Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: zarr

Repositories

mpiannucci/charizarr

A small, opinionated, async zarr 3.0 implementation written in rust

Language: Rust - Size: 74.2 KB - Last synced: about 4 hours ago - Pushed: 1 day ago - Stars: 4 - Forks: 0

casangi/graphviper

Dask Based MapReduce for Multi Xarray Datasets.

Language: Python - Size: 2.12 MB - Last synced: about 23 hours ago - Pushed: 1 day ago - Stars: 1 - Forks: 0

saalfeldlab/n5-ij

ImageJ convenience layer for N5

Language: Java - Size: 2.6 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 13 - Forks: 8

zarr-developers/zarr-developers.github.io

Zarr Homepage

Language: JavaScript - Size: 21.6 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 2 - Forks: 10

manzt/zarrita.js

A JavaScript toolkit for working with chunked, compressed, n-dimensional arrays

Language: TypeScript - Size: 831 KB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 34 - Forks: 4

cgohlke/tifffile

Read and write TIFF files

Language: Python - Size: 3.75 MB - Last synced: 2 days ago - Pushed: 6 days ago - Stars: 481 - Forks: 152

hms-dbmi/viv

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

Language: JavaScript - Size: 14.1 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 256 - Forks: 41

gzuidhof/zarr.js

Javascript implementation of Zarr

Language: TypeScript - Size: 977 KB - Last synced: 2 days ago - Pushed: about 2 months ago - Stars: 127 - Forks: 21

ua-datalab/Geospatial_Workshops

UArizona DataLab Workshops

Language: Jupyter Notebook - Size: 132 MB - Last synced: 4 days ago - Pushed: 5 days ago - Stars: 4 - Forks: 4

Becksteinlab/zarrtraj

zarrtraj MDAKit for @MDAnalysis

Language: Jupyter Notebook - Size: 10.1 MB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 3 - Forks: 1

google-research/arco-era5

Recipes for reproducing Analysis-Ready & Cloud Optimized (ARCO) ERA5 datasets.

Language: Python - Size: 4.68 MB - Last synced: about 8 hours ago - Pushed: 16 days ago - Stars: 179 - Forks: 12

vitessce/vitessce

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

Language: JavaScript - Size: 50.9 MB - Last synced: 3 days ago - Pushed: 6 days ago - Stars: 145 - Forks: 36

zarr-developers/blog

Zarr Official Blog

Language: Ruby - Size: 391 KB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 0 - Forks: 4

keller-mark/pizzarr

Slice into Zarr arrays in R 🍕

Language: R - Size: 2.1 MB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 17 - Forks: 1

LDeakin/zarrs

A rust library for the Zarr V3 storage format for multidimensional arrays and metadata

Language: Rust - Size: 1.24 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 63 - Forks: 5

zarr-developers/zarr-python

An implementation of chunked, compressed, N-dimensional arrays for Python.

Language: Python - Size: 14.3 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 1,336 - Forks: 255

grimbough/Rarr

A simple native R reader for Zarr Arrays

Language: C - Size: 1.35 MB - Last synced: 6 days ago - Pushed: 8 days ago - Stars: 24 - Forks: 4

google/xarray-beam

Distributed Xarray with Apache Beam

Language: Python - Size: 271 KB - Last synced: 7 days ago - Pushed: about 2 months ago - Stars: 118 - Forks: 10

LDeakin/zarrs_tools

Various tools for creating and manipulating Zarr v3 data with the zarrs rust crate

Language: Rust - Size: 390 KB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 6 - Forks: 0

pangeo-forge/pangeo-forge-recipes

Python library for building Pangeo Forge recipes.

Language: Python - Size: 11 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 112 - Forks: 54

jwodder/zarr-checksum-gallery

Various implementations of Dandi Zarr checksumming

Language: Rust - Size: 486 KB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 1 - Forks: 0

zarr-developers/zarr-specs

Zarr core protocol for storage and retrieval of N-dimensional typed arrays

Size: 2.78 MB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 78 - Forks: 24

xpublish-experiments/Catalog-To-Xpublish

This repository enables one to spin-up a FastAPI/Xpublish server from an Intake or STAC catalog.

