GitHub topics: paired-end
kcleal/dysgu
Toolkit for calling structural variants using short or long reads
Language: Cython - Size: 46.6 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 104 - Forks: 13
Gabaldonlab/redundans
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Language: C++ - Size: 63.7 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 149 - Forks: 20
cihga39871/Atria
An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
Language: Julia - Size: 2.02 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 34 - Forks: 3
jalwillcox/Get-STR-Extensions
This script takes advantage of read pairing in bam/cram files to identify the presence of STR extensions.
Language: Shell - Size: 137 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
bioinfologics/Pseudoseq.jl
Fake genomes, fake sequencing, real insights.
Language: Julia - Size: 7.25 MB - Last synced at: 4 days ago - Pushed at: almost 4 years ago - Stars: 13 - Forks: 3
quadram-institute-bioscience/seqfu 📦
Legacy repository (https://telatin.github.io/seqfu2)
Size: 2.28 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0
CVUA-RRW/MetaSeqSim
Simulator of metabarcoding sequencing runs - Glorified ART wrapper
Language: Python - Size: 11.7 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
GenomicaMicrob/nextera_cleaner
Script to clean Illumina pair-end sequences produced with the Nextera kit. Bases below Q30, Ns, and Nextera adapters are removed. Bases can also be removed at the beginning and end of each sequence. At the end, clean files can be analyzed with FastQC.
Language: Shell - Size: 16.6 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 2
Shians/paired_fastq_split
Language: Python - Size: 4.88 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0
alexjisa/TAIFA
TAIFA is a workflow for conducting Whole-Genome Sequencing (WGS) of bacteria
Size: 13.4 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0
Pinky-cloud224/snakemake_workflow_rna_seq_data_analysis
Language: Jupyter Notebook - Size: 975 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
telatin/porfast
âš¡pORFast - Paired-end ORF Fast extraction
Language: Nim - Size: 9.14 MB - Last synced at: 4 months ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 0
crickbabs/BABS-MNASeqPE 📦
This pipeline has been superceeded. Please use >>>
Language: Groovy - Size: 1.38 MB - Last synced at: over 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
quadram-institute-bioscience/interleafq 📦
📦 Interleave and deinterleave FASTQ files. Streams and gzipped FASTQ files are accepted.
Language: Perl - Size: 2.01 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
sestaton/Pairfq
Sync paired-end FASTA/Q files and keep singleton reads
Language: Perl - Size: 6.12 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 18 - Forks: 6
OpenGene/pecheck
check paired-end FASTQ data integrity
Language: C - Size: 83 KB - Last synced at: 3 months ago - Pushed at: almost 7 years ago - Stars: 6 - Forks: 3
Shao-Group/rnabridge-align
rnabridge-align is an efficient tool to bridge paired-end RNA-seq reads
Language: C++ - Size: 182 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 5 - Forks: 1
gdefazio/SplitFastq
It splits a fastq file containing R1 and R2 reads.
Language: C - Size: 1.95 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
crickbabs/BABS-ATACSeqPE
This pipeline has been superceeded. Please use >>>
Language: Groovy - Size: 5.05 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0