Lua-Matlab-Python-R-J2EE/dce-mri-matlab

General utility functions written in MATLAB as part of a software toolkit for analyzing dynamic contrast-enhanced magnetic resonance imaging (dce-mri) data.

Language: MATLAB - Size: 1.77 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 0 - Forks: 0

aphalo/photobiology

Package ‘photobiology’ defines a system of classes for storing spectral data and accompanying methods and operators. This is the core of a suite of R packages for photobiological calculations.

Language: HTML - Size: 72 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 5 - Forks: 2

pinellolab/CRISPResso2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Language: Python - Size: 3.14 MB - Last synced at: about 18 hours ago - Pushed at: about 19 hours ago - Stars: 302 - Forks: 103

mchevalier2/crestr

A R package to apply the climate reconstruction CREST.

Language: R - Size: 148 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 11 - Forks: 0

microsoft/PullRequestQuantifier

A highly customizable framework to quantify a pull request within a repository context.

Language: C# - Size: 4.77 MB - Last synced at: 2 days ago - Pushed at: 5 days ago - Stars: 60 - Forks: 38

sourceduty/Math_Tools

Original math functions, parsing and tools developed by Sourceduty.

Language: Python - Size: 2.96 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

COMBINE-lab/alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

Language: Rust - Size: 3.95 MB - Last synced at: 8 days ago - Pushed at: 16 days ago - Stars: 183 - Forks: 16

MannLabs/directlfq

Fast and accurate label-free quantification for small and very large numbers of proteomes

Language: Jupyter Notebook - Size: 176 MB - Last synced at: 13 days ago - Pushed at: about 2 months ago - Stars: 55 - Forks: 6

songjian/cnstats

获取中国国家统计局网站数据。

Language: Python - Size: 39.1 KB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 82 - Forks: 15

Aegis1863/LLMs-Distillation-Quantification

Repo of "Quantification of Large Language Model Distillation"

Language: Python - Size: 44.8 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 83 - Forks: 7

Cai-Lab-at-University-of-Michigan/nGauge

A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.

Language: Jupyter Notebook - Size: 15 MB - Last synced at: 14 days ago - Pushed at: 5 months ago - Stars: 7 - Forks: 1

MannLabs/alphaquant

An open-source Python package for accurate and sensitive peptide and protein quantification.

Language: Python - Size: 595 MB - Last synced at: 11 days ago - Pushed at: 3 months ago - Stars: 17 - Forks: 1

DIPlib/diplib

Quantitative Image Analysis in C++, MATLAB and Python

Language: C++ - Size: 30 MB - Last synced at: 16 days ago - Pushed at: 3 months ago - Stars: 243 - Forks: 54

KomeijiForce/Active_Passive_Constraint_Koishiday_2024

[NeurIPS 2024] An advanced persona-driven role-playing system with global faithfulness quantification and optimization. In memory of the Koishi's Day of 2024.

Language: Python - Size: 5.13 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 8 - Forks: 1

COMBINE-lab/salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Language: C++ - Size: 209 MB - Last synced at: 27 days ago - Pushed at: about 1 year ago - Stars: 804 - Forks: 167

HawkMRS/pyAMARES

pyAMARES, an Open-Source Python Library for Fitting Magnetic Resonance Spectroscopy Data

Language: Python - Size: 9.07 MB - Last synced at: 1 day ago - Pushed at: 30 days ago - Stars: 5 - Forks: 1

bigbio/ibaqpy

Absolute quantification package based on quantms.io

Language: HTML - Size: 227 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 14 - Forks: 11

erdogant/KNRscore

KNRScore is a Python package for computing K-Nearest-Rank Similarity, a metric that quantifies local structural similarity between two maps or embeddings.

Language: Python - Size: 15.3 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 1

shm-unesp/DATASET_PLATEUN01

CONCEPT is a dataset of lamb-wave measured in composite structures in healthy and damaged states. This experiment was conducted at the SHM Lab from UNESP Ilha Solteira.

Language: Jupyter Notebook - Size: 15.6 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 25 - Forks: 5

PavlidisLab/rnaseq-pipeline

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Language: Shell - Size: 43.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 24 - Forks: 5

rajewsky-lab/mirdeep2

Discovering known and novel miRNAs from small RNA sequencing data

Language: Perl - Size: 7.44 MB - Last synced at: 6 days ago - Pushed at: 9 months ago - Stars: 147 - Forks: 49

luizfernandolj/mlquantify

A Python Quantification Library

Language: Python - Size: 42.5 MB - Last synced at: 27 days ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0

nf-core/dualrnaseq

Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.

