GitHub topics: microscopy-data
dmattek/dzPlateViewer
Deep Zoom Plate Viewer for microscopy images
Language: JavaScript - Size: 9.65 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 16 - Forks: 3
jsmithss/toccatr
Harmony high-content imaging data tools
Language: R - Size: 309 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
WU-BIMAC/W-IDM_OmeroImporterExcelHelperPy
This repository contains Python software that was created to explore file system directories and automatically collect the names of image data files to be annotated with experimental and sample preparation metadata and imported into OMERO.
Language: Python - Size: 603 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 1
WU-BIMAC/MicroMetaApp-React
This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!
Language: JavaScript - Size: 29.8 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 7 - Forks: 2
melchisedech333/laser-scanning-microscopy
🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.
Language: PHP - Size: 4.39 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 1
Oftatkofta/cellocity
Scientific software for analysis of confluent cell dynamics.
Language: Python - Size: 91.7 MB - Last synced at: 10 days ago - Pushed at: 29 days ago - Stars: 7 - Forks: 3
SchmChris/Postcards-2024 Fork of NFDI4BIOIMAGE/Postcards-2024
NFDI4BIOIMAGE data management illustrations by Henning Falk (2024)
Size: 40.5 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
sanger-matteo/Analyse-Cell-Colonization-Patterns
Quantify the colonization behaviours on surfaces for different bacterial strains
Language: Mathematica - Size: 91.1 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
JeSandovalG/LateralDiffusionAnalysis_FCS
Python-based script used to analyze Fluorescence Correlation Spectroscopy (FCS) data for lateral diffusion coefficient measurements. Developed in the Biophysics laboratory at University of Los Andes, Colombia.
Language: Jupyter Notebook - Size: 3.91 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
WU-BIMAC/NBOMicroscopyMetadataSpecs
The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Group (https://www.bioimagingna.org/qc-dm-wg) for documenting microscopy experiments and assessing the quality of image data.
Size: 416 MB - Last synced at: 2 days ago - Pushed at: almost 2 years ago - Stars: 15 - Forks: 4
WU-BIMAC/W-IDM_OmeroImporter
This repository contains software that was developed for the management of bioimage data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
Language: Java - Size: 10.2 MB - Last synced at: 2 days ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 1
WU-BIMAC/W-IDM_OmeroImporterPy
This repository contains software that was developed to add metadata annotations to bioimage data before importing it into OMERO
Language: Python - Size: 103 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 3 - Forks: 0
WU-BIMAC/MicroMetaApp-Omero
This is a limited-functionality, beta - implementation of the integration of Micro-Meta App in the OMERO.web client
Language: JavaScript - Size: 27.9 MB - Last synced at: 2 days ago - Pushed at: 9 months ago - Stars: 4 - Forks: 2
Jack-Gregory-Bioinformatics/CryptoClassifier
Repository for an automated microscopy image analysis pipeline (CryptoClassifier), using ImageJ.
Language: R - Size: 78.1 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0
ElisabethKugler/GliaMorph
#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology
Language: ImageJ Macro - Size: 166 KB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0
arkitektio-apps/mikro-napari
napari within the mikro environment
Language: Python - Size: 1.04 MB - Last synced at: 24 days ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
tlnagy/Nagy_2023_SwellMigration
Code used to generate the figures for the "Neutrophils Actively Swell to Potentiate Migration" paper
Language: Julia - Size: 32.6 MB - Last synced at: 7 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
ElisabethKugler/ZFVascularQuantification
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
Language: ImageJ Macro - Size: 3.14 MB - Last synced at: 6 days ago - Pushed at: almost 2 years ago - Stars: 10 - Forks: 0
clintyr/bio-image-analysis
Example workflows for image processing, segmentation and analysis. Stitching and alignment functions also implemented.
Language: Jupyter Notebook - Size: 47.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
georgeglidden/relenc
convolutional-relational neural network architectures for segmentation of electron micrographs
Language: Python - Size: 21.5 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
WU-BIMAC/4DNMetadataSchemaXSD2JSONConverter
This is a converter written in Java that translates an XSD microscopy metadata schema into JSON
Language: Java - Size: 24.9 MB - Last synced at: 2 days ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0
Gianluca-G98/Train_microglial_models
The code provides an easy way to train Deep learning models on personal data after logging it on Weights&Biases. It already contains 4 high-performing architectures and allows the user to create and use any desired model.
Language: Python - Size: 3.67 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
WU-BIMAC/W-IDM_OmeroDataWriter
This repository contains sofware that was created for the automatic image data management of image data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
Language: Java - Size: 43.9 KB - Last synced at: 3 days ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0
WU-BIMAC/MicroMetaApp-Electron
Electron wrapped, stand-alone version of Micro-Meta App, microscopy metadata for the real world!
Language: JavaScript - Size: 60.7 MB - Last synced at: 2 days ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 1
WU-BIMAC/NBO-Q_MicroscopyGlossary
4DN-BINA-OME-QUAREP Microscopy Glossary
Language: Python - Size: 104 KB - Last synced at: 3 days ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
FabrizioMusacchio/ZARR_tests
Python code that I used in my blog posts on the Zarr file format.
Language: Python - Size: 4.98 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
GVS-Lab/chrometrics
Nuclear Morphology and Chromatin Organization Features
Language: Jupyter Notebook - Size: 4.29 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 3
