GitHub topics: medical-image-segmentation
adamkurth/understanding-series
This is a series of subrepos where I explore theoretical and practical concepts, algorithms, and techniques used in statistics and machine learning.
Language: Jupyter Notebook - Size: 22.9 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 2 - Forks: 0
open-mmlab/mmsegmentation
OpenMMLab Semantic Segmentation Toolbox and Benchmark.
Language: Python - Size: 43.2 MB - Last synced at: 3 days ago - Pushed at: about 1 year ago - Stars: 9,198 - Forks: 2,752
frankkramer-lab/MIScnn
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
Language: Python - Size: 133 MB - Last synced at: 2 days ago - Pushed at: over 2 years ago - Stars: 419 - Forks: 116
caumente/AUDIT
AUDIT - Analysis & Evaluation Dashboard of Artificial Intelligence
Language: Jupyter Notebook - Size: 431 MB - Last synced at: about 2 hours ago - Pushed at: about 4 hours ago - Stars: 3 - Forks: 0
ChenLiu-1996/CUTS
[MICCAI 2024] CUTS: A Deep Learning and Topological Framework for Multigranular Unsupervised Medical Image Segmentation
Language: Python - Size: 56.2 MB - Last synced at: 4 days ago - Pushed at: 3 months ago - Stars: 42 - Forks: 3
WZH0120/SAM2-UNet
[ICCVW 2025] SAM2-UNet: Segment Anything 2 Makes Strong Encoder for Natural and Medical Image Segmentation
Language: Python - Size: 3.14 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 403 - Forks: 45
xmindflow/Awesome-Implicit-Neural-Representations-in-Medical-imaging
[ICCV 2023] A curated list of resources on implicit neural representations in Medical Imaging
Size: 1.44 MB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 218 - Forks: 18
PaddlePaddle/PaddleSeg
Easy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.
Language: Python - Size: 342 MB - Last synced at: 5 days ago - Pushed at: 3 months ago - Stars: 9,151 - Forks: 1,702
77even/Fast-nnUNet
This is the official repository for Fast-nnUNet, a new fast model inference framework based on the nnUNet framework implementation.
Language: Python - Size: 6.06 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 8 - Forks: 1
computational-cell-analytics/medico-sam
Segment Anything for Medical Imaging
Language: Python - Size: 648 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 25 - Forks: 1
mkang315/MCTSeg
[Preprint] Official implementation of "A Multimodal Feature Distillation with CNN-Transformer Network for Brain Tumor Segmentation with Incomplete Modalities".
Language: Python - Size: 95.7 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 5 - Forks: 1
FengheTan9/Mobile-U-ViT
[ACM MM 2025] Mobile U-ViT: Revisiting large kernel and U-shaped ViT for efficient medical image segmentation
Language: Python - Size: 6.57 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 15 - Forks: 3
xmindflow/Awesome-Transformer-in-Medical-Imaging
[MedIA Journal] An ultimately comprehensive paper list of Vision Transformer/Attention, including papers, codes, and related websites
Size: 354 KB - Last synced at: 9 days ago - Pushed at: almost 2 years ago - Stars: 207 - Forks: 25
Amulya-Yadav/U-Net-PyTorch
π§ Implement U-Net in PyTorch for effective binary image segmentation, focusing on brain tumor detection with a complete pipeline from data prep to evaluation.
Language: Jupyter Notebook - Size: 187 KB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 0 - Forks: 0
PhysicsResearch/AMIGOpy
Software for research and education in medical physics
Language: Python - Size: 10 MB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 0
fahadshamshad/awesome-transformers-in-medical-imaging
A collection of resources on applications of Transformers in Medical Imaging.
