Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: medical-imaging

Repositories

4m4n5/NASDM

Pytorch implementation of NASDM: Nuclei-Aware Semantic Histopathology Image Generation Using Diffusion Models

Language: Jupyter Notebook - Size: 28.3 MB - Last synced: about 5 hours ago - Pushed: about 6 hours ago - Stars: 14 - Forks: 2

BiaPyX/BiaPy

Open source Python library for building bioimage analysis pipelines

Language: Jupyter Notebook - Size: 886 MB - Last synced: about 5 hours ago - Pushed: about 8 hours ago - Stars: 107 - Forks: 27

lasopablo/mercure-motionCorr_nii

ANTs Motion Correction template module implemented on Mercure DICOM server

Language: Python - Size: 811 KB - Last synced: about 8 hours ago - Pushed: about 10 hours ago - Stars: 0 - Forks: 0

vhosouza/invesalius3 Fork of invesalius/invesalius3

3D medical imaging reconstruction software

Language: Python - Size: 253 MB - Last synced: about 10 hours ago - Pushed: 1 day ago - Stars: 2 - Forks: 3

MITK/MITK

The Medical Imaging Interaction Toolkit.

Language: C++ - Size: 236 MB - Last synced: about 10 hours ago - Pushed: about 13 hours ago - Stars: 647 - Forks: 319

asvcode/MedicalImaging

Tutorials that take an in depth look at how to view and manipulate DICOM images and how to get them ready for machine learning

Language: Jupyter Notebook - Size: 81.9 MB - Last synced: 29 days ago - Pushed: about 1 year ago - Stars: 25 - Forks: 6

LLNL/LEAP

comprehensive library of 3D transmission Computed Tomography (CT) algorithms with Python API and fully integrated with PyTorch

Language: Cuda - Size: 10.5 MB - Last synced: about 8 hours ago - Pushed: about 10 hours ago - Stars: 45 - Forks: 5

Project-MONAI/MONAILabel

MONAI Label is an intelligent open source image labeling and learning tool.

Language: Python - Size: 47.7 MB - Last synced: about 24 hours ago - Pushed: 1 day ago - Stars: 545 - Forks: 178

shliamin/Python-DICOM-Processing-And-Segmentation

This repository is dedicated to developing Python tools for processing and segmenting DICOM files, with a focus on 3D visualization techniques to aid in medical imaging analysis.

Language: Jupyter Notebook - Size: 11.7 KB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 0 - Forks: 0

tfmoraes/invesalius3 Fork of invesalius/invesalius3

3D medical imaging reconstruction software

Language: Python - Size: 274 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 2 - Forks: 1

M3DV/RibSeg

[MICCAI'21 & TMI'23] RibSeg Dataset and Point Cloud Baselines for Rib Segmentation from CT Scans

Language: Python - Size: 18.4 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 57 - Forks: 13

SyneRBI/SIRF

Main repository for the CCP SynerBI software

Language: C++ - Size: 9.46 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 57 - Forks: 29

neuroneural/brainchop

Brainchop: In-browser 3D MRI rendering and segmentation

Language: JavaScript - Size: 355 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 232 - Forks: 28

NA-MIC/ProjectWeek

Website for NA-MIC Project Weeks

Language: Python - Size: 1.03 GB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 74 - Forks: 256

BiomedSciAI/fuse-med-ml

A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)

Language: Python - Size: 104 MB - Last synced: 16 days ago - Pushed: 21 days ago - Stars: 126 - Forks: 35

mahmoodlab/CONCH

A vision-language foundation model for computational pathology - Nature Medicine

Language: Python - Size: 1.2 MB - Last synced: about 8 hours ago - Pushed: about 1 month ago - Stars: 141 - Forks: 8

ImagingDataCommons/idc-radiomics-reproducibility

Transparent and Reproducible AI-based Medical Imaging Pipelines Using the Cloud.

Language: Jupyter Notebook - Size: 106 MB - Last synced: about 16 hours ago - Pushed: 1 day ago - Stars: 0 - Forks: 1

aramis-lab/clinicadl

Framework for the reproducible processing of neuroimaging data with deep learning methods

Language: Python - Size: 9.89 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 152 - Forks: 52

JoHof/lungmask

Automated lung segmentation in CT

Language: Python - Size: 2.43 MB - Last synced: 1 day ago - Pushed: about 1 month ago - Stars: 613 - Forks: 144

fahadshamshad/awesome-transformers-in-medical-imaging

A collection of resources on applications of Transformers in Medical Imaging.