Language: Nextflow - Size: 45 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 22 - Forks: 36

cpanse/protViz

Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Language: R - Size: 2.42 MB - Last synced at: 12 days ago - Pushed at: 2 months ago - Stars: 11 - Forks: 3

lambda-science/MyoQuant

MyoQuant🔬: a tool to automatically quantify pathological features in muscle fiber histology images. Demo version deployed at: https://lbgi.fr/MyoQuant

Language: Python - Size: 3.9 MB - Last synced at: 5 days ago - Pushed at: 2 months ago - Stars: 3 - Forks: 1

HLT-ISTI/QuaPy

A framework for Quantification written in Python

Language: Python - Size: 9.11 MB - Last synced at: 30 days ago - Pushed at: 6 months ago - Stars: 63 - Forks: 16

SBCSnicholsLab/pseudogene_quantification

Repo accompanying our manuscript on quantifying extra-nuclear inserts from population-level low-pass sequencing data

Language: Shell - Size: 69.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0

Hammerling-Research-Group/dlq

Production code for DLQ Algorithm

Language: R - Size: 22.6 MB - Last synced at: 21 days ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0

yufongpeng/ChemistryQuantitativeAnalysis.jl

Quantitative analysis of chemicals

Language: Julia - Size: 640 KB - Last synced at: 26 days ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

Hammerling-Research-Group/dlq_py

Production code for the Python implementation of the DLQ algorithm

Language: Python - Size: 14 MB - Last synced at: 21 days ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

smith-chem-wisc/FlashLFQ

Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics

Language: C# - Size: 12.3 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 20 - Forks: 15

zfyuan/EpiProfile2.0_Family

EpiProfile 2.0: A Computational Platform for Processing Epi-Proteomics Mass Spectrometry Data

Language: MATLAB - Size: 40.6 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 4 - Forks: 0

ivancarras/color-quantification-firefly-algorithm

Color quantification| reduction using firefly algorithm

Language: C - Size: 19.5 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 4 - Forks: 0

SilMon/NucDetect

Python interface to detect and quantify intranuclear proteins

Language: Python - Size: 71.1 MB - Last synced at: 22 days ago - Pushed at: 5 months ago - Stars: 3 - Forks: 0

horacehoff/knowledge-quantify

An experimental machine learning model to quantify knowledge density

Language: Python - Size: 308 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

theislab/kBET

An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.

Language: HTML - Size: 7.83 MB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 156 - Forks: 23

xieguiyan/EVAtool

Extracellular Vesicles Abundance of ncRNAs expression quantification tool

Language: Jupyter Notebook - Size: 51.9 MB - Last synced at: 5 days ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1

comprna/ORQAS

ORF Quantification pipeline for Alternative Splicing

Language: Python - Size: 72.8 MB - Last synced at: 7 months ago - Pushed at: about 4 years ago - Stars: 16 - Forks: 6

cancerit/pycroquet

python Crispr Read to Oligo QUantification and Evaluation Tool

Language: Jupyter Notebook - Size: 77.8 MB - Last synced at: about 1 month ago - Pushed at: 11 months ago - Stars: 2 - Forks: 1

AICGijon/quantificationlib

QuantificationLib is an open-source library for quantification learning.

Language: Python - Size: 17.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 11 - Forks: 1

iquasere/reCOGnizer

A tool for domain based annotation with databases from the Conserved Domains Database

Language: HTML - Size: 61.4 MB - Last synced at: about 2 months ago - Pushed at: 9 months ago - Stars: 30 - Forks: 2

Laia-Pasquina/CocciVol

Combining FIJI and ilastik to provide a versatile and adaptable approach to automated Bacteria cell classification and cell volume determination from fluorescence images . This powerful combination of FIJI and ilastik (CocciVol) applied to Cocci bacterial cells provides an automated method with higher throughput of calculating cell volume.

Language: ImageJ Macro - Size: 10 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

ElisabethKugler/GliaMorph

#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology

Language: ImageJ Macro - Size: 166 KB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

Scaramir/HD_colocalization

Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.

