ikhaqani/spheroid-seg

Reproducible MONAI bundle for spheroid segmentation (U-Net baseline + SMP-ResNet50), with letterbox, k-fold CV, and TTA; paper-ready configs.

Language: Python - Size: 84 KB - Last synced at: about 11 hours ago - Pushed at: about 11 hours ago - Stars: 0 - Forks: 0

Project-MONAI/monai-deploy-app-sdk

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

Language: Jupyter Notebook - Size: 34.1 MB - Last synced at: about 20 hours ago - Pushed at: 1 day ago - Stars: 108 - Forks: 54

Project-MONAI/MONAILabel

MONAI Label is an intelligent open source image labeling and learning tool.

Language: Python - Size: 53.3 MB - Last synced at: about 6 hours ago - Pushed at: 24 days ago - Stars: 751 - Forks: 234

DCBIA-OrthoLab/SlicerAutomatedDentalTools

A 3D Slicer extension to use AMASSS, ALI-CBCT and ALI-IOS

Language: Python - Size: 21.9 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 123 - Forks: 30

Project-MONAI/MONAI

AI Toolkit for Healthcare Imaging

Language: Python - Size: 68 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 6,775 - Forks: 1,246

project-lighter/lighter

Streamline deep learning experiments using config files

Language: Python - Size: 6.76 MB - Last synced at: 4 days ago - Pushed at: about 2 months ago - Stars: 64 - Forks: 7

SudoSuOps/trustcat

Language: HTML - Size: 3.03 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0

Project-MONAI/GenerativeModels 📦

MONAI Generative Models makes it easy to train, evaluate, and deploy generative models and related applications

Language: Jupyter Notebook - Size: 13.9 MB - Last synced at: 18 days ago - Pushed at: about 1 year ago - Stars: 701 - Forks: 102

thildebrant/tbi

Language: Python - Size: 905 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

CCIG-Champalimaud/adell-mri

A deep learning model and training/testing/inference library in PyTorch for segmentation, classification, object detection and self-supervised learning using radiology data.

Language: Python - Size: 21.9 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 0

ciroraggio/AugmentedDataLoader

Medical image augmentation tool that can be integrated with Pytorch & MONAI.

Language: Python - Size: 4.23 MB - Last synced at: 19 days ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0

KitwareMedical/ITKPOCUS

An open source library for streaming and preprocessing point-of-care ultrasound video.

Language: Jupyter Notebook - Size: 75.5 MB - Last synced at: about 1 month ago - Pushed at: almost 3 years ago - Stars: 23 - Forks: 5

davidiommi/Pytorch--3D-Medical-Images-Segmentation--SALMON 📦

Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.

Language: Python - Size: 15.4 MB - Last synced at: 8 days ago - Pushed at: almost 4 years ago - Stars: 122 - Forks: 27

mdciri/teeth-segmentation

teeth segmentation using pytorch and monai

Language: Python - Size: 813 KB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 22 - Forks: 5

Project-MONAI/tutorials

MONAI Tutorials

Language: Jupyter Notebook - Size: 302 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2,126 - Forks: 739

Project-MONAI/monai-deploy

MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.

Language: Shell - Size: 221 MB - Last synced at: 3 days ago - Pushed at: 6 months ago - Stars: 105 - Forks: 24

hase3b/BONBID-HIE-Segmentation

This repository implements a 3D U-Net model for segmenting HIE lesions in neonatal MRI scans, exploring various loss functions including Dice, Dice-Focal, Tversky, Hausdorff Distance, and hybrid loss functions. BONBID-HIE dataset is used for this study.

Language: Jupyter Notebook - Size: 3.39 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

neviektripoli/popcorn-lung-xray-pytorch-monai

A deep learning classifier built with PyTorch and MONAI to detect Popcorn Lung (Bronchiolitis Obliterans) from chest X-ray images. This binary classifier uses a fine-tuned ResNet18 model includes full training and evaluation pipelines and is designed to be Google Colab-ready for rapid prototyping and testing in medical imaging research.

Language: Python - Size: 6.84 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

Project-MONAI/research-contributions

Implementations of recent research prototypes/demonstrations using MONAI.