Language: Python - Size: 4.01 MB - Last synced: 13 days ago - Pushed: 15 days ago - Stars: 11 - Forks: 0

ome/ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

Language: Python - Size: 737 KB - Last synced: about 9 hours ago - Pushed: 16 days ago - Stars: 136 - Forks: 50

cubed-dev/cubed

Bounded-memory serverless distributed N-dimensional array processing

Language: Python - Size: 9.13 MB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 90 - Forks: 6

ecmwf-lab/climetlab-s2s-ai-challenge

climetlab plugin to access subseasonal to seasonal (S2S) forecasts for the s2s-ai-challenge

Language: Jupyter Notebook - Size: 1.71 MB - Last synced: 17 days ago - Pushed: 8 months ago - Stars: 31 - Forks: 21

djgagne/hagelslag

Hagelslag supports segmentation and tracking of weather fields and scalable verification, including performance diagrams and reliability diagrams.

Language: Jupyter Notebook - Size: 91.3 MB - Last synced: about 12 hours ago - Pushed: 3 months ago - Stars: 67 - Forks: 27

weiji14/zen3geo

The 🌏 data science library you've been waiting for~

Language: Python - Size: 2.27 MB - Last synced: 13 days ago - Pushed: about 1 month ago - Stars: 70 - Forks: 3

Euro-BioImaging/BatchConvert

A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

Language: Python - Size: 10.7 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 13 - Forks: 2

ome/napari-ome-zarr

A napari plugin for zarr backed OME-NGFF images

Language: Python - Size: 117 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 24 - Forks: 20

OSOceanAcoustics/echopype

Enabling interoperability and scalability in ocean sonar data analysis

Language: Python - Size: 95.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 82 - Forks: 65

valeriupredoi/PyActiveStorage

Python implementation of Active Storage

Language: Python - Size: 21.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 2

TGSAI/mdio-python

Cloud native, scalable storage engine for various types of energy data.

Language: Python - Size: 3.48 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 28 - Forks: 10

josephnowak/tensordb

Datastore for Tensors based on Xarray and Zarr

Language: Python - Size: 8.83 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 13 - Forks: 1

hms-dbmi/vizarr

A minimal Zarr image viewer based on Viv.

Language: TypeScript - Size: 21.7 MB - Last synced: 29 days ago - Pushed: 2 months ago - Stars: 101 - Forks: 15

weiji14/foss4g2023oceania

The ecosystem of geospatial machine learning tools in the Pangeo world.

Language: Jupyter Notebook - Size: 1.37 MB - Last synced: 14 days ago - Pushed: about 2 months ago - Stars: 10 - Forks: 0

cgohlke/imagecodecs

Image transformation, compression, and decompression codecs

Language: Cython - Size: 21.9 MB - Last synced: 27 days ago - Pushed: 5 months ago - Stars: 103 - Forks: 19

FrontierDevelopmentLab/sat-extractor

Extract Satellite Imagery from public constellations at scale

Language: Python - Size: 867 KB - Last synced: about 2 hours ago - Pushed: almost 2 years ago - Stars: 74 - Forks: 6

zarr-developers/zarr-illustrations-falk-2022

Illustrations created by Henning Falk for the Zarr community

Language: Shell - Size: 129 MB - Last synced: 6 days ago - Pushed: 6 months ago - Stars: 27 - Forks: 1

CNES/zcollection

Python library allowing to manipulate data splited into a collection of groups stored in Zarr format.