Language: Python - Size: 883 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0

KoellenspergerLab/MeXpose

A workflow designed to perform multiplexed image analysis, specialising in (but not limited to) analysis of metal distribution in LA-ICP-TOFMS data.

Language: Python - Size: 13.5 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

pawel-czyz/labelshift

Bayesian Quantification with Black-Box Estimators

Language: Python - Size: 85.9 KB - Last synced at: 3 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

briatte/cpcp2017 Fork of Celyagd/ODS

Présentation journée d'étude chiffres privés, chiffres publics (31 mai 2017) Open Data & Santé

Size: 7.6 MB - Last synced at: 12 months ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0

dmattek/screenQC

Interactive visualisation of quantitative concepts in high-content screening

Language: R - Size: 269 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 1

rohitsuratekar/CardioPipeLine

Pipeline for RNA-seq analysis

Language: Python - Size: 208 KB - Last synced at: 7 months ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 0

jsugarelli/quantification

Quantification of qualitative survey data

Language: R - Size: 437 KB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 4 - Forks: 1

nf-core/metaboigniter

Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.

Language: Nextflow - Size: 46.1 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 15 - Forks: 14

MartinLuquetEcology/Parasitoid-sugar-feeding-and-parasitism-in-intercrops

These datasets and R scripts are complementary to the paper "Aphid honeydew may be the predominant sugar source for Aphidius parasitoids even in nectar-providing intercrops" published in Biological Control (https://doi.org/10.1016/j.biocontrol.2021.104596).

Language: R - Size: 175 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

smith-chem-wisc/ProteoformSuite

Construction, quantification, and visualization of proteoform families

Language: C# - Size: 512 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 11 - Forks: 19

DSV-CUB/MARISSA

MARISSA - Magnetic Resonance Imaging Software for Standardization

Language: Python - Size: 5.98 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ElisabethKugler/ZFVascularQuantification

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

Language: ImageJ Macro - Size: 3.14 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 10 - Forks: 0

fitushar/Quantification-of-Trabeculae-Inside-the-Heart-from-MRI-Using-Fractal-Analysis

In this project, we demonstrate the fractal dimension (FD) and manual segmentation of the Magnetic Resonance Imaging (MRI) of the heart that quantify amount of trabeculae inside the heart.

Language: MATLAB - Size: 20.5 MB - Last synced at: 4 months ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 0

elliotekj/DeltaE

DeltaE is a pure-Rust implementation of the CIEDE2000 algorithm

Language: Rust - Size: 12.7 KB - Last synced at: 24 days ago - Pushed at: almost 4 years ago - Stars: 24 - Forks: 9

NormanTrinh/APLASTIC-Q-rework

Aquatic plastic litter detection, classification and quantification

Language: Jupyter Notebook - Size: 365 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

bkrem/quanti-team

:link: A TenderMint blockchain API to make collaborative work measurable & quantifiable

Language: JavaScript - Size: 1.12 MB - Last synced at: about 1 month ago - Pushed at: over 8 years ago - Stars: 16 - Forks: 1

easyCEST/KALE

The code of a hierarchical K-means clustering method in the article “Hierarchical K-means clustering method for accelerated lorentzian estimation (KALE) in chemical exchange saturation transfer-magnetic resonance imaging quantification”.

Language: MATLAB - Size: 1.27 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

vguillet/Aircraft_Noise_Annoyance_Quantifier

A MATLAB-based aircraft noise processor and analyser aimed at Quantifying Noise Annoyance of aircrafts on the basis of different metrics

Language: MATLAB - Size: 403 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 0

MUL-Chair-of-Industrial-Logistics/crrt-in-cmsc-ghg-quantification

GHG Quantification spreadsheet for combined road-rail transportation

Size: 59.6 KB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

LBNL-ETA/QUOP

Quantitative Universal Option Prioritizer

Language: Jupyter Notebook - Size: 1.2 MB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

mohitisrani/VVUU_Helicopter_Model_Validation

Verification, Validation, Uncertainty Quantification and Qualification Project

Language: Matlab - Size: 4.16 MB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 2 - Forks: 0

bshashikadze/pepquantify

R package to prepare proteomics datasets for the peptide level quantification

Language: R - Size: 233 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

lambda-science/MyoQuant-Streamlit

MyoQuant-Streamlit is a demo web application to showcase usage of MyoQuant. Demo version deployed at: https://lbgi.fr/MyoQuant

