GitHub topics: openscience

Repositories

opengeos/open-science

Training materials for the Open Science Workshop and Symposium at the University of Tennessee, Knoxville

Size: 264 KB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 4 - Forks: 2

AlexsLemonade/OpenScPCA-analysis

An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal

Language: HTML - Size: 3.49 GB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 12 - Forks: 18

nsidc/earthaccess

Python Library for NASA Earthdata APIs

Language: Python - Size: 12.1 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 478 - Forks: 102

CenterForOpenScience/osf.io

Facilitating Open Science

Language: Python - Size: 201 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 688 - Forks: 343

CoLRev-Environment/search-query

Search-query: A Python package for translating academic literature search queries (i.e., parsing and serializing), but also for validating, simplifying, and improving them.

Language: Python - Size: 594 KB - Last synced at: about 1 hour ago - Pushed at: about 2 hours ago - Stars: 3 - Forks: 6

nasa-jpl/itslive-web

NASA ITS_LIVE website

Language: CSS - Size: 17.9 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 1

openresearchcalendar/openresearchcalendar.github.io

Documentation & Code for the community tool: 'Open Research Calendar'

Language: HTML - Size: 3.12 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 20 - Forks: 8

gladstone-institutes/Interactive-Enrichment-Analysis

A set of Shiny apps to provide interactive enrichment analysis and exploration of results.

Language: R - Size: 415 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 28 - Forks: 8

expyriment/expyriment

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

Language: Python - Size: 8.61 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 122 - Forks: 41

guillaumegodet/c2LabHAL

Une appli pour télécharger en .csv une liste de publications scientifiques référencées sur Scopus, Pubmed et OpenAlex et voir si elles ont été déposées dans HAL

Language: Python - Size: 143 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 1 - Forks: 0

4Science/DSpace Fork of DSpace/DSpace

This repository contains the 4Science optimized DSpace & DSpace-CRIS distribution.

Language: Java - Size: 230 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 47 - Forks: 64

openPMD/openPMD-api

:floppy_disk: C++ & Python API for Scientific I/O

Language: C++ - Size: 21.6 MB - Last synced at: 6 days ago - Pushed at: 11 days ago - Stars: 147 - Forks: 52

CenterForOpenScience/ember-osf-web

Ember front-end for the Open Science Framework

Language: TypeScript - Size: 42.2 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 120 - Forks: 59

CoLRev-Environment/colrev

CoLRev: An open-source environment for collaborative reviews

Language: Python - Size: 35.1 MB - Last synced at: 8 days ago - Pushed at: 13 days ago - Stars: 32 - Forks: 25

pyOpenSci/pyosPackage

An example package that compliments our package guide & tutorials.

Language: Python - Size: 92.8 KB - Last synced at: 9 days ago - Pushed at: 14 days ago - Stars: 3 - Forks: 4

dataobservatory-eu/contributors

Contributors' Manual for the Data Observatories and Open Collections

Language: TeX - Size: 8.6 MB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 4

DataverseNO/dataverse Fork of IQSS/dataverse

Open source research data repository software

Language: Java - Size: 143 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 0

manics/kubernetes-omero

Kubernetes Helm charts for OMERO

Language: Python - Size: 1.76 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 9 - Forks: 11

ASanchez-Tojar/code-sharing_policies_matter

This is a repository that contains all code and data needed to reproduce the results of a meta-research study looking at code (and data) sharing in ecology journals with and without code-sharing policies

Language: HTML - Size: 6.24 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 1 - Forks: 0

marbarrantescepas/OS-neuroscience

Open Science in Neuroscience: A Practical Guidelines for Researchers

Size: 37.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 1

ethanwillis/zotero-scihub

A plugin that will automatically download PDFs of zotero items from sci-hub

Language: TypeScript - Size: 873 KB - Last synced at: about 1 month ago - Pushed at: almost 2 years ago - Stars: 3,703 - Forks: 186

openPMD/openPMD-validator

:ballot_box_with_check: Validator and Example Scripts

Language: Python - Size: 313 KB - Last synced at: about 10 hours ago - Pushed at: 4 months ago - Stars: 5 - Forks: 8

aokellermann/nexus-now

Access scientific literature in your browser using standard template construct, an IPFS-backed website for nexus search.