Language: Python - Size: 25.6 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1,109 - Forks: 351

creatis-myriad/ASCENT

cardiAc ultrasound Segmentation & Color-dopplEr dealiasiNg Toolbox (ASCENT)

Language: Python - Size: 604 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 32 - Forks: 3

bruAristimunha/Synthetic-Sleep-EEG-Signal-Generation-using-Latent-Diffusion-Models 📦

Code for the paper published in Deep Generative Models for Health Workshop at the Neurips 2023.

Language: Python - Size: 17 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 48 - Forks: 8

Warvito/generative_chestxray

Repository to train Latent Diffusion Models on Chest X-ray data (MIMIC-CXR) using MONAI Generative Models

Language: Python - Size: 164 KB - Last synced at: 4 months ago - Pushed at: about 2 years ago - Stars: 58 - Forks: 10

Ribin-Baby/brats_mri_generative_diffusion_monai

Synthetic MRI data generation and Tumor segmentation using Monai

Language: Jupyter Notebook - Size: 40.3 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

Project-MONAI/SlicerMONAIViz

MONAIViz - 3D Slicer Extension

Language: Python - Size: 1.75 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 24 - Forks: 8

bhimrazy/lung-tumours-segmentation

Empowering 3D Lung Tumour Segmentation with MONAI

Language: Jupyter Notebook - Size: 1.55 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 1

antonioscardace/Tina

Model for Identification of Alzheimer's Disease by Brain MRI.

Language: Jupyter Notebook - Size: 129 MB - Last synced at: 5 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

realjules/monitor.ai

monitor.ai: Non-intrusive monitoring for FDA-approved medical AI, helping healthcare organizations ensure safety and compliance without modifying validated models.

Language: Jupyter Notebook - Size: 163 MB - Last synced at: 5 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

AdrianGraumnitz/Medical_Segmantion_PyTorch-MONAI

Medical-Heart-Segmentation-Application

Language: Jupyter Notebook - Size: 8.11 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

TankEngine-ish/ct_scan_human_organs_monai_segmentation

AI powered segmentation of human organs from CT images

Language: Jupyter Notebook - Size: 3.36 MB - Last synced at: 5 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1

amrzhd/MRISkullStripping

Developing a UNet3D model for accurate MRI skull stripping using the Calgary Campinas 359 dataset, enhancing neuroimaging preprocessing workflows.

Language: Jupyter Notebook - Size: 60.5 KB - Last synced at: 4 months ago - Pushed at: 10 months ago - Stars: 94 - Forks: 2

ersinerzurum/MONAI

2D-3D segmentation using monai

Language: Jupyter Notebook - Size: 34.9 MB - Last synced at: 4 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

KooshaYeganeh/rms-cancer

Language: SCSS - Size: 22.1 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

arkanandi/Cardiac_Segmentation_ACDC

Deep learning based cardiac segmentation

Language: Python - Size: 23.4 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 5 - Forks: 0

pycadd/YouTube-Tutorials

All the code used in our YouTube videos (starting from 2024 videos) can be found here.

Language: Python - Size: 2.03 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 10 - Forks: 3

pooya-mohammadi/pooya-mohammadi

This is Pooya Mohammadi, Open Source Enthusiast, AI Developer & Researcher

Size: 35.2 KB - Last synced at: 5 months ago - Pushed at: 10 months ago - Stars: 28 - Forks: 0

dyollb/segmantic

Semantic segmentation and image-to-image translation based on AI

Language: Python - Size: 8.12 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 3

skyous779/MixUNETR

Language: Python - Size: 3.87 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

kevinhongzl/medaset

A collection of pre-built dataset classes for medical datasets.

Language: Python - Size: 116 KB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

AGnias47/brats-challenge-cis-5528

Brain Tumor Segmentation Pipeline for BraTS Challenge

Language: Python - Size: 18.6 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 2 - Forks: 1

KaranAnchan/Unetr_3D_Abdomen_Segmentation

Abdomen 3D Segmentation Using UNETR: Tool for segmenting abdominal organs using the UNETR model. Combines Transformers with CNNs for precise 3D segmentation. Dive into medical imaging! 🏥✨🔍

Language: Python - Size: 2.38 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

JohnMasoner/MedicalZoo

A General Medical Image Segmentation Framework.(Multi-Modal, Mono-Modal, 2D, 3D)

Language: Python - Size: 80.1 KB - Last synced at: 7 days ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 0

mikami520/DeepAtlas-Webpage

Project Webpage for Deep Atlas Paper

Language: JavaScript - Size: 9.39 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ytl0623/monai_wholeBody_ct_segmentation

monai_wholeBody_ct_segmentation

Language: Jupyter Notebook - Size: 234 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Lee-Gihun/MEDIAR

(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"

Language: Python - Size: 15 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 112 - Forks: 21

bmwas/generativebrainapi

A microservice to expose a latent diffusion model for 3D Brain T1-weighted Image generation

Language: Python - Size: 39.1 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

MartinKalema/RSNA-Abdominal-Trauma-Detection

Abdominal Trauma Detection Model using MONAI.