Size: 3.92 MB - Last synced: about 23 hours ago - Pushed: 21 days ago - Stars: 1,113 - Forks: 167

fo-dicom/fo-dicom

Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity

Language: C# - Size: 165 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 1,020 - Forks: 630

nroduit/Weasis

Weasis is a DICOM viewer available as a desktop application or as a web-based application.

Language: Java - Size: 28.9 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 734 - Forks: 276

microsoft/dicom-server

OSS Implementation of DICOMweb standard

Language: JavaScript - Size: 23.4 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 431 - Forks: 164

ivmartel/dwv-react

Medical image viewer using DWV (DICOM Web Viewer) and React.

Language: Java - Size: 57.9 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 90 - Forks: 36

dcmjs-org/dcmjs

Javascript implementation of DICOM manipulation

Language: JavaScript - Size: 21.5 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 282 - Forks: 105

fepegar/jvol

JPEG compression for 3D volumes.

Language: Python - Size: 1.77 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 4 - Forks: 0

rapidsai/cucim

cuCIM - RAPIDS GPU-accelerated image processing library

Language: Jupyter Notebook - Size: 23.7 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 310 - Forks: 54

mazurowski-lab/finetune-SAM

This is an official repo for fine-tuning SAM to customized medical images.

Language: Python - Size: 1.72 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 30 - Forks: 4

ivmartel/dwv

DICOM Web Viewer: open source zero footprint medical image library.

Language: JavaScript - Size: 126 MB - Last synced: 6 days ago - Pushed: 13 days ago - Stars: 1,599 - Forks: 583

albarqouni/Deep-Learning-for-Medical-Applications

Deep Learning Papers on Medical Image Analysis

Language: TeX - Size: 84 KB - Last synced: about 9 hours ago - Pushed: about 2 years ago - Stars: 1,534 - Forks: 500

ivmartel/dwv-vue

Medical image viewer using DWV (DICOM Web Viewer) and Vue.js.

Language: Vue - Size: 44.2 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 94 - Forks: 34

avaidyam/ProjectEHR

Language: JavaScript - Size: 39.5 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

Language: Python - Size: 70.2 MB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 669 - Forks: 428

ivmartel/dwv-simplistic

Medical image viewer based on DWV (DICOM Web Viewer) and simple HTML.

Language: JavaScript - Size: 10.1 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 9 - Forks: 8

adalca/neurite

Neural networks toolbox focused on medical image analysis

Language: Python - Size: 776 KB - Last synced: about 18 hours ago - Pushed: 13 days ago - Stars: 316 - Forks: 65

BrownBiomechanics/Autoscoper

Autoscoper is a 2D-3D image registration software package.

Language: C++ - Size: 29.8 MB - Last synced: 4 days ago - Pushed: about 1 month ago - Stars: 7 - Forks: 4

hahnec/rf-ulm

Radio-Frequency Ultrasound Localization Microscopy

Language: Python - Size: 122 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 15 - Forks: 2

cai2r/fastMRI_prostate

A large scale dataset and reconstruction script of both raw prostate MRI measurements and images

Language: Jupyter Notebook - Size: 1.62 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 36 - Forks: 2

Borda/pyImSegm 📦

Image segmentation - general superpixel segmentation & center detection & region growing

Language: Python - Size: 21.8 MB - Last synced: about 20 hours ago - Pushed: over 2 years ago - Stars: 364 - Forks: 74

markmikkelsen/Gannet

Gannet is a free, open-source MATLAB-based software toolkit for analyzing edited 1H magnetic resonance spectroscopy (MRS) data.

Language: MATLAB - Size: 9.97 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 6 - Forks: 12

abidanBrito/visus

GPU-based direct volume renderer.

Size: 1000 Bytes - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 0 - Forks: 0

eigenvivek/DiffDRR

Auto-differentiable digitally reconstructed radiographs in PyTorch

Language: Python - Size: 2.55 GB - Last synced: 4 days ago - Pushed: 5 days ago - Stars: 101 - Forks: 9

openspyrit/spyrit

A Python toolbox for deep image reconstruction, with emphasis on single-pixel imaging.