Language: JavaScript - Size: 62.5 KB - Last synced at: 21 days ago - Pushed at: 9 months ago - Stars: 72 - Forks: 1

ShrubHub/ClimNicheHub

Climatic niche estimation of the tundra plant species recorded in ITEX.

Language: R - Size: 264 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 1

CenterForOpenScience/SHARE

SHARE is building a free, open, data set about research and scholarly activities across their life cycle.

Language: Python - Size: 40.8 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 101 - Forks: 66

open-neuroscience/open-neuroscience.github.io Fork of HugoBlox/theme-academic-cv

new implementation of Open Neuroscience website

Language: Python - Size: 123 MB - Last synced at: 1 day ago - Pushed at: about 1 month ago - Stars: 19 - Forks: 7

openPMD/openPMD-standard

:notebook: Open Standard for Particle-Mesh Data

Size: 358 KB - Last synced at: about 4 hours ago - Pushed at: 9 months ago - Stars: 82 - Forks: 29

Jeremy-borderieux/Article_microclim_vosges

Reproducible analysis of a microclimate and community ecology paper

Language: R - Size: 85.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

open-neuroscience/open-neuroscience.github.io_backup

Open Neuroscience website

Language: HTML - Size: 107 MB - Last synced at: 1 day ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0

CenterForOpenScience/waterbutler

WaterButler is a Python web application for interacting with various file storage services via a single RESTful API, developed at Center for Open Science.

Language: Python - Size: 26.7 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 62 - Forks: 81

priya-gitTest/priya-gitTest

Priyanka in Netherlands

Size: 223 KB - Last synced at: 7 days ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

APPIAN-PET/APPIAN

APPIAN is an open-source automated software pipeline for analyzing PET images in conjunction with MRI. The goal of APPIAN is to make PET tracer kinetic data analysis easy for users with moderate computing skills and to facilitate reproducible research.

Language: JavaScript - Size: 418 MB - Last synced at: 7 days ago - Pushed at: 8 months ago - Stars: 41 - Forks: 17

aokellermann/zotero-nexus

Access scientific literature in Zotero using standard template construct, an IPFS-backed website for nexus search.

Language: TypeScript - Size: 2.36 MB - Last synced at: 21 days ago - Pushed at: 2 months ago - Stars: 31 - Forks: 1

diverso-lab/uvlhub

Repository of feature models in UVL format integrated with Zenodo and flamapy following Open Science principles - Developed by DiversoLab

Language: Python - Size: 49.4 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 6 - Forks: 241

modenaxe/msk-STAPLE

STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.

Language: MATLAB - Size: 139 MB - Last synced at: 8 days ago - Pushed at: 8 months ago - Stars: 60 - Forks: 17

msleungyi/Re-SearchTerms

The GitHub repository for storing the dataset, R scripts, and other materials of "Re-SearchTerms", the Shiny App. Access our app here:

Language: R - Size: 11.5 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

NAMI-THU/IGTPrototypingTool

A Java-based tool for prototyping of medical Image Guided Therapy (IGT) applications. OpenCV and OpenIGTLink are included. Build tool is Gradle.

Language: Java - Size: 66.8 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 2 - Forks: 9

OpenChemistry/materialsdatabank

An information portal for 3D atomic electron tomography data

Language: JavaScript - Size: 1.11 MB - Last synced at: 17 days ago - Pushed at: almost 2 years ago - Stars: 8 - Forks: 5

openPMD/openPMD-viewer

:snake: Python visualization tools for openPMD files

Language: Python - Size: 3.46 MB - Last synced at: 9 days ago - Pushed at: about 2 months ago - Stars: 68 - Forks: 50

caddickzac/FalseNewsSusceptibilityAndSleep

Study information from research on sleep and false news susceptibility

Size: 196 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

willingc/willing-consulting-2022

Carol's blog and Willing Consulting Website

Language: SCSS - Size: 200 MB - Last synced at: about 20 hours ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

francesco-vespignani/RepetitionMaze

Repository for Repetition Maze Experiments using jsPsych

Language: HTML - Size: 3.43 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

