KomeijiForce/Active_Passive_Constraint_Koishiday_2024

An advanced persona-driven role-playing system with global faithfulness quantification and optimization. In memory of the Koishi's Day of 2024.

Language: Python - Size: 5.08 MB - Last synced: about 22 hours ago - Pushed: 1 day ago - Stars: 1 - Forks: 0

HawkMRS/pyAMARES

pyAMARES, an Open-Source Python Library for Fitting Magnetic Resonance Spectroscopy Data

Language: Python - Size: 2.91 MB - Last synced: about 16 hours ago - Pushed: 1 day ago - Stars: 0 - Forks: 0

DIPlib/diplib

Quantitative Image Analysis in C++, MATLAB and Python

Language: C++ - Size: 26 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 206 - Forks: 48

pinellolab/CRISPResso2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Language: Python - Size: 2.2 MB - Last synced: 1 day ago - Pushed: 3 days ago - Stars: 254 - Forks: 87

HLT-ISTI/QuaPy

A framework for Quantification written in Python

Language: Python - Size: 5.96 MB - Last synced: about 10 hours ago - Pushed: 1 day ago - Stars: 57 - Forks: 14

PavlidisLab/rnaseq-pipeline

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Language: Python - Size: 43.5 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 19 - Forks: 4

MannLabs/directlfq

Fast and accurate label-free quantification for small and very large numbers of proteomes

Language: Jupyter Notebook - Size: 177 MB - Last synced: 6 days ago - Pushed: 24 days ago - Stars: 33 - Forks: 4

zfyuan/EpiProfile2.0_Family

EpiProfile 2.0: A Computational Platform for Processing Epi-Proteomics Mass Spectrometry Data

Language: MATLAB - Size: 35.2 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 4 - Forks: 0

COMBINE-lab/alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

Language: Rust - Size: 4.08 MB - Last synced: 7 days ago - Pushed: 2 months ago - Stars: 152 - Forks: 15

cancerit/pycroquet

python Crispr Read to Oligo QUantification and Evaluation Tool

Language: Jupyter Notebook - Size: 78.8 MB - Last synced: 18 days ago - Pushed: about 2 years ago - Stars: 1 - Forks: 1

lambda-science/MyoQuant

MyoQuant🔬: a tool to automatically quantify pathological features in muscle fiber histology images. Demo version deployed at: https://lbgi.fr/MyoQuant

Language: Python - Size: 3.75 MB - Last synced: 7 days ago - Pushed: 22 days ago - Stars: 2 - Forks: 1

xieguiyan/EVAtool

Extracellular Vesicles Abundance of ncRNAs expression quantification tool

Language: Jupyter Notebook - Size: 51.9 MB - Last synced: 10 days ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

yufongpeng/ChemistryQuantitativeAnalysis.jl

Quantitative analysis of chemicals

Language: Julia - Size: 512 KB - Last synced: 24 days ago - Pushed: 25 days ago - Stars: 0 - Forks: 0

jsugarelli/quantification

Quantification of qualitative survey data

Language: R - Size: 437 KB - Last synced: 23 days ago - Pushed: almost 6 years ago - Stars: 4 - Forks: 1

microsoft/PullRequestQuantifier

A highly customizable framework to quantify a pull request within a repository context.

Language: C# - Size: 5.06 MB - Last synced: 7 days ago - Pushed: 30 days ago - Stars: 53 - Forks: 35

songjian/cnstats

获取中国国家统计局网站数据。

Language: Python - Size: 38.1 KB - Last synced: 4 days ago - Pushed: about 1 month ago - Stars: 25 - Forks: 9

nf-core/metaboigniter

Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.

Language: Nextflow - Size: 46.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 15 - Forks: 14

COMBINE-lab/salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Language: C++ - Size: 209 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 725 - Forks: 156

MartinLuquetEcology/Parasitoid-sugar-feeding-and-parasitism-in-intercrops

These datasets and R scripts are complementary to the paper "Aphid honeydew may be the predominant sugar source for Aphidius parasitoids even in nectar-providing intercrops" published in Biological Control (https://doi.org/10.1016/j.biocontrol.2021.104596).

