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GitHub / vanheeringen-lab / genomepy
genes and genomes at your fingertips
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vanheeringen-lab%2Fgenomepy
Stars: 363
Forks: 36
Open Issues: 15
License: mit
Language: Python
Repo Size: 11.1 MB
Dependencies:
38
Created: over 7 years ago
Updated: about 16 hours ago
Last pushed: 6 months ago
Last synced: about 16 hours ago
Commit Stats
Commits: 611
Authors: 11
Mean commits per author: 55.55
Development Distribution Score: 0.53
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/vanheeringen-lab/genomepy
Topics: bioconda, ensembl, genome, ncbi, python, ucsc
Files
Dependencies
- appdirs
- autoflake 1.4.*
- biopython >=1.73
- black 21.5b2.*
- bowtie2
- bwa
- click
- colorama
- diskcache
- flake8 3.9.2.*
- flake8-bugbear 21.4.3.*
- gmap
- hisat2
- isort 5.9.1.*
- loguru
- minimap2
- mygene
- mysql-connector-python
- norns >=0.1.5
- numpy
- pandas
- pre-commit
- pyfaidx >=0.5.7
- pytest
- pytest-cov
- pytest-rerunfailures
- requests
- setuptools
- star
- tabix
- tqdm >=4.51
- ucsc-bedtogenepred
- ucsc-genepredtobed
- ucsc-genepredtogtf
- ucsc-gff3togenepred
- ucsc-gtftogenepred
- JamesIves/github-pages-deploy-action v4 composite
- actions/checkout v3 composite