MouseLand/stringer-pachitariu-et-al-2018b

Responses of 10,000 neurons to 2,800 natural images

Language: MATLAB - Size: 15.7 MB - Last synced at: 12 days ago - Pushed at: over 5 years ago - Stars: 68 - Forks: 21

Big-Life-Lab/cchsflow

Variable transformation and harmonization for the Canadian Community Health Survey

Language: R - Size: 57.3 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 12 - Forks: 7

MouseLand/stringer-pachitariu-et-al-2018a

Recordings of 10k neurons during spontaneous behaviors

Language: MATLAB - Size: 5.71 MB - Last synced at: 12 days ago - Pushed at: about 1 year ago - Stars: 50 - Forks: 15

mtthsdzwn/20240923-Sorbonne

Slides for my presentation at the Barcelona Declaration conference at Sorbonnen University, 23-24 sept 2024

Size: 7.5 MB - Last synced at: 3 days ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

coderefinery/hpc-containers

Lesson about containers for HPC with focus on Apptainer.

Language: Python - Size: 17.9 MB - Last synced at: 6 days ago - Pushed at: 6 months ago - Stars: 3 - Forks: 0

Open-Science-Community-Saudi-Arabia/OSCSA-en-blog

OSCSA English blog

Language: HTML - Size: 16.4 MB - Last synced at: 8 days ago - Pushed at: 7 months ago - Stars: 2 - Forks: 15

brucellino/hackfest-app

First attempt at an app to prepare for and run an open science platform hack

Language: Ruby - Size: 152 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

openPMD/openPMD-visit-plugin

:telescope: Plugin allowing VisIt to read openPMD files

Language: C - Size: 312 KB - Last synced at: about 10 hours ago - Pushed at: over 3 years ago - Stars: 9 - Forks: 4

FreeOurKnowledge/website

Project Free Our Knowledge aims to organise collective action in support of open and reproducible research practices. This repository is used to design new campaigns (using the issues feature) and to build the website (www.freeourknowledge.org).

Language: HTML - Size: 23.5 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 34 - Forks: 10

uwhackweek/event-page-2024

Event page for combined event with schedule and team

Language: HTML - Size: 695 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 22

VLucet/rgovcan

Easy access to the Canadian Open Government Portal

Language: R - Size: 716 KB - Last synced at: 17 days ago - Pushed at: over 2 years ago - Stars: 22 - Forks: 4

BlueObelisk/blueobelisk.github.io

The website.

Size: 36.1 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 3

AeroTUBerlin/TUBflow

TUBflow is an innovative open-source application for the digital postprocessing of oil film visualizations in wind tunnel tests.

Language: Python - Size: 11.6 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

CooperSmout/coopersmout.github.io Fork of daattali/beautiful-jekyll

✨ My personal website and blog

Language: HTML - Size: 60.9 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

phdpablo/curso-open-science

Curso prático de Ciência Aberta focado em ferramentas para reprodutibilidade: OSF, Zenodo, Zotero, Git/GitHub, RStudio/Quarto, e Docker. Aprenda a tornar sua pesquisa transparente, colaborativa e reprodutível. Ideal para pós-graduandos e cientistas de todas as áreas.

Language: TeX - Size: 33.1 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 4 - Forks: 0

ElisabethKugler/GliaMorph

#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology

Language: ImageJ Macro - Size: 166 KB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

diverso-lab/uvlhub-docs

Language: HTML - Size: 1.1 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

amchagas/open-hardware-supply

having a closer look on how OSH papers are evolving over time

Language: Jupyter Notebook - Size: 212 MB - Last synced at: 18 days ago - Pushed at: 10 months ago - Stars: 5 - Forks: 2

Jeremy-borderieux/Article_Landscape_Forest_Cool_Comm

Reproducible analysis of a Global Ecology and Biogeography paper

Language: R - Size: 132 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

robna/MPX_specDB

Data and code repository for MicroPlastiX spectroscopic measurements

Language: Python - Size: 141 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 3 - Forks: 0

DChaupis/Epi-Comunicadores

Un minitutorial sobre Análisis Inicial de la Data usando datos abiertos sobre el caso COVID19, dirigido a comunicadores científicos orientados a la epidemiología.