Language: R - Size: 175 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

iquasere/reCOGnizer

A tool for domain based annotation with databases from the Conserved Domains Database

Language: HTML - Size: 61.3 MB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 24 - Forks: 2

rajewsky-lab/mirdeep2

Discovering known and novel miRNAs from small RNA sequencing data

Language: Perl - Size: 7.37 MB - Last synced: 28 days ago - Pushed: 6 months ago - Stars: 130 - Forks: 51

smith-chem-wisc/ProteoformSuite

Construction, quantification, and visualization of proteoform families

Language: C# - Size: 512 MB - Last synced: about 2 months ago - Pushed: 11 months ago - Stars: 11 - Forks: 19

smith-chem-wisc/FlashLFQ

Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics

Language: C# - Size: 12.3 MB - Last synced: about 2 months ago - Pushed: 5 months ago - Stars: 18 - Forks: 15

Scaramir/HD_colocalization

Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.

Language: Python - Size: 858 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0

mchevalier2/crestr

A R package to apply the climate reconstruction CREST.

Language: R - Size: 143 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 9 - Forks: 0

pawel-czyz/labelshift

Python library for label shift and quantification.

Language: Python - Size: 98.6 KB - Last synced: 4 days ago - Pushed: 27 days ago - Stars: 1 - Forks: 0

nf-core/dualrnaseq

Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.

Language: Nextflow - Size: 38.8 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 16 - Forks: 29

KoellenspergerLab/MeXpose

A workflow designed to perform multiplexed image analysis, specialising in (but not limited to) analysis of metal distribution in LA-ICP-TOFMS data.

Language: Python - Size: 13.5 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

DSV-CUB/MARISSA

MARISSA - Magnetic Resonance Imaging Software for Standardization

Language: Python - Size: 5.98 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

ElisabethKugler/ZFVascularQuantification

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

Language: ImageJ Macro - Size: 3.14 MB - Last synced: 8 days ago - Pushed: 12 months ago - Stars: 10 - Forks: 0

cpanse/protViz

Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Language: R - Size: 2.42 MB - Last synced: 2 months ago - Pushed: 5 months ago - Stars: 10 - Forks: 3

elliotekj/DeltaE

DeltaE is a pure-Rust implementation of the CIEDE2000 algorithm

Language: Rust - Size: 12.7 KB - Last synced: 13 days ago - Pushed: almost 3 years ago - Stars: 24 - Forks: 8

NormanTrinh/APLASTIC-Q-rework

Aquatic plastic litter detection, classification and quantification

Language: Jupyter Notebook - Size: 365 KB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

comprna/ORQAS

ORF Quantification pipeline for Alternative Splicing

Language: Python - Size: 72.8 MB - Last synced: 2 months ago - Pushed: about 3 years ago - Stars: 15 - Forks: 6

bkrem/quanti-team

:link: A TenderMint blockchain API to make collaborative work measurable & quantifiable

Language: JavaScript - Size: 1.12 MB - Last synced: about 2 months ago - Pushed: over 7 years ago - Stars: 16 - Forks: 1

easyCEST/KALE

The code of a hierarchical K-means clustering method in the article “Hierarchical K-means clustering method for accelerated lorentzian estimation (KALE) in chemical exchange saturation transfer-magnetic resonance imaging quantification”.

Language: MATLAB - Size: 1.27 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

theislab/kBET

An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.

Language: R - Size: 7.82 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 137 - Forks: 23

nuno-agostinho/RSEM-docker

Docker to run RSEM for transcript quantification

Size: 1.95 KB - Last synced: 7 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 1

arnikz/PIQMIe

Proteomics Identifications & Quantitations Data Management & Integration Service

Language: JavaScript - Size: 93.8 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

ivancarras/color-quantification-firefly-algorithm

Color quantification| reduction using firefly algorithm

Language: C - Size: 19.5 MB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 3 - Forks: 0

Cai-Lab-at-University-of-Michigan/nGauge

A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.

