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GitHub / pirovc / ganon
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pirovc%2Fganon
Stars: 76
Forks: 12
Open Issues: 2
License: mit
Language: Python
Repo Size: 24.2 MB
Dependencies:
0
Created: almost 6 years ago
Updated: 4 months ago
Last pushed: 4 months ago
Last synced: 4 months ago
Topics: bioinformatics, bloom-filter, genbank, gtdb, k-mer, metagenomics, microbiome, minimizers, ncbi, refseq, taxonomy