GitHub topics: reads

Repositories

BioinfoToolbox/fqkit

🦀 Fqkit: A simple and cross-platform program for fastq file manipulation

Language: Rust - Size: 976 KB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 5 - Forks: 3

A well-organized personal digital bookshelf 📚 featuring curated book's PDFs 📘 across genres — from thought-provoking nonfiction 🤔 to captivating stories ✨ and learning resources 🎓. Accessible anytime, anywhere 🌐 — for whenever you just want to read it out 🔊.

Size: 14.4 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

Divinemonk/notes-for-hackers

Study material (pdfs, notes, free course download links etc) for HACKERS

Size: 530 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 17 - Forks: 1

pageauc/webserver

A Raspberry Pi Simple python Stand Alone Local Network Web Server. Automatically reads folder and file entries into a right pane selection list. Selected folder opens a new browser tab and Selected file displays content in browser left pane iframe. Right pane list can be ordered by date/time or alphabetic ascending or descending via settings.py file. A menubox.sh makes it easier to operate and change the webserver settings.

Language: Python - Size: 1.75 MB - Last synced at: about 2 months ago - Pushed at: over 4 years ago - Stars: 13 - Forks: 3

DKFZ-ODCF/FastqIndEx

A tool to index and extract data from gzipped FASTQ files

Language: C++ - Size: 3.75 MB - Last synced at: 4 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1

apeltzer/ClipAndMerge

The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.

Language: Java - Size: 263 KB - Last synced at: 3 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 2

kashiff007/RNA-seq-Pipeline-Under-Construction-

Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.

Language: Shell - Size: 146 KB - Last synced at: 10 months ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

asadprodhan/A-Guide-to-Automatically-Downloading-NCBI-SRA-Reads

A Guide to Automatically Downloading NCBI SRA Reads

Language: Shell - Size: 637 KB - Last synced at: about 2 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

robiwangriff/ENA-submission-in-R

R functions and workflow for submitting amplicon sequence data to the ENA.

Language: R - Size: 246 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

lvn3668/naivevariantcaller_ECGR_variantdetection

Python code to detect ECGR Mutations; Takes a reference genome and bunch of reads as input and finds mutations (1-3 bp length) where number of supporting reads greater than 5

Language: Python - Size: 2.39 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

lvn3668/fastqcparser

Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, per tile sequence quality

Language: Python - Size: 12.7 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 1

morispi/CONSENT

Scalable long read self-correction and assembly polishing with multiple sequence alignment

Language: C++ - Size: 15.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 53 - Forks: 4

yankeexe/nepali-devblogs

Collection of blogs/publications by Nepali devs.

Size: 44.9 KB - Last synced at: 21 days ago - Pushed at: about 2 years ago - Stars: 33 - Forks: 9

morispi/HG-CoLoR

Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads

Language: C++ - Size: 7.61 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 9 - Forks: 3

morispi/LRez

Standalone tool and library allowing to work with barcoded linked-reads

Language: C++ - Size: 2.13 MB - Last synced at: 10 months ago - Pushed at: almost 2 years ago - Stars: 12 - Forks: 4

maxibor/adrsm

Ancient DNA Read Simulator for Metagenomic

Language: HTML - Size: 14.7 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 1

anton083/ReadForge.jl

This will mainly be a small and niche Julia package that I need for benchmarking ReadSniper.jl. It has also served as good practice for getting familiar with the good practices of Julia package development.

Language: Julia - Size: 145 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0