools
Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files
Language: Python - Size: 1.01 MB - Last synced at: 15 days ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 2
Zenleaf/entrez-rs
A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.
Language: Rust - Size: 44.9 KB - Last synced at: 22 days ago - Pushed at: over 2 years ago - Stars: 19 - Forks: 3
Robaina/GenBankpy
Tools to download, parse and filter GenBank files
Language: Python - Size: 25 MB - Last synced at: 7 days ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 1
pirovc/multitax
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
Language: Python - Size: 318 KB - Last synced at: 18 days ago - Pushed at: about 2 months ago - Stars: 45 - Forks: 5
open-genes/og-publications-search-api
Open Genes Publication Search API
Language: JavaScript - Size: 139 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 1
NavalTanker/blast-autofill
Autofills from NCBI's blastn and blastx
Language: Python - Size: 74.2 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
cemileblks/integrated-gene-db
Integrates gene annotation data from Ensembl, NCBI, UniProt, and STRING into a MySQL database using R.
Language: R - Size: 12.7 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
banhbio/Taxonomy.jl
Julia package to handle the NCBI Taxonomy database.
Language: Julia - Size: 696 KB - Last synced at: 13 days ago - Pushed at: 2 months ago - Stars: 14 - Forks: 1
andgineer/http-stream-xml
Parse HTTP response as stream, by chunks. Example for NCBI (PubMed) Entrez.
Language: Python - Size: 326 KB - Last synced at: 12 days ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0
PoisotLab/NCBITaxonomy.jl
Wrapper around the NCBI taxonomy files
Language: Julia - Size: 2.83 MB - Last synced at: 7 days ago - Pushed at: 2 months ago - Stars: 7 - Forks: 2
Lattice-Automation/seqparse
Parse sequence files (GenBank, FASTA, SnapGene, SBOL) and accession IDs (NCBI, iGEM) to a common format
Language: TypeScript - Size: 4.89 MB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 17 - Forks: 5
tmiland/Pubchem_Compound.sh
Script to retrieve compound from the pubchem database
Language: Shell - Size: 5.86 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
Edinburgh-Genome-Foundry/genome_collector
:stars: Easily download genomes and build BLAST/Bowtie indexes in Python
Language: Python - Size: 367 KB - Last synced at: about 2 months ago - Pushed at: almost 3 years ago - Stars: 22 - Forks: 0
ncbi/dbsnp
dbSNP
Language: Jupyter Notebook - Size: 9.91 MB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 137 - Forks: 50
suqingdong/pypubmed
Toolkits for NCBI Pubmed
Language: Python - Size: 332 KB - Last synced at: 3 days ago - Pushed at: 10 months ago - Stars: 29 - Forks: 8
biocommons/eutils
simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
Language: Python - Size: 2.03 MB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 62 - Forks: 27
Winnie-Hsiung/Data-organization-NCBI-KEGG-UniProt-dbCAN-GlyCosmos
Provide Python codes to handle database downloads
Language: Python - Size: 78.1 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
delveopers/EnigmaDataset
Dataset generation pipeline for Enigma2 using NCBI database
Language: Python - Size: 51.8 KB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
medvir/VirMet
Set of tools for viral metagenomics.
Language: Python - Size: 1.2 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 14 - Forks: 5
Jumitti/TFinder
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
Language: Python - Size: 60.7 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 16 - Forks: 17
Huzafa5/pubmed-mcp-server
The PubMed MCP Server provides access to biomedical literature, enhancing AI agents' capabilities. 🌟 Explore the integration of PubMed with the Model Context Protocol for efficient data retrieval. 🚀
Language: TypeScript - Size: 2.31 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
engkinandatama/NCBI-Sequence-Fetcher
NCBI Sequence Fetcher is a Python desktop app for downloading nucleotide sequences and extracting metadata from NCBI. It features an easy-to-use GUI, supports FASTA and GenBank formats, and helps researchers students and bioinformaticians efficiently collect DNA sequences and store metadata in Excel files.
Language: Python - Size: 26.4 KB - Last synced at: about 2 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
wang-q/nwr
`nwr` is a command line tool for working with NCBI taxonomy, Newick files and assembly reports
Language: Rust - Size: 20.8 MB - Last synced at: 19 days ago - Pushed at: 4 months ago - Stars: 7 - Forks: 1
EbodShojaei/sentinel
Sentinel is an AI agent that retrieves PubMed publications using phi3.5 with phidata to generate and run a MeSH search on NCBI Entrez.
