GitHub topics: featurecounts
LeoooJR/ReproHackathon
A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.
Language: R - Size: 158 KB - Last synced at: 3 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
bixBeta/atac
nextflow ATACseq pipeline for GG02
Language: Nextflow - Size: 399 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
monnieb92/PROseq_Intron_Intergenic_Enhancers
A pipeline to call intron and intergenic eRNAs from PRO-seq Data
Language: Shell - Size: 35.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
hanielcedraz/BAQCOM
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
Language: R - Size: 102 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 7 - Forks: 1
vivekbhr/Subread_to_DEXSeq
Scripts to import your FeatureCounts output into DEXSeq
Language: Python - Size: 937 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 27 - Forks: 19
Pinky-cloud224/snakemake_workflow_rna_seq_data_analysis
Language: Jupyter Notebook - Size: 975 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
bpucker/RNA-Seq_analysis
scripts for RNA-Seq analysis
Language: Python - Size: 89.8 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 16 - Forks: 8
mattgalbraith/subread-docker-singularity
Build Docker container for Subread package and (optionally) convert to Apptainer/Singularity.
Language: Dockerfile - Size: 4.88 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
rnnh/bioinfo-notebook
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Language: Shell - Size: 1010 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 77 - Forks: 29
furkanmtorun/rna-seq-workflow 📦
🛠under active development | RNA-Seq Workflow in Jupyter Notebook
Language: Jupyter Notebook - Size: 30.3 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 1
hernanmd/hisat2_bovine
Scripts to index and align Bovine genome with HISAT2
Language: Shell - Size: 13.3 MB - Last synced at: 3 months ago - Pushed at: about 7 years ago - Stars: 1 - Forks: 1
uhh-lt/lefex
A tool for extraction of lexical features from text based on UIMA and MapReduce
Language: Java - Size: 342 KB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 4 - Forks: 0