Language: Python - Size: 7.26 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 29 - Forks: 14

wejpurvis/Lung_Segmentation

Implemented a U-Net CNN to segment lungs from CT scans

Language: Python - Size: 77.2 MB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 0 - Forks: 0

kaapana/kaapana

Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.

Language: Python - Size: 188 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 148 - Forks: 36

yongsongH/AIDSRGAN-MICCAI2022

Official Pytorch Code for "Rethinking Degradation: Radiograph Super-Resolution via AID-SRGAN" - MICCAI 2022 Workshop

Language: Python - Size: 10.9 MB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 13 - Forks: 1

xmindflow/Awesome_Mamba

A Comprehensive Survey of Mamba in Deep Learning

Size: 176 KB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 77 - Forks: 5

FMCalisto/FMCalisto

:crystal_ball: My Personal Open Source'rer Profile

Size: 18.3 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 5 - Forks: 3

fpaupier/cancerous_cells_scans_processing 📦

Predict survival time from PET scans

Language: Python - Size: 30.3 MB - Last synced: 6 days ago - Pushed: over 4 years ago - Stars: 9 - Forks: 6

johnmatzakos/detect-covid-19-in-xray-images

Exploring Deep Learning and Convolutional Neural Networks models in order to detect Covid-19 in x-ray images.

Language: Python - Size: 81.1 KB - Last synced: 6 days ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

jibrel/My-Awesome-healthcare

A curated list of healthcare apps by Yazid Jibrel

Size: 29.3 KB - Last synced: 1 day ago - Pushed: 9 months ago - Stars: 12 - Forks: 1

MedMNIST/MedMNIST

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

Language: Python - Size: 13.6 MB - Last synced: 6 days ago - Pushed: about 1 month ago - Stars: 974 - Forks: 154

jihyeonseong/CardioCaps

Attention-based Capsule Network for Class-Imbalanced Echocardiogram Classification

Language: Python - Size: 75.2 KB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 1 - Forks: 0

Borda/BIRL 📦

BIRL: Benchmark on Image Registration methods with Landmark validations

Language: Python - Size: 8.49 MB - Last synced: 7 days ago - Pushed: over 2 years ago - Stars: 87 - Forks: 26

IAmSuyogJadhav/Brainy

Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.

Language: Python - Size: 195 MB - Last synced: 7 days ago - Pushed: over 1 year ago - Stars: 33 - Forks: 13

seanvelasco/ecg.js

Plot ECG charts using D3.js

Language: TypeScript - Size: 397 KB - Last synced: 7 days ago - Pushed: 10 months ago - Stars: 2 - Forks: 1

Ashutosh27ind/chestXRayImagesAnalysisUsingCNN

Working with Chest X-Ray (CXR) images : Medical Imaging

Language: Jupyter Notebook - Size: 77.7 MB - Last synced: 7 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

cornerstonejs/cornerstoneTools

A framework for tools built on top of Cornerstone.

Language: JavaScript - Size: 63.5 MB - Last synced: 6 days ago - Pushed: 3 months ago - Stars: 572 - Forks: 455

qurit/PyTomography

This repository enables easy and fast medical image reconstruction in Python.

Language: Python - Size: 91.6 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 74 - Forks: 14

tayalmanan28/PANACEA

A web application based on ML model for prediction of disease based on the symptoms provided by the scans, X -rays and other medical data.

Size: 30 MB - Last synced: 7 days ago - Pushed: almost 2 years ago - Stars: 4 - Forks: 1

jinglescode/meditorch

A PyTorch package for biomedical datasets processing, development and testing.

Language: Python - Size: 87.9 MB - Last synced: 7 days ago - Pushed: over 1 year ago - Stars: 8 - Forks: 4

ahmedbesbes/mrnet

Building an ACL tear detector to spot knee injuries from MRIs with PyTorch (MRNet)

Language: Python - Size: 76.4 MB - Last synced: 1 day ago - Pushed: about 3 years ago - Stars: 119 - Forks: 39

RichardObi/ccnet

Official repository of "Towards Learning Contrast Kinetics with Multi-Condition Latent Diffusion Models"

Size: 795 KB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 0 - Forks: 0

RichardObi/frd-score

Compute the Fréchet Radiomics Distance.

