SimpleITK/SimpleITK

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

Language: SWIG - Size: 23.7 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 954 - Forks: 210

Image-Py/imagepy

Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

Language: Python - Size: 6.28 MB - Last synced at: about 14 hours ago - Pushed at: about 1 year ago - Stars: 1,320 - Forks: 332

InsightSoftwareConsortium/insightsoftwareconsortium.org

Sources for insightsoftwareconsortium.org website

Language: TeX - Size: 10.8 MB - Last synced at: 7 days ago - Pushed at: 15 days ago - Stars: 1 - Forks: 6

loli/medpy

Medical image processing in Python

Language: Jupyter Notebook - Size: 12.5 MB - Last synced at: 10 days ago - Pushed at: 8 months ago - Stars: 598 - Forks: 141

SuperElastix/SimpleElastix 📦

Multi-lingual medical image registration library

Language: SWIG - Size: 19.1 MB - Last synced at: 8 days ago - Pushed at: almost 2 years ago - Stars: 522 - Forks: 149

comic/evalutils

evalutils helps users create extensions for grand-challenge.org

Language: Python - Size: 1.41 MB - Last synced at: about 16 hours ago - Pushed at: about 1 month ago - Stars: 23 - Forks: 9

fitushar/3D-Medical-Imaging-Preprocessing-All-you-need

This Repo Will contain the Preprocessing Code for 3D Medical Imaging

Language: Jupyter Notebook - Size: 43.1 MB - Last synced at: 6 days ago - Pushed at: almost 5 years ago - Stars: 199 - Forks: 36

dave3d/dicom2stl

Python script to extract a STL surface from a DICOM image series.

Language: Python - Size: 11.6 MB - Last synced at: 5 days ago - Pushed at: 9 months ago - Stars: 204 - Forks: 68

Plasma-Blue/mikan-rs

A medical image kit for segmentation metrics evaluation

Language: Rust - Size: 3.35 MB - Last synced at: 15 days ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

hase3b/BONBID-HIE-Segmentation

This repository implements a 3D U-Net model for segmenting HIE lesions in neonatal MRI scans, exploring various loss functions including Dice, Dice-Focal, Tversky, Hausdorff Distance, and hybrid loss functions. BONBID-HIE dataset is used for this study.

Language: Jupyter Notebook - Size: 3.39 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

BrkRaw/brkraw

BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data

Language: Python - Size: 40 MB - Last synced at: 6 days ago - Pushed at: 11 months ago - Stars: 47 - Forks: 29

Angeluz-07/MRI-preprocessing-techniques

Code examples of the free course in Youtube of brain MRI preprocessing techniques in python

Language: Jupyter Notebook - Size: 40.1 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 58 - Forks: 19

woctezuma/playing-with-simpleitk

Playing with SimpleITK and nnU-Net to process data from the CHAOS challenge on Google Colab.

Language: Jupyter Notebook - Size: 29.6 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 10 - Forks: 7

dyollb/segmantic

Semantic segmentation and image-to-image translation based on AI

Language: Python - Size: 8.11 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 1 - Forks: 3

FeTS-AI/LabelFusion

Implementation of various label fusion approaches for medical imaging.

Language: Python - Size: 397 KB - Last synced at: about 1 month ago - Pushed at: almost 2 years ago - Stars: 14 - Forks: 6

CrimsonHemlock/Dicom-Image-Registration-Python

Dicom Image Registration Program in Python using a modified SimpleITK/SimpleElastix module compiled from source

Language: Python - Size: 1.32 MB - Last synced at: 11 months ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

dyollb/sitk-cli

Wrap SimpleITK functions as command lines

Language: Python - Size: 109 KB - Last synced at: 20 days ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

SimpleITK/SimpleITK-Notebooks Fork of InsightSoftwareConsortium/SimpleITK-Notebooks

ipython notebooks for learning how to use SimpleITK

Size: 16.3 MB - Last synced at: about 1 year ago - Pushed at: about 8 years ago - Stars: 13 - Forks: 5

taznux/radiomics-tools

Image processing tools for radiomics analysis

Language: C++ - Size: 10.8 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 20 - Forks: 13

seungkyoon/SimpleITK Fork of SimpleITK/SimpleITK

SimpleITK: a simplified layer build on top of the Insight Toolkit (ITK), intended to facilitate its use in rapid prototyping, education and interpreted languages.

Language: C++ - Size: 18.7 MB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0

junqiangchen/LiTS---Liver-Tumor-Segmentation-Challenge

LiTS - Liver Tumor Segmentation Challenge

Language: Python - Size: 8.56 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 212 - Forks: 70

junqiangchen/HVSMR2016Challenge

HVSMR 2016: MICCAI Workshop on Whole-Heart and Great Vessel Segmentation from 3D Cardiovascular MRI in Congenital Heart Disease

Language: Python - Size: 4.81 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 11 - Forks: 4

gpeddev/NSCLC

Unsupervised Feature Extraction for Assessing Recurrence of Lung Cancer

Language: Python - Size: 172 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Eyap53/simpleitk

Size: 14.6 KB - Last synced at: 3 days ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

nslay/PyComputeBValue

Calculate b-value images from two or more other b-value images using a monoexponential model (for prostate mpMRI).

Language: Python - Size: 84 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

Zahed-Golabi/Medical-Imaging

Medical Image Processing

Language: Jupyter Notebook - Size: 12.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ayush9304/Lung_Cancer_Detection

Lung Nodules Segmentation from CT scans using CNN.

Language: Jupyter Notebook - Size: 100 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

rmsandu/segmentation-eval

Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.

Language: Python - Size: 1.44 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 13 - Forks: 5

junqiangchen/MedicalImageProcessExample

There are some examples of 3D Medical Image Process

Language: Python - Size: 123 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 36 - Forks: 7

niklr/animated-medical-imaging

Streamlines the process of generating an optimal subset representing a multi-dimensional medical image and combining the subset to an animated sequence.

Language: C# - Size: 13.8 MB - Last synced at: 27 days ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 2

ssharkov03/Vascular-Deformation-Mapping

Synthetic 3d image generation for Vascular Deformation Project.

Language: Python - Size: 98.9 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

ahestevenz/simple-register

C++ class for 2D multimodal image registration based on SimpleElastix | simpleregister commandline application

Language: C++ - Size: 377 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 1 - Forks: 1

PWB97/BSpline

Use Bspline in simpleITK to transform images and show the deformation flow

Language: Python - Size: 326 KB - Last synced at: 2 months ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 0

NikolaAndro/Automated_Homography_Matrix

Goal is to have 2D, 3D, and 4D transformations.

Language: C++ - Size: 3.93 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

aliamrod/3-Dimensional-Medical-Imaging-Preprocessing

The following repository contains pre-processing modules for 3D Medical Imaging.

Size: 12.7 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

dave3d/SimpleITKWidgets

A package that allows the display of a SimpleITK volumetric image in ITK Widgets.

Language: Jupyter Notebook - Size: 8.79 KB - Last synced at: about 1 month ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0

TannerSorensen/sitk_tools

SimpleITK tools for use at the command line

Language: Python - Size: 16.6 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 6 - Forks: 1

FlorianMF/snippets

Miscellaneous collection of code snippets for diverse purposes

Language: Python - Size: 34.2 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

abpwrs/ece-5490-sp19

Medical Image Analysis Tools and Techniques

Language: Jupyter Notebook - Size: 124 MB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0