Language: Python - Size: 640 KB - Last synced: 8 days ago - Pushed: 2 months ago - Stars: 12 - Forks: 3

observingClouds/tape_archive_index

Collection of reference files of data archived on 📼 at DKRZ

Language: Python - Size: 59 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 3 - Forks: 1

weiji14/deepicedrain

Mapping and monitoring deep subglacial water activity in Antarctica using remote sensing and machine learning, with ICESat-2!

Language: Jupyter Notebook - Size: 29.6 MB - Last synced: 14 days ago - Pushed: over 1 year ago - Stars: 28 - Forks: 8

nasa-jpl/itslive-py

Python client for ITSLIVE glacier ice velocities.

Language: Python - Size: 2.8 MB - Last synced: 22 days ago - Pushed: 4 months ago - Stars: 11 - Forks: 3

casangi/cngi_prototype 📦

Prototype Development of CNGI

Language: Python - Size: 83.2 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 8 - Forks: 9

gribscan/gribscan

Create indices for GRIB files and provide an xarray interface.

Language: Python - Size: 508 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 9 - Forks: 2

xtensor-stack/xtensor-zarr

Implementation of the Zarr core protocol (version 2 and 3) based on xtensor.

Language: C++ - Size: 243 KB - Last synced: 6 days ago - Pushed: about 2 years ago - Stars: 37 - Forks: 9

linkml/linkml-arrays

Support for N-dimensional arrays in LinkML.

Language: Python - Size: 2.82 MB - Last synced: 30 days ago - Pushed: 2 months ago - Stars: 3 - Forks: 1

ome/omero-cli-zarr

Language: Python - Size: 343 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 15 - Forks: 10

Orion-AI-Lab/mesogeos

A multi-purpose dataset for data-driven wildfire modeling in the Mediterranean. Deep Learning models for wildfire modeling, e.g. danger forecasting, burned area prediction, etc

Language: Jupyter Notebook - Size: 12.4 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 35 - Forks: 7

NCAR/cesm-lens-aws

Examples of analysis of CESM LENS data publicly available on Amazon S3 (us-west-2 region) using xarray and dask

Language: Jupyter Notebook - Size: 20.8 MB - Last synced: 30 days ago - Pushed: 3 months ago - Stars: 38 - Forks: 23

OceanStreamIO/oceanstream

Oceanstream is a Python library which can be used as a CLI tool to process raw acoustic data from echosounders. It uses echopype as a backend. Developed at @pineviewlabs

Language: Python - Size: 224 KB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 3 - Forks: 2

lasersonlab/zappy 📦

Distributed processing with NumPy and Zarr

Language: Python - Size: 106 KB - Last synced: 18 days ago - Pushed: over 5 years ago - Stars: 9 - Forks: 2

constantinpape/z5

Lightweight C++ and Python interface for datasets in zarr and N5 format

Language: C++ - Size: 1.12 MB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 99 - Forks: 23

zarr-developers/zarr-benchmark

Benchmarking the performance of various Zarr implementations, using our perfcapture framework.

Language: Jupyter Notebook - Size: 3.44 MB - Last synced: 6 days ago - Pushed: 6 months ago - Stars: 1 - Forks: 1

clizarraga-UAD7/geo-datascience2

A collection of Python tools and libraries for Geosciences.

Language: Jupyter Notebook - Size: 12.3 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 1

catalystneuro/HDF5Zarr

Reading HDF5 files with Zarr

Language: Python - Size: 168 KB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 9 - Forks: 2

zarr-developers/zarr-logo

Official logos for the Zarr project

Size: 43 KB - Last synced: 6 days ago - Pushed: 6 months ago - Stars: 1 - Forks: 2

RichardScottOZ/Kerchunk-geoh5

Examples of reading data from cloud stored geoh5 / Geoscience Analyst files

Language: Jupyter Notebook - Size: 120 KB - Last synced: 28 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

christophenoel/geozarr-spec 📦

The GeoZarr specification has been transferred to the Zarr-developers repository. This spec aims to provides a geospatial extension to the Zarr specification.

Size: 86.9 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 31 - Forks: 7