Language: Jupyter Notebook - Size: 15.2 MB - Last synced: 27 days ago - Pushed: over 2 years ago - Stars: 5 - Forks: 1

vguillet/Aircraft_Noise_Annoyance_Quantifier

A MATLAB-based aircraft noise processor and analyser aimed at Quantifying Noise Annoyance of aircrafts on the basis of different metrics

Language: MATLAB - Size: 403 MB - Last synced: 9 months ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 0

nuno-agostinho/sailfish-docker

Docker to run sailfish for quantification of isoform abundance

Size: 1000 Bytes - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

MUL-Chair-of-Industrial-Logistics/crrt-in-cmsc-ghg-quantification

GHG Quantification spreadsheet for combined road-rail transportation

Size: 59.6 KB - Last synced: about 2 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

LBNL-ETA/QUOP

Quantitative Universal Option Prioritizer

Language: Jupyter Notebook - Size: 1.2 MB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 2 - Forks: 1

mohitisrani/VVUU_Helicopter_Model_Validation

Verification, Validation, Uncertainty Quantification and Qualification Project

Language: Matlab - Size: 4.16 MB - Last synced: 9 months ago - Pushed: almost 7 years ago - Stars: 2 - Forks: 0

bshashikadze/pepquantify

R package to prepare proteomics datasets for the peptide level quantification

Language: R - Size: 233 KB - Last synced: 9 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

SilMon/NucDetect

Python interface to detect and quantify intranuclear proteins

Language: Python - Size: 66 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 3 - Forks: 0

Micheladestito/SlicerSwellingEvaluation

Language: Python - Size: 50.8 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

lambda-science/MyoQuant-Streamlit

MyoQuant-Streamlit is a demo web application to showcase usage of MyoQuant. Demo version deployed at: https://lbgi.fr/MyoQuant

Language: Python - Size: 7.09 MB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 1 - Forks: 0

PaulingLiu/ROGUE

Assessing the purity of single cell population

Language: R - Size: 9.77 MB - Last synced: 12 months ago - Pushed: almost 2 years ago - Stars: 61 - Forks: 11

wohe157/heliq 📦

Quantification of helical morphologies

Language: Python - Size: 27.4 MB - Last synced: 11 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

erdogant/flameplot

flameplot is a python package for the quantification of local similarity across two maps or embeddings.

Language: Python - Size: 6.18 MB - Last synced: 9 days ago - Pushed: about 1 year ago - Stars: 8 - Forks: 1

AICGijon/quantificationlib

QuantificationLib is an open-source library for quantification learning.

Language: Python - Size: 17.3 MB - Last synced: 10 days ago - Pushed: about 1 month ago - Stars: 10 - Forks: 1

cpanse/cosmiq

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cosmiq.html Contributions: http://www.bioconductor.org/packages/devel/bioc/html/cosmiq.html. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cosmiq.

Language: R - Size: 27.3 KB - Last synced: about 1 year ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

snimmagadda1/PD-and-ET-Tremor-Quantification

🏥 Quantification of Parkinsonian and Essential Tremor using a novel, bluetooth-integrated accelerometer based system

Language: Python - Size: 7.15 MB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 5 - Forks: 0

ElisabethKugler/GliaMorph

#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology

Language: ImageJ Macro - Size: 166 KB - Last synced: 2 days ago - Pushed: 5 months ago - Stars: 4 - Forks: 0

shm-unesp/DATASET_PLATEUN01

CONCEPT is a dataset of lamb-wave measured in composite structures in healthy and damaged states. This experiment was conducted at the SHM Lab from UNESP Ilha Solteira.