Size: 3.92 MB - Last synced at: 11 days ago - Pushed at: over 1 year ago - Stars: 1,265 - Forks: 193
mkang315/ASF-YOLO
[IMAVIS] Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
Language: Python - Size: 253 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 95 - Forks: 7
mazurowski-lab/SlicerSegmentHumanBody
3D Slicer extension for SegmentAnyBone developed by Mazurowski Lab
Language: Python - Size: 59 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 8 - Forks: 4
steve-zeyu-zhang/Awesome-3D-Medical-Imaging-Segmentation
3D Medical Imaging Segmentation: A Comprehensive Survey
Size: 4.75 MB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 29 - Forks: 0
Jonghwan-dev/Awesome-Segmentation-in-Medical
Welcome, Awesome-segmentation-in-medical project. This repo is robust, reproducible, and fair benchmarking framework for breast ultrasound (BUS) image segmentation. Features 10+ models (UNet, UNet++, TransUnet, SwinUnet etc.), 5+ datasets, and strict data separation to prevent test set leakage.
Language: Python - Size: 1.24 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0
FengheTan9/MobileUtr
Official Pytorch Code base for "MobileUtr: Revisiting the relationship between light-weight CNN and Transformer for efficient medical image segmentation"
Size: 860 KB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 31 - Forks: 1
FengheTan9/Hi-End-MAE
[MedIA 2025] Hi-End-MAE: Hierarchical encoder-driven masked autoencoders are stronger vision learners for medical image segmentation
Language: Python - Size: 2.28 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 15 - Forks: 4
simonwinther/RARE-UNet
This repository features RARE-UNet β a resolution-aware 3D U-Net for adaptive medical segmentation. It uses multi-scale entry blocks and resolution-based routing to dynamically adjust the inference path to input resolution. Combined with consistency-based training, RARE-UNet delivers accurate, efficient segmentation across resolutions.
Language: Python - Size: 1.38 MB - Last synced at: 15 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0
givkashi/Awesome-unet-like-transformers
Awesome UNet with Transformer
Size: 24.4 KB - Last synced at: 12 days ago - Pushed at: over 2 years ago - Stars: 69 - Forks: 2
AITricia/nnunet-cli
CLI tool for preparing datasets for nnU-Net v2 segmentation
Language: Python - Size: 45.9 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
gndlwch2w/spc-demo
The demo page of "Style-Aware Blending and Prototype-Based Cross-Contrast Consistency for Semi-Supervised Medical Image Segmentation".
Language: HTML - Size: 8.63 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
gndlwch2w/spc-code
The official codes for the work "Style-Aware Blending and Prototype-Based Cross-Contrast Consistency for Semi-Supervised Medical Image Segmentation".
Language: Python - Size: 2.61 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
jeya-maria-jose/UNeXt-pytorch
Official Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network", MICCAI 2022
Language: Python - Size: 604 KB - Last synced at: 28 days ago - Pushed at: almost 2 years ago - Stars: 539 - Forks: 80
mazurowski-lab/SlicerSegmentWithSAM
3D Slicer extension for Segment Anything Model (SAM) developed by Meta
Language: Python - Size: 667 KB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 63 - Forks: 7
Seym0n/cv-project-ss25
Repository of the Computer Vision group project of the summer term 2025 at University of Cologne
Language: Jupyter Notebook - Size: 134 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
kaledhoshme123/kaledhoshme123
Size: 54.7 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
abdur75648/Echo-DND
Official implementation of Echo-DND: A Dual Noise Diffusion Model for Robust and Precise Left Ventricle Segmentation in Echocardiography
Language: Python - Size: 1.41 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 5 - Forks: 3
eutrizer13/unet_zoo
Explore UNet Zoo, a PyTorch library for various UNet models in medical image segmentation. Simplify your experiments with a unified API. ππ
Language: Python - Size: 328 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
irfanfadhullah/unet_zoo
UNet Zoo: A PyTorch library for diverse UNet architectures, inspired by timm. Provides a unified API for easy model creation, training, and experimentation in image segmentation.
