carpentries-incubator/SDC-BIDS-dMRI

Introduction to dMRI

Language: Jupyter Notebook - Size: 45.3 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 26 - Forks: 19

dipy/dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

Language: Python - Size: 72.5 MB - Last synced at: 4 days ago - Pushed at: 24 days ago - Stars: 757 - Forks: 445

PennLINC/qsirecon

Reconstruction of preprocessed q-space images (dMRI)

Language: Python - Size: 179 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 9 - Forks: 10

JuliaHealth/KomaMRI.jl

Koma is a Pulseq-compatible framework to efficiently simulate Magnetic Resonance Imaging (MRI) acquisitions. The main focus of this package is to simulate general scenarios that could arise in pulse sequence development.

Language: Julia - Size: 542 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 137 - Forks: 22

ManuelaCarriero/NeuPipelines

This repository stores image processing pipelines for magnetic resonance neuroimages developed during my PhD in Neuroscience and Imaging.

Language: MATLAB - Size: 1.3 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0

scilus/dmri-explorer

A real-time diffusion MRI viewer for Linux and Windows using OpenGL 4.6.

Language: C++ - Size: 13 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 9 - Forks: 7

rf2485/ismrm_2025

Image processing pipeline and statistical analysis for Flaherty et al. 2025. First Application of the Standard Model of Diffusion to Subjective Cognitive Decline Reveals Novel Insights into White Matter Microstructure. Presented at ISMRM Workshop on 40 Years of Diffusion: Past, Present & Future Perspectives, Kyoto, Japan

Language: Shell - Size: 64.9 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 0 - Forks: 0

UAmsbil/PLI-MRI_OpticChiasm

This repository includes information contributing to a multimodal backscattering Mueller matrix polarized light imaging (PLI) and diffusion MRI (dMRI) analysis within the ferret optic chiasm (OC) nerve structure.

Language: Python - Size: 6.18 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 2 - Forks: 0

MICA-MNI/micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

Language: Shell - Size: 356 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 101 - Forks: 34

chbh-opensource/mri-on-bear-edu

Repository for the MRI on BEAR educational resource

Language: HTML - Size: 46.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

PennLINC/qsiprep

Preprocessing of diffusion MRI

Language: Python - Size: 178 MB - Last synced at: 21 days ago - Pushed at: about 1 month ago - Stars: 153 - Forks: 58

nipreps/eddymotion 📦

Open-source eddy-current and head-motion correction for dMRI.

Language: Python - Size: 15.1 MB - Last synced at: 16 days ago - Pushed at: 4 months ago - Stars: 17 - Forks: 16

bids-apps/MRtrix3_connectome

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

Language: Python - Size: 781 KB - Last synced at: 17 days ago - Pushed at: over 1 year ago - Stars: 51 - Forks: 26

ChengjinLii/DDCSR

DDCSR: A Novel End-to-End Deep Learning Framework for Cortical Surface Reconstruction from Diffusion MRI

Language: Python - Size: 36.1 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 6 - Forks: 0

oliverchampion/IVIMNET

This repository contains the code regarding our publication: Improved unsupervised physics-informed deep learning for intravoxel-incoherent motion modeling and evaluation in pancreatic cancer patients

Language: Python - Size: 22 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 21 - Forks: 12

nipreps/dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Language: Python - Size: 115 MB - Last synced at: 10 days ago - Pushed at: over 1 year ago - Stars: 67 - Forks: 25

HarmonizedMRI/HarmonizedMRI.github.io

Official website for HarmonizedMRI—a platform dedicated to sharing MRI harmonization projects and resources.

Language: CSS - Size: 6.67 MB - Last synced at: 2 days ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 4

ImperialCollegeLondon/INDI

INDI is a command line tool to process in-vivo cardiac diffusion tensor imaging.

Language: Python - Size: 18.5 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 4 - Forks: 0

NYU-DiffusionMRI/SMI

Toolbox for parameter estimation of the Standard Model of diffusion in white matter

Language: MATLAB - Size: 776 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 22 - Forks: 0

SlicerDMRI/whitematteranalysis

White matter tractography clustering and more...

Language: Python - Size: 203 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 72 - Forks: 34

kerkelae/disimpy

Massively parallel Monte Carlo diffusion MR simulator written in Python.