Language: Jupyter Notebook - Size: 15.6 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 15 - Forks: 5

OfficeChromatography/quanTLC

Quantification in planar chromatography with videodensitograms

Language: R - Size: 69.4 MB - Last synced: 7 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 1

mirkobunse/QUnfold.jl

Unified framework of quantification and unfolding algorithms

Language: Julia - Size: 405 KB - Last synced: 3 days ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

rohitsuratekar/CardioPipeLine

Pipeline for RNA-seq analysis

Language: Python - Size: 208 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 7 - Forks: 0

assafna/cell-ecm-project

Quantifying the dynamics of long-range cell-cell mechanical communication paper code

Language: Python - Size: 3.03 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

Waqar351/Journal_paper

This project deals with a supervised learning task: Quantification whose objective is to estimate the class distribution in a test sample.

Size: 44.9 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

SBCSnicholsLab/pseudogene_quantification

Repo accompanying our manuscript on quantifying extra-nuclear inserts from population-level low-pass sequencing data

Language: Shell - Size: 69.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

lweasel/piquant

A pipeline to assess the quantification of transcripts.

Language: Python - Size: 3.33 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 19 - Forks: 4

sulaimanvesal/CardiacQuanNet

[IEEE-JBHI 2020] TensorFlow/Keras implementation: Spatio-temporal Multi-task Learning for Cardiac MRI Left Ventricle Quantification

Size: 5.46 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 4 - Forks: 1

fitushar/Quantification-of-Trabeculae-Inside-the-Heart-from-MRI-Using-Fractal-Analysis

In this project, we demonstrate the fractal dimension (FD) and manual segmentation of the Magnetic Resonance Imaging (MRI) of the heart that quantify amount of trabeculae inside the heart.

Language: MATLAB - Size: 20.5 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0

workflow-development-interest-group/fragpipe-proteomics-pipeline-tutorial

CWL descriptions for FragPipe Proteomics Pipline

Language: Common Workflow Language - Size: 150 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 1

songjian/economic-data-tools

经济数据工具

Language: Jupyter Notebook - Size: 223 KB - Last synced: 12 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

dmattek/screenQC

Interactive visualisation of quantitative concepts in high-content screening

Language: R - Size: 269 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 2 - Forks: 1

ElisabethKugler/Matlab3D-ImageAnalysis

Toolkit for 3D image processing and analysis.

Language: MATLAB - Size: 34.3 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

jameshughes89/NonlinearModellingWalking

Generating Nonlinear models of data from 6 sensors placed on a human in a very controlled environment.

Language: Python - Size: 43.5 MB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

Drmirdeep/mirdeep2_patch

Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release

Language: Perl - Size: 69.3 KB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 2

vcangadi1/EELSAnalyser

EELSAnalyser is a EELS data analysis tool written in MATLAB. Contact : [email protected]

Language: MATLAB - Size: 90.5 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 5 - Forks: 0

RViMLab/JCM2020-Non-Perfusion-Segmentation

This repository contains the software developed for our 2020 publication to Journal of Clinical Medicine, on the topic of "Segmentation and Quantification of Retinal Capillary Non-Perfusion on Ultra-Wide-Field Retinal Fluorescein Angiography"

Language: Python - Size: 691 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

drpatelh/nf-core-sgrnaquant

UNDER CONSTRUCTION: CRISPR sgRNA quantification pipeline

Language: Nextflow - Size: 64.5 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

briatte/cpcp2017 Fork of Celyagd/ODS

Présentation journée d'étude chiffres privés, chiffres publics (31 mai 2017) Open Data & Santé

Size: 7.6 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

ricofehr/txt2sine

Transfer text datas by sine audio signal

Language: C - Size: 23.4 KB - Last synced: about 1 year ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

ginkgobioworks/calibrate Fork of benjiec/calibrate

Create and use linear- and power-regression based calibration curves

Language: Python - Size: 35.2 KB - Last synced: 5 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 1