GitHub topics: bowtie

Repositories

Juke34/AliNe

Nextflow Alignment Pipeline - from fastq.gz to sorted bam with ease

Language: Nextflow - Size: 13.2 MB - Last synced at: 6 days ago - Pushed at: 15 days ago - Stars: 17 - Forks: 3

crisprVerse/Tutorials

Tutorials for the crisprVerse

Language: TeX - Size: 5.12 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 10 - Forks: 0

A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.

Language: R - Size: 158 KB - Last synced at: 3 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

StevenWingett/FastQ-Screen

Detecting contamination in NGS data and multi-species analysis

Language: HTML - Size: 1.97 MB - Last synced at: 6 months ago - Pushed at: 7 months ago - Stars: 67 - Forks: 16

crisprVerse/crisprBowtie

Bowtie-based alignment of CRISPR gRNA spacer sequences

Language: R - Size: 422 KB - Last synced at: 12 days ago - Pushed at: 7 months ago - Stars: 3 - Forks: 0

DonQwerty/Genome-Aligners

This repository contains my end-of-degree project. I've implemented a simple version of three of the most known aligners like Bowtie, BWA and BWT-SM

Language: C++ - Size: 3.75 MB - Last synced at: 10 months ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0

cyschneck/Expanded-Smith-Waterman-Alignment

Expanded version of the traditional Smith Waterman algorithm for local alignment

Language: Python - Size: 457 KB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

mahozad/graph-analysis

The project for the course "Web Information Retrieval"

Language: Kotlin - Size: 1.89 MB - Last synced at: about 2 months ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

pjtorres/metagenomics_tutorial

Analyzing shotgun data

Language: HTML - Size: 34.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 2

modupeore/VAP

VAP : For Reference mapping and Variant detection.

Language: Perl - Size: 21.5 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 4

dgavr/Zebrafish_mappability

Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes

Language: Python - Size: 4.88 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

chanzhou/AutoCirc

A computational toolkit of fast and automatical identification of back-splice junctions of potential circular RNAs (circRNAs) from RNA-seq data.

Language: Perl - Size: 15 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 4

Edinburgh-Genome-Foundry/genome_collector

:stars: Easily download genomes and build BLAST/Bowtie indexes in Python

Language: Python - Size: 367 KB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 21 - Forks: 0

t-makaro/TinkerTie

Code designed to run on Atom Computer's Tinker Tie. http://atomcomputer.us/tinkertie/

Language: C - Size: 30.3 KB - Last synced at: about 2 months ago - Pushed at: about 8 years ago - Stars: 1 - Forks: 0

GeoRouv/chip-seq-analysis-replication

🔬 A replication of ChiP-Seq analysis from an experiment regarding gene induction and repression during terminal erythropoiesis that are mediated by distinct epigenetic changes

Language: Shell - Size: 1.54 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0