kcleal/dysgu

Toolkit for calling structural variants using short or long reads

Language: Cython - Size: 46.3 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 85 - Forks: 10

Gabaldonlab/redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Language: C++ - Size: 63.7 MB - Last synced: 21 days ago - Pushed: 5 months ago - Stars: 123 - Forks: 19

jalwillcox/Get-STR-Extensions

This script takes advantage of read pairing in bam/cram files to identify the presence of STR extensions.

Language: Shell - Size: 137 KB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

cihga39871/Atria

An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.

Language: Julia - Size: 1.87 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 30 - Forks: 3

bioinfologics/Pseudoseq.jl

Fake genomes, fake sequencing, real insights.

Language: Julia - Size: 7.25 MB - Last synced: 8 days ago - Pushed: over 2 years ago - Stars: 13 - Forks: 3

quadram-institute-bioscience/seqfu 📦

Legacy repository (https://telatin.github.io/seqfu2)

Size: 2.28 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

CVUA-RRW/MetaSeqSim

Simulator of metabarcoding sequencing runs - Glorified ART wrapper

Language: Python - Size: 11.7 KB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

GenomicaMicrob/nextera_cleaner

Script to clean Illumina pair-end sequences produced with the Nextera kit. Bases below Q30, Ns, and Nextera adapters are removed. Bases can also be removed at the beginning and end of each sequence. At the end, clean files can be analyzed with FastQC.

Language: Shell - Size: 16.6 KB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 2

Shians/paired_fastq_split

Language: Python - Size: 4.88 KB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

alexjisa/TAIFA

TAIFA is a workflow for conducting Whole-Genome Sequencing (WGS) of bacteria

Size: 13.4 MB - Last synced: 5 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

Pinky-cloud224/snakemake_workflow_rna_seq_data_analysis

Language: Jupyter Notebook - Size: 975 KB - Last synced: 5 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

telatin/porfast

⚡pORFast - Paired-end ORF Fast extraction

Language: Nim - Size: 9.14 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 6 - Forks: 0

crickbabs/BABS-MNASeqPE 📦

This pipeline has been superceeded. Please use >>>

Language: Groovy - Size: 1.38 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

quadram-institute-bioscience/interleafq 📦

📦 Interleave and deinterleave FASTQ files. Streams and gzipped FASTQ files are accepted.

Language: Perl - Size: 2.01 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

sestaton/Pairfq

Sync paired-end FASTA/Q files and keep singleton reads

Language: Perl - Size: 6.12 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 18 - Forks: 6

OpenGene/pecheck

check paired-end FASTQ data integrity

Language: C - Size: 83 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 6 - Forks: 2

Shao-Group/rnabridge-align

rnabridge-align is an efficient tool to bridge paired-end RNA-seq reads

Language: C++ - Size: 182 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 5 - Forks: 1

gdefazio/SplitFastq

It splits a fastq file containing R1 and R2 reads.

Language: C - Size: 1.95 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

crickbabs/BABS-ATACSeqPE

This pipeline has been superceeded. Please use >>>

Language: Groovy - Size: 5.05 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0