GitHub topics: linked-reads
pdimens/mimick
Linked-read sequence simulator
Language: Python - Size: 13.2 MB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 0
pdimens/harpy
Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
Language: Python - Size: 468 MB - Last synced at: 5 days ago - Pushed at: 7 days ago - Stars: 16 - Forks: 2
bcgsc/tigmint
⛓ Correct misassemblies using linked AND long reads
Language: Python - Size: 20.9 MB - Last synced at: 20 days ago - Pushed at: over 1 year ago - Stars: 60 - Forks: 13
pontushojer/awesome-linked-reads
Collection of tools and resources for linked-reads
Size: 47.9 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 11 - Forks: 4
parklab/xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Language: Python - Size: 7.8 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 108 - Forks: 23
RolandFaure/QuickDeconvolution
A software providing reference-free barcode deconvolution for linked reads data
Language: C++ - Size: 7.93 MB - Last synced at: 10 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0
bcgsc/physlr
:chains: Construct a Physical Map from Linked Reads
Language: Python - Size: 2.17 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 18 - Forks: 8
bioinfologics/Pseudoseq.jl
Fake genomes, fake sequencing, real insights.
Language: Julia - Size: 7.25 MB - Last synced at: 8 months ago - Pushed at: almost 4 years ago - Stars: 13 - Forks: 3
nf-core/neutronstar 📦
De novo assembly pipeline for 10X linked-reads using Supernova
Language: Nextflow - Size: 71.3 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 5
morispi/LEVIATHAN
Linked-reads based structural variant caller with barcode indexing
Language: C++ - Size: 49.9 MB - Last synced at: 10 months ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 2
morispi/LRez
Standalone tool and library allowing to work with barcoded linked-reads
Language: C++ - Size: 2.13 MB - Last synced at: 10 months ago - Pushed at: almost 2 years ago - Stars: 12 - Forks: 4
anne-gcd/MTG-Link
MTG-Link: Local assembly tool for linked-read data
Language: Python - Size: 50.1 MB - Last synced at: 10 months ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 1
bcgsc/chromeqc
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
Language: HTML - Size: 1.98 MB - Last synced at: 10 months ago - Pushed at: about 6 years ago - Stars: 15 - Forks: 3
sjackman/tigmint-slides
Tigmint: Correct Misassemblies Using Linked Reads From Large Molecules
Language: JavaScript - Size: 15.1 MB - Last synced at: 3 months ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
sjackman/tigmint-paper
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Language: TeX - Size: 10.7 MB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
sjackman/tigmint-data
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Language: Makefile - Size: 110 KB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0