Language: Python - Size: 184 KB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 0 - Forks: 0

YUKI-ENT/ENTcapture1

DirectShowビデオデバイスに対応した医療用キャプチャソフトです。RSBaseとの連携を前提としています。

Language: C# - Size: 21 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 0 - Forks: 0

IDU-CVLab/COV19D_3rd

ICASSP 2023: AI-enabled Medical Image Analysis Workshop and Covid-19 Diagnosis Competition (AI-MIA-COV19D): An accurate automated solution for COVID-19 diagnosis using UNet segmentation, lung extraction, and classification framework

Language: Python - Size: 130 KB - Last synced: 8 days ago - Pushed: 4 months ago - Stars: 3 - Forks: 0

Nico-Curti/Deepskin

Wound analysis using smartphone images

Language: Python - Size: 4.15 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 5 - Forks: 0

NKI-AI/direct

Deep learning framework for MRI reconstruction

Language: Python - Size: 32.1 MB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 218 - Forks: 40

mlmed/torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

Language: Jupyter Notebook - Size: 43.8 MB - Last synced: 7 days ago - Pushed: about 2 months ago - Stars: 835 - Forks: 201

mne-tools/mne-cpp

MNE-CPP: A Framework for Electrophysiology

Language: C++ - Size: 349 MB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 148 - Forks: 137

cornerstonejs/cornerstone

JavaScript library to display interactive medical images including but not limited to DICOM

Language: JavaScript - Size: 18 MB - Last synced: 3 days ago - Pushed: 2 months ago - Stars: 2,007 - Forks: 588

ddrous/inverse-problem-vnet

Reconstruction de la densité d’un domaine par un VNET en vue de la détection des tumeurs.

Language: Jupyter Notebook - Size: 68.9 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 2 - Forks: 0

smistad/FAST

A framework for high-performance medical image processing, neural network inference and visualization

Language: C++ - Size: 19.2 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 402 - Forks: 98

HanXinzi-AI/awesome-computer-vision-resources

a collection of computer vision projects&tools. 计算机视觉方向项目和工具集合。

Size: 49.8 MB - Last synced: 1 day ago - Pushed: 3 days ago - Stars: 94 - Forks: 22

ternaus/robot-surgery-segmentation

Wining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge

Language: Jupyter Notebook - Size: 323 MB - Last synced: 7 days ago - Pushed: about 1 month ago - Stars: 617 - Forks: 211

etetteh/OoD_Gen-Chest_Xray

Multi-Domain Balanced Sampling Improves Out-of-Distribution Generalization of Chest X-ray Pathology Prediction Models

Language: Python - Size: 355 KB - Last synced: 7 days ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

databricks-industry-solutions/pixels

Facilitates simple large scale processing of HLS Medical images, documents, zip files. Previously at https://github.com/dmoore247/pixels

Language: Python - Size: 21.3 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 19 - Forks: 12

KidsWithTokens/MedSegDiff

Medical Image Segmentation with Diffusion Model

Language: Python - Size: 3.7 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 923 - Forks: 136

stanfordmlgroup/Auto-Generate-WLs

Code repository supporting the paper "Auto-Generating Weak Labels for Real & Synthetic Data to Improve Label-Scarce Medical Image Segmentation" - MIDL 2024

Language: Jupyter Notebook - Size: 887 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 2 - Forks: 0

wdika/mridc 📦

Data Consistency Toolbox for Magnetic Resonance Imaging

Language: Jupyter Notebook - Size: 12.2 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 37 - Forks: 11

zhangerjun/UNet_model

Python verson of the original unet model. It is reproducible.

Language: Jupyter Notebook - Size: 36 MB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 2 - Forks: 0

LightersWang/Awesome-Active-Learning-for-Medical-Image-Analysis

A paper list of active learning in medical image analysis

Language: Python - Size: 640 KB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 40 - Forks: 2

ivmartel/dwv-jqui

Medical image viewer based on DWV (DICOM Web Viewer) and jQuery UI.

Language: JavaScript - Size: 13 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 17 - Forks: 19

SerdarHelli/Segmentation-of-Teeth-in-Panoramic-X-ray-Image-Using-U-Net

The aim of this study is automatic semantic segmentation in one-shot panoramic x-ray image by using deep learning method with U-Net Model and binary image analysis in order to provide diagnostic information for the management of dental disorders, diseases, and conditions.

Language: Jupyter Notebook - Size: 35.5 MB - Last synced: 7 days ago - Pushed: about 1 year ago - Stars: 111 - Forks: 32