Language: Python - Size: 7.09 MB - Last synced at: 5 days ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

Micheladestito/SlicerSwellingEvaluation

Language: Python - Size: 50.8 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

PaulingLiu/ROGUE

Assessing the purity of single cell population

Language: R - Size: 9.77 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 61 - Forks: 11

wohe157/heliq 📦

Quantification of helical morphologies

Language: Python - Size: 27.4 MB - Last synced at: 18 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

nuno-agostinho/RSEM-docker

Docker to run RSEM for transcript quantification

Size: 1.95 KB - Last synced at: about 1 month ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1

funsaized/PD-and-ET-Tremor-Quantification

🏥 Quantification of Parkinsonian and Essential Tremor using a novel, bluetooth-integrated accelerometer based system

Language: Python - Size: 7.15 MB - Last synced at: 3 days ago - Pushed at: over 8 years ago - Stars: 5 - Forks: 0

OfficeChromatography/quanTLC

Quantification in planar chromatography with videodensitograms

Language: R - Size: 69.4 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 1

mirkobunse/QUnfold.jl

Unified framework of quantification and unfolding algorithms

Language: Julia - Size: 405 KB - Last synced at: 11 days ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

assafna/cell-ecm-project

Quantifying the dynamics of long-range cell-cell mechanical communication paper code

Language: Python - Size: 3.03 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

Waqar351/Journal_paper

This project deals with a supervised learning task: Quantification whose objective is to estimate the class distribution in a test sample.

Size: 44.9 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

lweasel/piquant

A pipeline to assess the quantification of transcripts.

Language: Python - Size: 3.33 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 19 - Forks: 4

sulaimanvesal/CardiacQuanNet

[IEEE-JBHI 2020] TensorFlow/Keras implementation: Spatio-temporal Multi-task Learning for Cardiac MRI Left Ventricle Quantification

Size: 5.46 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 1

workflow-development-interest-group/fragpipe-proteomics-pipeline-tutorial

CWL descriptions for FragPipe Proteomics Pipline

Language: Common Workflow Language - Size: 150 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1

songjian/economic-data-tools

经济数据工具

Language: Jupyter Notebook - Size: 223 KB - Last synced at: 14 days ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

ElisabethKugler/Matlab3D-ImageAnalysis

Toolkit for 3D image processing and analysis.

Language: MATLAB - Size: 34.3 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

jameshughes89/NonlinearModellingWalking

Generating Nonlinear models of data from 6 sensors placed on a human in a very controlled environment.

Language: Python - Size: 43.5 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0

nuno-agostinho/sailfish-docker

Docker to run sailfish for quantification of isoform abundance

Size: 1000 Bytes - Last synced at: about 1 month ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

Drmirdeep/mirdeep2_patch

Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release

Language: Perl - Size: 69.3 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 2

arunmano121/DDQT

Defect Detection and Quantification Toolbox

Language: Python - Size: 260 KB - Last synced at: 9 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

vcangadi1/EELSAnalyser

EELSAnalyser is a EELS data analysis tool written in MATLAB. Contact : [email protected]

Language: MATLAB - Size: 90.5 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 0

RViMLab/JCM2020-Non-Perfusion-Segmentation

This repository contains the software developed for our 2020 publication to Journal of Clinical Medicine, on the topic of "Segmentation and Quantification of Retinal Capillary Non-Perfusion on Ultra-Wide-Field Retinal Fluorescein Angiography"

Language: Python - Size: 691 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

drpatelh/nf-core-sgrnaquant

UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline

Language: Nextflow - Size: 64.5 KB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

cpanse/cosmiq

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cosmiq.html Contributions: http://www.bioconductor.org/packages/devel/bioc/html/cosmiq.html. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cosmiq.

Language: R - Size: 27.3 KB - Last synced at: 2 months ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0

ricofehr/txt2sine

Transfer text datas by sine audio signal

Language: C - Size: 23.4 KB - Last synced at: over 2 years ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0

ginkgobioworks/calibrate Fork of benjiec/calibrate

Create and use linear- and power-regression based calibration curves

Language: Python - Size: 35.2 KB - Last synced at: 29 days ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 1