Language: Python - Size: 31.3 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 3 - Forks: 0
varfish-org/clinvar-this
ClinVar Submission API Made Easy
Language: Python - Size: 1.23 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 10 - Forks: 2
IlyinVyacheslav/BioInformatics
Gene download from NCBI database, sequence alignment and clusterization, realization of different bioinformatics algorithms within ITMO 4 sem course
Language: Jupyter Notebook - Size: 14.5 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
zyxue/ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
Language: Python - Size: 395 KB - Last synced at: 4 months ago - Pushed at: 5 months ago - Stars: 145 - Forks: 30
crosenth/medirect
multiprocessed ncbi edirect
Language: Python - Size: 89.8 KB - Last synced at: 20 days ago - Pushed at: 5 months ago - Stars: 6 - Forks: 3
npanuhin/edu-JetBrains-PubTrends
Visualizing Clusters of GEO Datasets Retrieved from NCBI PubMed Publications
Language: Python - Size: 43 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
pirovc/ganon
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
Language: Python - Size: 24.2 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 96 - Forks: 12
Tom-Jenkins/AssemblyStatsViewer
Web application to fetch and compare genome assembly stats from the NCBI Datasets API
Language: JavaScript - Size: 190 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
Elliot-Chan-120/NCBI__NtDb_GenBank_Parser
Parses GenBank files from the NCBI nucleotide database using accession number and email address associated with NCBI account. Is capable of outputting a .txt file containing basic sequence information, source, CDS, and gene feature dictionaries as well as generate a linear gene map visualizing all of the aforementioned information.
Language: Python - Size: 25.4 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
Elliot-Chan-120/MyBLAST_SeqAlign
This project / toolkit parses BLAST (Basic Local Alignment Search Tool) results from a given FASTA-formatted file. BlastData produces a BLAST XML output file, parses its information and stores it into various structured file types (JSON, CSV, FASTA). These files can then be accessed by the class DataProcessor for data visualization and processing.
Language: Python - Size: 9.77 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
rcs333/VAPiD
VAPiD: Viral Annotation and Identification Pipeline
Language: Shell - Size: 18 MB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 52 - Forks: 15
nali321/Sequence2Branches
Sequence2Branches: Creating a species-level phylogenetic tree from paired FASTQ reads
Language: Python - Size: 81.1 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
Michael-Sebero/Genetic-Trait-Detector
This python script detects known traits in raw human genetic data.
Language: Python - Size: 86.9 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 33 - Forks: 2
CCB-SB/plsdb
PLSDB pipeline to collect bacterial plasmids from NCBI
Language: Python - Size: 13.3 MB - Last synced at: 30 days ago - Pushed at: 11 months ago - Stars: 38 - Forks: 4
kullrich/taxadb2
local query the ncbi taxonomy
Language: Python - Size: 1.57 MB - Last synced at: 12 days ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
tracywong117/NCBI-get-all-children-organism-under-ancestor
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
Language: Python - Size: 10.7 KB - Last synced at: 2 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
soraiasilva13/Gene_HBB_Research
Research about HBB gene for the Bioinformatics Laboratories class. Second Semester of the First Year of the Bachelor's Degree in Bioinformatics at FCUP.
Size: 0 Bytes - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
datasnakes/OrthoEvolution
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Language: Python - Size: 40.6 MB - Last synced at: 3 days ago - Pushed at: about 2 months ago - Stars: 28 - Forks: 4
dhimmel/pubmedpy
Utilities for interacting with NCBI EUtilities relating to PubMed
Language: Python - Size: 209 KB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 11 - Forks: 2
mirumirumo/ncbi-fetch
ncbi-cli is a tool to connect to NCBI' s ftp server and get some info about genomes you specify.
Language: Go - Size: 45.9 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
MuteJester/PyNCBI
A Python API library for exploration and data retrieval from NCBI
Language: Python - Size: 4.22 MB - Last synced at: 17 days ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 3
pmenzel/download-refseq-genomes
Perl script to download genomes within a clade from NCBI Refseq
Language: Perl - Size: 13.7 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 5 - Forks: 1
ankushgpta2/tostadas Fork of CDCgov/tostadas
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Language: Python - Size: 1.36 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
biocommons/mirrors-ncbi
Makefile (of all things) to space-efficiently mirror selected NCBI resources
Language: Makefile - Size: 11.7 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 1
arcones/sra-collector
Collect NIH NCBI SRA metadata of several GEO studies in one search
Language: Python - Size: 65.5 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
audy/ncbi-taxonomy-bot
Bot that toots when NCBI updates their taxonomy database
Language: Python - Size: 37.1 KB - Last synced at: 5 months ago - Pushed at: 9 months ago - Stars: 5 - Forks: 0
suqingdong/pubmed2
NCBI PubMed Crawler
Language: Python - Size: 2.27 MB - Last synced at: 22 days ago - Pushed at: over 4 years ago - Stars: 6 - Forks: 5
maurya-anand/sra-annotator
A command-line tool for retrieving annotations from the NCBI SRA.
Language: Python - Size: 64.5 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
neksa/mutagene
Python library and package for mutational analysis
Language: Jupyter Notebook - Size: 27.7 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 3 - Forks: 3
pwilmart/fasta_utilities
Utilities for downloading and managing protein FASTA files.
