Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: reads

Repositories

sharkLoc/fqkit

🦀 Fqkit: A simple and cross-platform program for fastq file manipulation

Language: Rust - Size: 724 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 1

robiwangriff/ENA-submission-in-R

R functions and workflow for submitting amplicon sequence data to the ENA.

Language: R - Size: 246 KB - Last synced: 29 days ago - Pushed: 30 days ago - Stars: 1 - Forks: 1

lvn3668/naivevariantcaller_ECGR_variantdetection

Python code to detect ECGR Mutations; Takes a reference genome and bunch of reads as input and finds mutations (1-3 bp length) where number of supporting reads greater than 5

Language: Python - Size: 2.39 MB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, per tile sequence quality

Language: Python - Size: 12.7 KB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 3 - Forks: 1

morispi/CONSENT

Scalable long read self-correction and assembly polishing with multiple sequence alignment

Language: C++ - Size: 15.9 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 53 - Forks: 4

yankeexe/nepali-devblogs

Collection of blogs/publications by Nepali devs.

Size: 44.9 KB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 33 - Forks: 9

morispi/HG-CoLoR

Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads

Language: C++ - Size: 7.61 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 9 - Forks: 3

apeltzer/ClipAndMerge

The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.

Language: Java - Size: 251 KB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1

pageauc/webserver

A Raspberry Pi Simple python Stand Alone Local Network Web Server. Automatically reads folder and file entries into a right pane selection list. Selected folder opens a new browser tab and Selected file displays content in browser left pane iframe. Right pane list can be ordered by date/time or alphabetic ascending or descending via settings.py file. A menubox.sh makes it easier to operate and change the webserver settings.

Language: Python - Size: 1.75 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 12 - Forks: 3

morispi/LRez

Standalone tool and library allowing to work with barcoded linked-reads

Language: C++ - Size: 2.13 MB - Last synced: 1 day ago - Pushed: 10 months ago - Stars: 12 - Forks: 4

Divinemonk/notes-for-hackers

Study material (pdfs, notes, free course download links etc) for HACKERS

Size: 530 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 4 - Forks: 0

maxibor/adrsm

Ancient DNA Read Simulator for Metagenomic

Language: HTML - Size: 14.7 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 5 - Forks: 1

anton083/ReadForge.jl

This will mainly be a small and niche Julia package that I need for benchmarking ReadSniper.jl. It has also served as good practice for getting familiar with the good practices of Julia package development.

Language: Julia - Size: 145 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0