GitHub topics: grna-sequence
crisprVerse/crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
Language: R - Size: 5.93 MB - Last synced at: 3 days ago - Pushed at: 3 months ago - Stars: 23 - Forks: 5
Adelia567/Crispr
Crispr is a web app that simplifies the design and analysis of CRISPR guide RNAs, making it accessible for everyone. 🧬 With features like off-target scanning and AI reporting, users can quickly generate and evaluate their gRNA options. 🐙
Language: Python - Size: 158 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0
crisprVerse/crisprScore
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
Language: Python - Size: 80.8 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 20 - Forks: 4
crisprVerse/crisprViz
Visualization of CRISPR guide RNAs (gRNAs)
Language: R - Size: 1.02 MB - Last synced at: 20 days ago - Pushed at: about 1 year ago - Stars: 9 - Forks: 0
kris96tian/CRISPR_app
The CRISPR gRNA Tool is a web application to identify potential guide RNA (gRNA) target sites within a given DNA sequence.
Language: HTML - Size: 26.4 KB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
crisprVerse/crisprVerse
Collection of R packages that work in harmony for CRISPR gRNA design
Language: R - Size: 45.9 KB - Last synced at: 1 day ago - Pushed at: over 2 years ago - Stars: 13 - Forks: 0
crisprVerse/Tutorials
Tutorials for the crisprVerse
Language: TeX - Size: 5.12 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 10 - Forks: 0
crisprVerse/crisprBowtie
Bowtie-based alignment of CRISPR gRNA spacer sequences
Language: R - Size: 422 KB - Last synced at: about 1 month ago - Pushed at: 8 months ago - Stars: 3 - Forks: 0
crisprVerse/crisprBase
Base functions and classes for CRISPR gRNA design
Language: R - Size: 3.25 MB - Last synced at: 20 days ago - Pushed at: 11 months ago - Stars: 5 - Forks: 0
AlexJSully/SciGrade
SciGrade is an online web-tool that allows students (or any user with access) to mark and assist in gRNA+Primer generation.
Language: JavaScript - Size: 13 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 1
bmds-lab/Crackling-phased Fork of bmds-lab/Crackling
*HaploCrackling* -- The Crackling-based method for variant-aware, whole-genome CRISPR-Cas9 target detection
Language: C++ - Size: 295 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bretonics/CHOMP
Search guide-RNA sequences given a genome or gene sequence
Language: Perl - Size: 200 KB - Last synced at: 21 days ago - Pushed at: about 8 years ago - Stars: 4 - Forks: 1
crisprVerse/crisprDesignData
Useful human and mouse data for the crisprVerse ecosystem
Language: R - Size: 214 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 4 - Forks: 0
crisprVerse/crisprBwa
BWA-based alignment of CRISPR gRNA spacer sequences
Language: R - Size: 105 KB - Last synced at: 10 days ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0
crisprVerse/crisprScoreData
Pre-trained models for the crisprScore package
Language: R - Size: 5.74 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
amatur/CRISPR-nRef-gRNA-Design
Language: Shell - Size: 43.9 KB - Last synced at: about 2 years ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0