Language: Jupyter Notebook - Size: 355 KB - Last synced at: 29 days ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 2

iremcetin/Attention_generation

Generating attention maps from resnet50 and densenet using ACDC and EMIDEC dataset

Language: Jupyter Notebook - Size: 3.28 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

KCL-BMEIS/VS_Seg

Automatic Segmentation of Vestibular Schwannoma with MONAI (PyTorch)

Language: Python - Size: 17 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 38 - Forks: 8

Rim-chan/SpaceNet7-Buildings-Detection

Building detection from the SpaceNet dataset using UNet.

Language: Python - Size: 1.14 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 9 - Forks: 3

aaronsossin/Cannabis-MRI-Machine-Learning

Applying CNNs, Decoders, and Transfer Learning to distinguish the MRIs of heavy cannabis users vs. controls

Language: TeX - Size: 523 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0

VemundFredriksen/SynthLung

Project for creating synthetic tumor images from existing source images to train neural networks for lung tumor segmentation

Language: Python - Size: 65.4 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

bbabina/Spleen-Segmentation-using-Monai-and-Pytorch

Semantic Segmentation of Spleen using UNET

Language: Jupyter Notebook - Size: 116 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

kim1339/Medical-Image-Analysis

curriculum development ideas for computational biology internship and teaching assistantship @ AI4ALL

Size: 3.42 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

conflick0/CardiacSeg

cardiac segmentation

Language: Jupyter Notebook - Size: 237 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

conflick0/CardiacLab

cardiac segmentation with 3d slicer

Language: Python - Size: 8.2 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

davidiommi/Ensemble-Segmentation 📦

Monai-pytorch based segmentantion with ensemble training for 3D medical images

Language: Python - Size: 180 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 10 - Forks: 1

polejowska/LCBSI

Leukocytes (WBCs) subtypes classification from blood smear images using Vision Transformers from Hugging Face and DenseNet artificial neural network from MONAI.

Language: Jupyter Notebook - Size: 11.3 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Project-Strix/MONAI_EX

An extended version of official MONAI library

Language: Python - Size: 313 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 2

Jianningli/skullVAE

training β-VAE by Aggregating a Learned Gaussian Posterior with a Decoupled Decoder

Language: Python - Size: 37.6 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

soumbane/SelfDistillSeg

Self-Distillation of U-shaped Networks for 3D Cardiac Image Segmentation with Shape Priors

Language: Python - Size: 107 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

bhoeckendorf/napari-monailabel

MONAI Label client plugin for napari

Language: Python - Size: 307 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 4 - Forks: 0

wiktorowski211/knee-acl-mri

MRI-based semi-automated detection of ACL(Anterior Cruciate Ligament) injury using PyTorch

Language: Python - Size: 22.5 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1

aminbenmansour/automatic-liver-segmentation

using labeled and unlabeled (and doing the labeling manually) data, the data is basically medical files (NIfTI & DICOM images) to ensure a good segmentation of the liver

Language: Jupyter Notebook - Size: 2.54 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 3

Andreater/FTD_CAD

Computer-Aided Diagnosis (CAD) Tool for frontotemporal dementia (FTD) based on Deep Learning and Explainable AI (MD3-Cam). The model uses 3D T1-weighted MRI brain scans. The paper has been published in Life journal.

Language: Python - Size: 1.69 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

Jawher-Ben-Abdallah/Glioblastoma_3D_Segmentation

Glioblastoma 3D Segmentation with nnU-Net and Patch Learning.

Language: Jupyter Notebook - Size: 285 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

Sudhanshu1304/Brain-Tumor-Segmentation

Created a semantic segmentation model using PyTorch framework called MONAI. In this project I have applied various data augmentation technique and have build a UNet deep learning model.

Language: Jupyter Notebook - Size: 4.11 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1

aqntks/brain-seg

Brain Segmentation

Language: Python - Size: 40.3 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0