Language: Python - Size: 11.2 MB - Last synced at: 2 days ago - Pushed at: 6 months ago - Stars: 25 - Forks: 9

dipy/docs.dipy.org

DIPY documentation generated html

Language: HTML - Size: 171 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

AthenaEPI/dmipy

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

Language: Python - Size: 64.8 MB - Last synced at: 7 days ago - Pushed at: 5 months ago - Stars: 105 - Forks: 33

lamyj/erwin

Quantitative MRI toolbox in Python

Language: Python - Size: 4.73 MB - Last synced at: 16 days ago - Pushed at: 5 months ago - Stars: 12 - Forks: 0

icon-lab/FD-Net

Official repository for "FD-Net: An Unsupervised Deep Forward-Distortion Model for Susceptibility Artifact Correction in EPI"

Language: Python - Size: 90.6 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 1

SlicerDMRI/wmap

White Matter Analysis Pipeline (WMAP)

Language: Python - Size: 137 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

acsenrafilho/templateCreator

Shell scripts pipelines to create DTI templates

Language: Shell - Size: 87.3 MB - Last synced at: 8 days ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

muscbridge/PyDesigner

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

Language: Python - Size: 47.8 MB - Last synced at: 4 days ago - Pushed at: 16 days ago - Stars: 28 - Forks: 7

SlicerDMRI/slicerdmri.github.io

SlicerDMRI organization website repository

Language: TeX - Size: 427 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 3

SlicerDMRI/SlicerDMRI

Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

Language: C++ - Size: 8.37 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 78 - Forks: 27

cwatson/mri_library

Scripts for MRI preprocessing

Language: Shell - Size: 146 KB - Last synced at: 14 days ago - Pushed at: over 4 years ago - Stars: 10 - Forks: 2

jonhrafe/MCDC_Simulator_public

The Monte Carlo Diffusion and Collision simulator (MC/DC), is a C++ open-source Diffusion-Weighted Magnetic Resonance Imaging (DW-MRI) Monte Carlo Simulator.

Language: C++ - Size: 38.3 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 22 - Forks: 14

delucaal/MRIToolkit

Language: MATLAB - Size: 8.46 MB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 25 - Forks: 4

miac-research/psmd

Peak width of Skeletonized Mean Diffusivity (PSMD)

Language: Shell - Size: 2.84 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 11 - Forks: 1

samuelstjean/dpr

Diffusion profile realignment - Making your along-tract analysis reliable

Language: Jupyter Notebook - Size: 11.4 MB - Last synced at: 20 days ago - Pushed at: 5 months ago - Stars: 3 - Forks: 0

samuelstjean/autodmri

Automated characterization of noise distributions in diffusion MRI data

Language: Python - Size: 28 MB - Last synced at: 26 days ago - Pushed at: 5 months ago - Stars: 7 - Forks: 2

GeodAIsics/TractLearn-WholeBrain

TractLearn is a Manifold Learning Toolbox for precision medicine. The first application is for Diffusion-Weighted MRI quantitative analysis.

Language: Python - Size: 117 KB - Last synced at: 14 days ago - Pushed at: about 4 years ago - Stars: 9 - Forks: 1

exlava/ALC-DTI

Alcohol study DTI Analyses

Language: Shell - Size: 3.08 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

dicemt/DTI-NODDI

:brain: DTI-NODDI: Create NODDI maps from DTI (either "FA and MD" or "L1, L2, and L3")

Language: Python - Size: 23.4 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 6 - Forks: 6

CSIM-Toolkits/SlicerDiffusionComplexityMap

Slice module to offer the Diffusion Complexity Map algorithm

Language: C++ - Size: 350 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 1

bids-apps/tracula

implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.

Language: Python - Size: 105 KB - Last synced at: 17 days ago - Pushed at: 6 months ago - Stars: 3 - Forks: 4

bids-apps/ndmg

BIDS app for NeuroData's MRI to Graphs pipeline

Language: Dockerfile - Size: 71.3 KB - Last synced at: 17 days ago - Pushed at: 6 months ago - Stars: 5 - Forks: 8

DiffusionMRITool/spherical_uniform_sampling

This code is used to optimize single or multiple shell uniform sampling schemes in diffusion MRI via continuous optimization and discrete optimization.