Language: Python - Size: 11.5 MB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 13 - Forks: 7
AhmedElsherbini/Locustags_fetcher
Download locus tags from a list
Language: Python - Size: 3.91 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
VascoElbrecht/PrimerMiner
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
Language: R - Size: 5.02 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 33 - Forks: 11
gabrielramirezv/BioPython
Repository for BioPython class, belonging to the Undergraduate Program in Genomic Sciences, UNAM.
Language: Python - Size: 445 KB - Last synced at: 16 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
CNuge/go-fasta
A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format
Language: Go - Size: 4.38 MB - Last synced at: 23 days ago - Pushed at: almost 7 years ago - Stars: 4 - Forks: 1
eric9n/ncbi_dl
A command-line tool for downloading and managing NCBI genome data
Language: Rust - Size: 79.1 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
codecreatede/ena-api-access
api for accessing links for downloading genomes from european nucleotide archive
Language: Shell - Size: 2.93 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
RicoLeiser/EZNCBIdownloader
Python-based tool to easily bulk download bacteria genomes from NCBI
Language: Python - Size: 54.7 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
nabschriefer/SampleMiner
Python app for mining samples from datasets downloaded as csv files
Language: Python - Size: 129 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
sethcg/NCBI-Gene-Finder
This is a desktop app. It takes protein accession numbers from a spreadsheet and gets the related NCBI gene information.
Language: TypeScript - Size: 111 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
ycya88/ncbi_edirect
NCBI edirect docker images.
Language: Dockerfile - Size: 17.6 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
enviro-lab/ncbi-submit
A tool to prepare files and run/monitor programmatic submissions to NCBI
Language: Python - Size: 549 KB - Last synced at: about 3 hours ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0
j-i-l/GenBankParser
Parser (unofficial) for ncbi GenBank data
Language: Python - Size: 208 KB - Last synced at: 16 days ago - Pushed at: almost 6 years ago - Stars: 7 - Forks: 3
asadprodhan/A-Guide-to-Automatically-Downloading-NCBI-SRA-Reads
A Guide to Automatically Downloading NCBI SRA Reads
Language: Shell - Size: 637 KB - Last synced at: 2 days ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
NCBI-Hackathons/FlowBio
A fast, easy way to present complex bioinformatics pipelines to biologists
Language: Shell - Size: 210 MB - Last synced at: 10 months ago - Pushed at: almost 7 years ago - Stars: 11 - Forks: 6
maximilianh/multiSub
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
Language: Python - Size: 1020 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 35 - Forks: 2
widdowquinn/ncfp
Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.
Language: Python - Size: 548 KB - Last synced at: 21 days ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 2
sreejithdotme/VariantSearchPy
Python Clinical Variant Tools This repository hosts Python scripts designed to streamline the retrieval of clinical variant information from authoritative sources such as ClinVar and DisGeNET. These tools facilitate efficient data extraction and analysis for researchers and professionals in the field of genetics and genomics.
Language: Python - Size: 572 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
metamaden/gdc_download_tools
Directions and code for generic GDC data downloads.
Size: 3.23 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
metamaden/seq_answers
Sequencing data preprocessing
Language: R - Size: 1.44 MB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0
abdelhak-zaaim/BioBlastAutomation
bioBlastAutomation is a Python-based project designed to automate the process of performing BLAST search .
Language: CSS - Size: 870 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
tracywong117/AutoSuggest-words
With Tkinter GUI. Provides autocomplete suggestions for organism names from a SQLite database, using Levenshtein distance for string matching.
Language: Python - Size: 55.7 KB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
rohitsuratekar/CardioPipeLine
Pipeline for RNA-seq analysis
Language: Python - Size: 208 KB - Last synced at: 10 months ago - Pushed at: almost 5 years ago - Stars: 8 - Forks: 0
vaibhavvikas/fasta-sequence-retrieval
Python Project to extract the amino acid sequences using the nucleotides accession numbers retrieved from the NCBI.
Language: Python - Size: 7.37 MB - Last synced at: 3 months ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 1
YogiOnBioinformatics/Molecular-Phylogenomics-Using-Mega-X
Examples of Molecular Phylogenomics figures created from self-taught usage of MEGA-X software.
Size: 119 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
YogiOnBioinformatics/BLAST-Biopython-Challenge
Challenge to efficiently BLAST files (FASTA file & quality scores) and report key metrics about FASTA back to user.
Language: Python - Size: 10.8 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
MoultDB/taxonbridge
R package to merge the NCBI taxonomy and the GBIF backbone taxonomy
Language: R - Size: 4.25 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 1
AcademixBio/mesh-term-massager
Turn MeSH-terms xml into tabular format
Language: Jupyter Notebook - Size: 29.3 KB - Last synced at: about 1 month ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 1
NCBI-Hackathons/phenotypeXpression
Subclassification of disease states based on the intersection of literature and expression
Language: Python - Size: 14.6 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 12 - Forks: 3
NCBI-Hackathons/CustomBLAST
Split BLAST Databases in Cloud Infrastructure
Size: 1000 Bytes - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0