Language: R - Size: 13 MB - Last synced at: 10 months ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0

geco-bern/phenoEOS

Relationships between EOS and Anet

Language: R - Size: 27.6 MB - Last synced at: 10 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 2

InfantLab/Policies Fork of BahlaiLab/Policies

Goldsmiths InfantLab policies and operating procedures

Size: 70.3 KB - Last synced at: 11 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

InfantLab/NotebookDemos

Using Jupyter notebooks for reproducible scientific analysis.

Language: Jupyter Notebook - Size: 2.63 MB - Last synced at: 11 months ago - Pushed at: about 3 years ago - Stars: 6 - Forks: 3

Jeremy-borderieux/Article_thermo_beta_part

Reproducible analysis of a community ecology paper published in NEE

Language: HTML - Size: 156 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

h-fuzzy-logic/data-analytics-spring

Open data and cloud computing to answer the question: Are we losing our spring days?

Language: Jupyter Notebook - Size: 390 KB - Last synced at: 19 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

steltenpower/tabs-as-sheets

IDEA/THING: Why make static sheets when you can use browser tabs with live content already existing?

Size: 28.3 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

marrious11/marrious11

Marrious11 is my main github account name. It lists a couple of projects I have engaged with so far in my journey tech.

Language: HTML - Size: 318 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 0

openPMD/openPMD-projects

:clipboard: Overview on Projects around openPMD

Size: 86.9 KB - Last synced at: about 2 months ago - Pushed at: 11 months ago - Stars: 8 - Forks: 15

tbrycekelly/UAF-Plankline

The UAF adaptation of the PLANKLINE processing pipeline developed by OSU.

Language: Python - Size: 37.3 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1

krugbuild/zensur-in-bildern

Verlauf der Zensur der chinesischen Wikipedia in den 2010er Jahren in Bildern

Language: HTML - Size: 52.3 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

oxinabox/DataDepsGenerators.jl

Utility for developers to help define DataDeps registration blocks, for reusing existing Data with DataDeps.jl

Language: Julia - Size: 276 KB - Last synced at: 7 days ago - Pushed at: over 4 years ago - Stars: 18 - Forks: 6

openPMD/openPMD-converter

:arrows_clockwise: Useful Converter Tools for openPMD Files

Size: 20.5 KB - Last synced at: about 2 months ago - Pushed at: 12 months ago - Stars: 5 - Forks: 1

MrHedmad/data-myr 📦

A way to locally manage data in a FAIR way

Language: Python - Size: 81.1 KB - Last synced at: 5 months ago - Pushed at: 12 months ago - Stars: 2 - Forks: 0

brunomontezano/cannabis-bd-results

Language: HTML - Size: 547 KB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

kantale/arkalos

An Open Science Collaborative system

Language: JavaScript - Size: 147 KB - Last synced at: 12 months ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

openPMD/openPMD-updater

:arrow_double_up: Update openPMD files to newer versions of the openPMD standard

Language: Python - Size: 128 KB - Last synced at: about 10 hours ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 3

openml/openml-r

R package to interface with OpenML

Language: Jupyter Notebook - Size: 4.17 MB - Last synced at: 12 months ago - Pushed at: over 2 years ago - Stars: 95 - Forks: 37

cos-labs/osf-groups

Group and task management for https://osf.io

Size: 196 KB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0

openscience/community-projects

This project is intended to compile a comprehensive collection of projects around scientific topics with a special focus on openscience, openaccess, opendata, citizen science and many similar projects. If you know of a project, or if you think your project belongs in this collection, just send me a short message.

Size: 68.4 KB - Last synced at: 9 months ago - Pushed at: almost 4 years ago - Stars: 8 - Forks: 4

ivanhercaz/wikidata-iatext 📦

resultados del proyecto Wikidata-IATEXT | results of the Wikidata-IATEXT project

Language: Python - Size: 95.7 KB - Last synced at: 5 days ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

MatthewErvinChasco/Fano

Representing 3D vectors (quaternions) and 7D vectors (octonions) with Dirac matrices for easy computation of inner and outer products.

Size: 161 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

MatthewErvinChasco/SU-Generator

This code generates the generator matrices for special unitary groups of a given degree. It can also use the Higgs mechanism to break symmetry to return boson mass terms.

Size: 236 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0