Language: Python - Size: 360 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
Rubics-Xuan/TransBTS
This repo provides the official code for : 1) TransBTS: Multimodal Brain Tumor Segmentation Using Transformer (https://arxiv.org/abs/2103.04430) , accepted by MICCAI2021. 2) TransBTSV2: Towards Better and More Efficient Volumetric Segmentation of Medical Images(https://arxiv.org/abs/2201.12785).
Language: Python - Size: 70.7 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 414 - Forks: 87
FengheTan9/LLM4Seg
[MICCAI 2025] Official code for "Pre-Trained LLM is a Semantic-Aware and Generalizable Segmentation Booster"
Language: Python - Size: 1.28 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 19 - Forks: 2
nassersaber/Echo-DND
Echo-DND provides a robust solution for segmenting the left ventricle in echocardiograms, overcoming challenges like noise and low contrast. This repository includes code and models to help researchers and practitioners implement the dual noise diffusion approach. ππ»
Language: Python - Size: 1.4 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
Danialmoa/YoloSAM
This repo offers a streamlined segmentation pipeline combining YOLO for region prompting with SAM for high-resolution mask generation β tailored for medical imaging. Itβs lightweight, adaptable, and ideal for tasks like lesion or scar localization and segmentation.
Language: Python - Size: 1.32 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 2 - Forks: 0
wurenkai/UltraLight-VM-UNet
[Patterns (Cell subsidiary)] The official code for "UltraLight VM-UNet: Parallel Vision Mamba Significantly Reduces Parameters for Skin Lesion Segmentation".
Language: Python - Size: 50.8 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 292 - Forks: 40
HiLab-git/WSL4MIS
Scribbles or Points-based weakly-supervised learning for medical image segmentation, a strong baseline, and tutorial for research and application.
Language: Python - Size: 231 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 229 - Forks: 34
MIC-DKFZ/MedNeXt
[MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.
Language: Python - Size: 551 KB - Last synced at: 2 months ago - Pushed at: 10 months ago - Stars: 410 - Forks: 42
DengPingFan/PraNet
PraNet: Parallel Reverse Attention Network for Polyp Segmentation, MICCAI 2020 (Oral). Code using Jittor Framework is available.
Language: Python - Size: 12.9 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 496 - Forks: 127
amir-aghdam/3D-UNet
A pytorch implementation of 3D UNet for 3D MRI Segmentation.
Language: Python - Size: 173 KB - Last synced at: 2 months ago - Pushed at: over 3 years ago - Stars: 69 - Forks: 17
zekikus/MedSegBench
[pip install medsegbench] 35x Standardized Medical Segmentation Datasets from Different Data Modalities
Language: Python - Size: 204 KB - Last synced at: 2 months ago - Pushed at: 9 months ago - Stars: 20 - Forks: 2
frankkramer-lab/miseval
a metric library for Medical Image Segmentation EVALuation
Language: Jupyter Notebook - Size: 665 KB - Last synced at: 2 months ago - Pushed at: 11 months ago - Stars: 117 - Forks: 25
xmindflow/TransCeption
Official code for Enhancing Medical Image Segmentation with TransCeption: A Multi-Scale Feature Fusion Approach
Language: Jupyter Notebook - Size: 26.3 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 50 - Forks: 4
psweens/Predict-RSOM-ROI
Script to run train 3D CNN to predict tumour region-of-interest from 3D RSOM images.
Language: Python - Size: 414 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
JZK00/TV-SAM
Code for TV-SAM, a novel zero-shot segmentation algorithm for multimodal medical images.
Size: 8.47 MB - Last synced at: about 1 month ago - Pushed at: 12 months ago - Stars: 21 - Forks: 2
FengheTan9/CMU-Net
[ISBI 2023] Official Pytorch implementation of "CMU-Net: A Strong ConvMixer-based Medical Ultrasound Image Segmentation Network"
Language: Python - Size: 242 KB - Last synced at: 28 days ago - Pushed at: 9 months ago - Stars: 80 - Forks: 5
JesusGuzmanMX/SYSCARDIO
Part of Intelligent system for assisted medical diagnosis (SYSCARDIO)
Language: Python - Size: 39.4 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
bwittmann/vesselFM
A foundation model for universal 3D blood vessel segmentation. Paper accepted @ CVPR25.