Language: Python - Size: 144 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 0

samuelstjean/nlsam

The reference implementation for the Non Local Spatial and Angular Matching (NLSAM) denoising algorithm for diffusion MRI

Language: Python - Size: 63.1 MB - Last synced at: 1 day ago - Pushed at: about 2 months ago - Stars: 24 - Forks: 11

marksgraham/DW-POSSUM

Simulate realistic diffusion-weighted MR data

Language: Python - Size: 91.8 KB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 19 - Forks: 9

imeka/trk-io

TrackVis (*.trk) reader and writer

Language: Rust - Size: 268 KB - Last synced at: 15 days ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 1

jsjol/NOW

NOW - Numerical Optimization of gradient Waveforms

Language: MATLAB - Size: 1.06 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 16 - Forks: 6

teanijarv/mribrew

python pipeline for dwi processing and analysis

Language: Python - Size: 38.7 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

MIC-DKFZ/MITK-Diffusion

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

Language: C++ - Size: 15.9 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 76 - Forks: 15

TylerSpears/fenri

FENRI (Fiber Orientations from Explicit Neural Representations) Implementation Repository, presented at the ISBI 2024 conference

Language: Jupyter Notebook - Size: 43 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 0

MASILab/Synb0-DISCO

Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps

Language: Python - Size: 397 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 57 - Forks: 28

c-tous/MSK-diffusion-MRI

Musculoskeletal MRI: diffusion tensor imaging, tractography, orientation distribution function, elevation and pennation angle, torsional shear models, with data set available

Size: 116 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

CHrlS98/RTfODFSlicer 📦

A real-time fiber ODF slicing application for Linux using OpenGL 4.6.

Size: 2.86 MB - Last synced at: 11 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

SlicerDMRI/SlicerWMA

Extension for 3D slicer that provides a module and a python package for fiber clustering and tractography analysis.

Language: Python - Size: 104 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 3

brain-life/encode

Method for encoding brain connectomes in multidimensional arrays (tensors).

Language: MATLAB - Size: 2.61 MB - Last synced at: 15 days ago - Pushed at: about 4 years ago - Stars: 38 - Forks: 25

UNFmontreal/toad

No Longer Maintained

Language: Python - Size: 19.7 MB - Last synced at: 12 months ago - Pushed at: almost 5 years ago - Stars: 7 - Forks: 11

DelinteNicolas/UTracto

Package facilitating the tracking of sub-cortical U-Fibers

Language: Python - Size: 36.4 MB - Last synced at: 9 months ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 0

StanfordMIMI/DDM2

[ICLR2023] Official repository of DDM2: Self-Supervised Diffusion MRI Denoising with Generative Diffusion Models

Language: Python - Size: 21.3 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 118 - Forks: 19

villalonreina/dMRI_Harmonization

Language: Python - Size: 7.81 KB - Last synced at: 5 months ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1

dipy/bl_apps_dipy_buan_shapes

BUAN shape analysis App in BrainLife

Language: Dockerfile - Size: 9.77 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1

AlexVCaron/mrHARDI

Multi-usage python library for processing and modeling of diffusion MRI images. For pipelining tools, see mrHARDIflow at https://github.com/AlexVCaron/mrHARDIflow.

Language: Python - Size: 943 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

ruizengalways/FOD-Net

FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution

Language: Python - Size: 7.18 MB - Last synced at: 9 months ago - Pushed at: about 3 years ago - Stars: 17 - Forks: 5

MASILab/cornn_tractography

Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context

Language: Python - Size: 116 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 1

AIM-KannLab/pediatric-brain-age

Code for paper "Diffusion Deep Learning for Brain Age Prediction and Longitudinal Tracking in Children through Adulthood

Language: Python - Size: 50.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 0

brainlife/app-segment-tracts-between-multiple-regions

Tract Segmentation from input tractography using ROIs

Language: Shell - Size: 55.3 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 1

brainlife/app-fslDTIFIT

This app will fit the diffusion tensor model (DTI) to a diffusion MRI image using FSL's dtifit commmand.

Language: Shell - Size: 27.3 KB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

SlicerDMRI/ORG-Atlases

ORG Fiber Clustering White Matter Atlas

Size: 1.46 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 23 - Forks: 6

cabeen/qit

A repository for the Quantitative Imaging Toolkit (QIT)

Language: Java - Size: 975 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 16 - Forks: 1

scil-vital/tractolearn

Tractography learning

Language: Python - Size: 576 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 4

alexpron/mrproc

Magnetic Resonance Imaging data processing pipelines with a strong emphasis on the diffusion weighted MRI (DWI) modality and tractogram estimation

Language: Python - Size: 1.29 MB - Last synced at: 6 months ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 2

NIRALUser/DTIProcessToolkit

DTIProcess is a DTI processing and analysis toolkit developed in UNC and University of Utah

Language: C++ - Size: 175 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 8

brainlife/app-mrtrix3-preproc

Run the recommended preprocessing procedure provided by mrtrix3. The options available mostly reflect the optimal DESIGNER pipeline that was recently proposed. This App runs for >15 on topup if both PA and AP dwi files are provided. It detects bvecs flipping (dwigradcheck) and update the gradient table accordingly.

