hubmapconsortium/portal-ui

HuBMAP Data Portal front end

Language: TypeScript - Size: 31.9 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 13 - Forks: 2

hubmapconsortium/ingest-validation-tools

HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

Language: Python - Size: 5.32 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 8 - Forks: 18

vitessce/vitessce

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

Language: JavaScript - Size: 53.6 MB - Last synced at: 8 days ago - Pushed at: 12 days ago - Stars: 202 - Forks: 46

hms-dbmi/viv

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

Language: JavaScript - Size: 14.8 MB - Last synced at: 10 days ago - Pushed at: 11 days ago - Stars: 303 - Forks: 49

taneishi/GlomerularSegmentation

Glomerular Segmentation in Kidney Tissue Images using U-Net.

Language: Python - Size: 569 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 1

n1ghtf4l1/automatic-dissection

Identify the locations of each functional tissue unit (FTU) in biopsy slides from several different organs.

Language: Jupyter Notebook - Size: 36.9 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

obophenotype/asctb-tables

LinkML schema for ASCB-T tables

Language: Python - Size: 5.16 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

chrise96/Weighted-Masks-Fusion

Weighted Masks Fusion (WMF) - Ensembling for Instance Segmentation.

Language: Python - Size: 1.95 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 0

vitessce/vitessce-data

Utils for loading HuBMAP data formats

Language: Python - Size: 3.94 MB - Last synced at: 6 days ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 4

hubmapconsortium-graveyard/img2zarr 📦

Python utility for converting images to zarr chunked arrays

Language: Python - Size: 20.5 KB - Last synced at: 11 days ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

hubmapconsortium-graveyard/portal-style-guide 📦

Style guide for HuBMAP Portal development.

Language: JavaScript - Size: 6.2 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

Saharsh1005/hubmap-kaggle-competition

Binary segmentation of multi organ tissue units while implementing latest vision transformer architectures

Language: Python - Size: 20.7 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 0

SPARC-FAIR-Codeathon/hubmap-link

HuBMAP & SPARC Linkages

Language: TypeScript - Size: 19.3 MB - Last synced at: 4 days ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

shreshtashetty/Hubmap-Kidney-Segmentation

Semantic Segmentation to identify glomeruli in kidney images

Language: Jupyter Notebook - Size: 28.3 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

nauyan/HuBMAP-HackingtheKidney

Language: Python - Size: 24.4 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

chadrick-kwag/hubmap

kaggle hubmap kidney segmentation code

Language: Jupyter Notebook - Size: 3.15 MB - Last synced at: 12 months ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0