Language: Python - Size: 14.4 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 65 - Forks: 4
gndlwch2w/msvm-unet
The official codes for the work "MSVM-UNet: Multi-Scale Vision Mamba UNet for Medical Image Segmentation".
Language: Python - Size: 728 KB - Last synced at: 3 months ago - Pushed at: 10 months ago - Stars: 53 - Forks: 9
HySonLab/LightMed
Light-weight Medical Image Segmentation
Language: Python - Size: 611 KB - Last synced at: about 2 months ago - Pushed at: 4 months ago - Stars: 5 - Forks: 2
xmindflow/DAEFormer
[MICCAI 2023] DAE-Former: Dual Attention-guided Efficient Transformer for Medical Image Segmentation
Language: Python - Size: 207 KB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 116 - Forks: 14
black0017/MedicalZooPytorch
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
Language: Python - Size: 61.4 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 1,830 - Forks: 302
han-liu/awesome-missing-modality-for-medical-images
A comprehensive review of techniques to address the missing-modality problem for medical images
Size: 82 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 54 - Forks: 3
xmindflow/cenet
[MICCAI 2025] CENet: Context Enhancement Network for Medical Image Segmentation
Size: 16.6 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
mmu-dermatology-research/multimodal-grf
Source code for the paper: "Gaussian Random Fields as an Abstract Representation of Patient Metadata for Multimodal Medical Image Segmentation"
Language: Python - Size: 34.2 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
PhamTrinhDuc/3D-Unet-Image-Segmentation
Language: Jupyter Notebook - Size: 176 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0
safinal/teeth-segmentation
Solution for the Second Challenge of the First Phase in the Rayan International AI Contest: Teeth Segmentation.
Size: 395 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
FengheTan9/MambaMIM
[MedIA'25] MambaMIM: Pre-training Mamba with State Space Token Interpolation and its Application to Medical Image Segmentation
Language: Python - Size: 2.47 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 26 - Forks: 1
ai4colonoscopy/PraNet-V2
PraNet-V2: Upgrading PraNet from binary (V1) to multi-class (V2) segmentation . Support both Jittor & PyTorch DL frameworks.
Language: Python - Size: 2.77 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 6 - Forks: 1
mmu-dermatology-research/hardnet-cws
Source code for the paper: "An Enhanced Harmonic Densely Connected Hybrid Transformer Network Architecture for Chronic Wound Segmentation Utilising Multi-Colour Space Tensor Merging"
Language: Python - Size: 77.1 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
himashi92/Co-Manifold
Official PyTorch implementation for Co-Manifold Learning for Semi-supervised Medical Image Segmentation
Language: Python - Size: 438 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 3 - Forks: 1
luiserrador/IndVertSeg_VerSe
Iterative Vertebrae Segmentation - VerSe dataset
Language: Python - Size: 161 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 9 - Forks: 1
mmu-dermatology-research/multimodal-hardnet
Source code for the paper: "Multimodal HarDNet for Enhanced Weakly Supervised Chronic Wound Segmentation"
Size: 0 Bytes - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
adigasu/GeoLS
Adding Image-context in the Label Smoothing process via Geodesic distance
Language: Python - Size: 2.39 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 5 - Forks: 1
NITR098/U-ViL
U-ViL: A U-shaped Vision-LSTM Framework for Cardiac Image Segmentation
Language: Python - Size: 8.56 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
wurenkai/MHA-UNet
[arXiv] The official code for "Only Positive Cases: 5-fold High-order Attention Interaction Model for Skin Segmentation Derived Classification".