Language: Shell - Size: 3.7 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 6

NIRALUser/DTI-Reg

DTI-Reg is an open-source C++ application that performs pair-wise DTI registration, using scalar FA map to drive the registration

Language: CMake - Size: 244 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 2

dipy/bl_apps_dipy_median_otsu

Brainlife wrapper app for dipy_median_otsu workflows.

Language: Shell - Size: 6.84 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1

dipy/bl_apps_dipy_fit_dti

Brainlife wrapper app for dipy_fit_dti workflows.

Language: Shell - Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

Dhaif/NAIScontrolsQuantification

Interactive data visualisation of differents brain tracts parameters

Language: JavaScript - Size: 21.3 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

phildean/SPM_DiffusionII_Toolbox_BatchScript

Script for running sucbjects through DiffusionII Toolbox in SPM

Language: MATLAB - Size: 29.3 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 1

3Tissue/MRtrix3Tissue Fork of MRtrix3/mrtrix3

MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.

Language: C++ - Size: 24.3 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 5

khieunguyen/GPUMCdMRI

Efficient GPU-based Monte-Carlo simulation of diffusion MRI

Size: 28.3 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 0

DiffusionMRITool/dmritool

DMRITool is an open souce toolbox for reconstruction, processing and visualization of diffusion MRI data (DWI, tensor, ODF,EAP, fibers etc.).

Language: C++ - Size: 3 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 20 - Forks: 6

ejcanalesr/sparse-wars

Deconvolution algorithms for diffusion MRI

Language: MATLAB - Size: 4.53 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 7 - Forks: 0

NIRALUser/DTIPrep

DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation

Language: C++ - Size: 2.04 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 16 - Forks: 11

RicardoZiTseng/SACNet

Language: Python - Size: 146 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

MASILab/STrUDeL

Streamline Tractography Utilities for Deep Learning

Language: Python - Size: 38.3 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

HaoXu0507/ISBI2023-One-Shot-WM-Tract-Segmentation

ISBI 2023 - A Registration- and Uncertainty-based Framework for White Matter Tract Segmentation with Only One Annotated Subject

Language: Python - Size: 4.37 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

katochnitish/MRCI-Preproc

Language: Shell - Size: 30.3 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

SlicerDMRI/tutorials

SlicerDMRI tutorial repository

Language: HTML - Size: 495 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 1

teanijarv/MAPMRI-pype

Python pipeline for analyzing diffusion MRI data using MAPMRI.

Language: Python - Size: 10.7 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

nslay/PyComputeBValue

Calculate b-value images from two or more other b-value images using a monoexponential model (for prostate mpMRI).

Language: Python - Size: 84 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

nslay/ComputeBValue

Calculate b-value images from two or more other b-value images using monoexponential, IVIM, or kurtosis models (for prostate mpMRI).

Language: C++ - Size: 189 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

rmukh/spherical_ridgelets

Package to compute spherical ridgelets

Language: C++ - Size: 504 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

rmukh/ukftractography_dp

Diffusion propagator mode for Unscented Kalman Filter brain tractography

Language: C - Size: 204 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

rmukh/basicregistrationMRIpipeline

The basic structural and diffusion MRI registration with pre-processing pipeline in Python.

Language: Python - Size: 70.3 KB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

francopestilli/life

Please use the new version of LiFE: www.github.com/brain-life/encode

Language: Matlab - Size: 5.42 MB - Last synced at: 9 months ago - Pushed at: over 7 years ago - Stars: 35 - Forks: 15

brainhack-school2020/mwmaclean-BHS2020

Organizing, preprocessing, analyzing and visualizing diffusion MRI data.

Language: Jupyter Notebook - Size: 18.6 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0

kerkelae/ufa-model-comparison

Code for reproducing the results of my μFA model comparison paper.

Language: Jupyter Notebook - Size: 5.26 MB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

kerkelae/dkmri

Reproducible and efficient diffusion kurtosis imaging in Python.

Language: Python - Size: 570 KB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 2

chamberm/Detect

Anomaly detection framework for Tractometry

Language: Python - Size: 10.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 13 - Forks: 1

ShreyasFadnavis/patch2self

Patch2Self Denoising - NeurIPS 2020 Spotlight Presentation

Language: Jupyter Notebook - Size: 22.2 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 19 - Forks: 5

aramis-lab/clinica_pipeline_noddi 📦

NODDI pipeline used for [Wen et al., 2018]

Language: Python - Size: 31.3 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0