Language: Python - Size: 17.6 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 32 - Forks: 2
leiluk1/gaze-based-segmentation
Code release for "Gaze-Assisted Medical Image Segmentation" [AIM-FM @ NeurIPS, 2024]
Language: Jupyter Notebook - Size: 62.1 MB - Last synced at: about 1 month ago - Pushed at: 11 months ago - Stars: 12 - Forks: 0
havelhakimi/IterMiunet
Checkpoints to reproduce results for the paper "IterMiUnet: A lightweight architecture for automatic blood vessel segmentation" accepted in Multimedia Tools and Applications 2023
Language: Jupyter Notebook - Size: 70.7 MB - Last synced at: about 2 months ago - Pushed at: 11 months ago - Stars: 10 - Forks: 0
DebeshJha/MDNet
Abdominal Organ Segmentation using Multi Decoder Network (MDNet) [Accepted at ICASSP 2025]
Language: Python - Size: 1.6 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 7 - Forks: 1
pashtari/deconver
Official PyTorch Implementation of "Deconver: A Deconvolutional Network for Medical Image Segmentation"
Language: Python - Size: 20.5 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 4 - Forks: 0
HiLab-git/WORD
[MedIA2022]WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image
Language: Python - Size: 48.7 MB - Last synced at: 4 months ago - Pushed at: 12 months ago - Stars: 158 - Forks: 19
saadwazir/HistoSeg
HistoSeg is an Encoder-Decoder DCNN which utilizes the novel Quick Attention Modules and Multi Loss function to generate segmentation masks from histopathological images with greater accuracy. This repo contains the code to Test and Train the HistoSeg
Language: Python - Size: 22.8 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 23 - Forks: 5
yuhui-zh15/TransSeg
Official Code Release for "Adapting Pre-trained Vision Transformers from 2D to 3D through Weight Inflation Improves Medical Image Segmentation" (ML4H 2022)
Language: Python - Size: 696 KB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 48 - Forks: 7
zh320/medical-segmentation-pytorch
PyTorch implementation of medical semantic segmentations models, e.g. UNet, UNet++, DUCKNet, ResUNet, ResUNet++, and support knowledge distillation, distributed training, Optuna etc.
Language: Python - Size: 71.3 KB - Last synced at: 5 months ago - Pushed at: 6 months ago - Stars: 12 - Forks: 4
TimKong21/Polyp-Segmentation
Polyp segmentation tool utilizing U-Net for accurate medical image analysis, designed to enhance early detection and diagnosis of colorectal cancer. Features a user-friendly Streamlit web app for easy image processing and analysis, leveraging the Kvasir-SEG dataset for improved healthcare outcomes.
Language: Jupyter Notebook - Size: 200 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 4
GewelsJI/VPS
Official website for "Video Polyp Segmentation: A Deep Learning Perspective (MIR 2022)"
Language: Python - Size: 227 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 190 - Forks: 30
givkashi/Focal-Unet
Focal-Unet: Unet-like Focal Modulation for Medical Image Segmentation https://arxiv.org/abs/2212.09263
Language: Python - Size: 1.71 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 40 - Forks: 8
plemeri/UACANet
Official PyTorch implementation of UACANet: Uncertainty Augmented Context Attention for Polyp Segmentation (ACMMM 2021)
Language: Python - Size: 482 KB - Last synced at: 3 months ago - Pushed at: almost 3 years ago - Stars: 154 - Forks: 47
mahshid1378/MMSegmentation
OpenMMLab Semantic Segmentation Toolbox and Benchmark.
Language: Python - Size: 32.3 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
cwangrun/BowelNet
[TMI 2022] BowelNet: Joint Semantic-Geometric Ensemble Learning for Bowel Segmentation from Both Partially and Fully Labeled CT Images
Language: Python - Size: 3.75 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 15 - Forks: 2
DianaNerualNetwork/SegResearchToolkit
A High-Efficient Research Development Toolkit for Image Segmentation Based on Pytorch.
Language: Python - Size: 3.11 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 8 - Forks: 0
AdrianGraumnitz/Medical_Segmantion_PyTorch-MONAI
Medical-Heart-Segmentation-Application
Language: Jupyter Notebook - Size: 8.11 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
anthonyweidai/SvANet
Official implementation of "Exploiting Scale-Variant Attention for Segmenting Small Medical Objects"
Language: Python - Size: 7.24 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 47 - Forks: 2
BWGZK/CycleMix
[CVPR 2022] CycleMix: A Holistic Strategy for Medical Image Segmentation from Scribble Supervision
Language: Python - Size: 104 MB - Last synced at: 5 months ago - Pushed at: about 3 years ago - Stars: 94 - Forks: 16
ITISFoundation/osparc-iseg
The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the efficient, fast, and flexible generation of anatomical models from various types of imaging data
Language: C++ - Size: 8.65 MB - Last synced at: 5 months ago - Pushed at: over 2 years ago - Stars: 48 - Forks: 15
nikhilroxtomar/TGANet
TGANet: Text-guided attention for improved polyp segmentation [Early Accepted & Student Travel Award at MICCAI 2022]
Language: Python - Size: 1.12 MB - Last synced at: 5 months ago - Pushed at: over 3 years ago - Stars: 73 - Forks: 10
mckellwoodland/ood_translation
This repository contains the code utilized to translate OOD detection into clinical applications.
Language: Python - Size: 31.3 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
HiLab-git/ACELoss
Implementations of "Learning Euler's Elastica Model for Medical Image Segmentation"
Language: Python - Size: 2.49 MB - Last synced at: 5 months ago - Pushed at: over 4 years ago - Stars: 74 - Forks: 12
moucheng2017/MisMatch-Semi-Seg
[MIDL 2022 Oral] Learning Morphological Feature Perturbations for Calibrated Semi Supervised Segmentation
Language: Jupyter Notebook - Size: 213 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 23 - Forks: 0
Luoxd1996/MSHub
MSHub: Medical Image Segmentation Hub with Pre-trained nnUNets
Size: 85 KB - Last synced at: 3 months ago - Pushed at: 6 months ago - Stars: 22 - Forks: 0
han-liu/crossmoda2023 Fork of MedICL-VU/crossmoda2023
π1st place in the MICCAI challenge CrossMoDA 2023 (unsupervised domain adaptation for medical images)
Language: Python - Size: 43.8 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 0
MedICL-VU/crossmoda2023
π1st place in the MICCAI challenge CrossMoDA 2023
Language: Python - Size: 43.7 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 14 - Forks: 3
920232796/MedicalSeg
3D Medical Image Segmentation ModelsοΌιζεη§ε»ε¦εΎεεε²ζ¨‘εηε°ζ‘ζΆοΌδΈ»θ¦ζ―3DοΌζη»ζ΄ζ°...
Language: Python - Size: 441 KB - Last synced at: 5 months ago - Pushed at: over 3 years ago - Stars: 82 - Forks: 12
mohammadhashemii/CMR_Cardiac_Coverage_Control
PyTorch code for Automated Cardiac Coverage Assessment in Cardiovascular Magnetic Resonance Imaging using an Explainable Salient Region Detection Model
Language: Python - Size: 15.3 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1
wurenkai/UWF-RHS-Dataset-and-MASNet
[IEEE JBHI] The official code for "Automatic Segmentation of Hemorrhages in the Ultra-wide Field Retina: Multi-scale Attention Subtraction Networks and An Ultra-wide Field Retinal Hemorrhage Dataset".
Language: Python - Size: 54.7 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 8 - Forks: 0
vpulab/med-sam-brain
SAM Adaptation for mp-MRI Brain Tumor Segmentation
Language: Python - Size: 375 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 11 - Forks: 1
TapasKumarDutta1/HuBMAP
Blood Vessel Instance Segmentation in Human Kidney Histology Slides: A Repository for Comprehensive Whole-Slide Image Analysis
Language: Jupyter Notebook - Size: 2.46 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 1
