Pei-mao/C2FViT_Medical_Image

This repository refers to C2FViT

Language: Python - Size: 140 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 2 - Forks: 0

MasoudKargar/HNMD-CNN

A Hierarchical Narrowing Multi-Deep Convolutional Neural Network for Precision Glioma Classification in 3D MRI Images

Language: Python - Size: 13.7 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

davidj-brewster/autoneurosegment

DiCOM to NiFTI processing pipeline orchestration, combining multiple planes via ANTs to maximise resolution and suitability for clustering and post-processing

Language: Shell - Size: 272 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 1 - Forks: 0

ChristianGaser/cat12

Computational Anatomy Toolbox for SPM12 or SPM25

Language: MATLAB - Size: 658 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 35 - Forks: 6

wwu-mmll/deepmriprep

Neural network-based MRI preprocessing: Prep 🧠 images in seconds 🔥

Language: Python - Size: 199 MB - Last synced at: 10 days ago - Pushed at: 3 months ago - Stars: 31 - Forks: 0

nafiuny/Optimized_TumorClassifierResNetSD

A Novel Optimized ResNet-SD Model for Brain Tumor Classification Using Stochastic Depth and Metaheuristic Optimization

Language: Python - Size: 232 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0

dipterix/three-brain-js

Javascript engine for 3D brain model (used by RAVE project)

Language: JavaScript - Size: 32.3 MB - Last synced at: 21 days ago - Pushed at: about 2 months ago - Stars: 16 - Forks: 4

davidj-brewster/agentic-e2e-dicom-medical-pipeline

Multi-Agentic adaptive FreeSurfer/FSL Registration, ROI-detection, Segmentation, Clustering, Visualisation and Anomaly detection System for DiCOM and NiFTi images and sequences

Language: Python - Size: 273 KB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 1 - Forks: 0

MICA-MNI/micaflow

The easy way to process MRI data

Language: Python - Size: 320 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 0

LudovicGardy/ladybird_MRI

An application to visualize 3D medical images, including MRI and PET scans, with dynamic enhancement features to improve visual analysis​.

Language: Python - Size: 33.8 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 0

templateflow/templateflow

The TemplateFlow Archive - A DataLad super-dataset

Size: 46.4 MB - Last synced at: 3 days ago - Pushed at: about 1 year ago - Stars: 76 - Forks: 14

MaastrichtU-CDS/federated-brain-age

Federated implementation of a CNN to predict brain age from MRI-derived gray matter

Language: Python - Size: 35.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 4

Open-Minds-Lab/mrQA

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

Language: Python - Size: 16 MB - Last synced at: about 1 month ago - Pushed at: 12 months ago - Stars: 12 - Forks: 6

truong2710-cyber/Brain-MRI-Segmentation

Using U-Net based models to perform brain MRI Segmentation

Language: Python - Size: 834 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

mkang315/PK-YOLO

[WACV'25] Official implementation of "PK-YOLO: Pretrained Knowledge Guided YOLO for Brain Tumor Detection in Multiplane MRI Slices".

Language: Python - Size: 776 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 6 - Forks: 1

MariuszPaluch2001/Brain-Cancer-Segmentation

Brain Tumor Segmentation with UNet-2D

Language: Python - Size: 4.37 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

ChristianGaser/tfce

Threshold-free cluster enhancement toolbox for Matlab

Language: MATLAB - Size: 3.19 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 9 - Forks: 0

BhaveshBhakta/Brain-Tumor-MRI-Classification-Using-ResNet101

Brain Tumor MRI Classification

Language: Jupyter Notebook - Size: 1.37 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

dipterix/threeBrain

3D Visualization of Brain MRI

Language: R - Size: 176 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 43 - Forks: 11

FinnBehrendt/Conditioned-Diffusion-Models-UAD

Codebase for Conditioned Diffusion Models for Unsupervised Anomaly Detection

Language: Python - Size: 38.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 14 - Forks: 5

VictoorV/mri_segmentation

U-Net for MRI segmentation.

Language: Jupyter Notebook - Size: 30.7 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

Angeluz-07/MRI-preprocessing-techniques

Code examples of the free course in Youtube of brain MRI preprocessing techniques in python

Language: Jupyter Notebook - Size: 40.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 58 - Forks: 19

Pegah-Ardehkhani/Brain-MRI-Segmentation

U-Net from Scratch for Brain Tumor Segmentation

Language: Jupyter Notebook - Size: 8 MB - Last synced at: about 2 months ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0

msikorski93/Alzheimer-s-Disease-Classification

A multi classification using scikit-learn and TensorFlow models on MRI scans of patient's brains.

Language: Jupyter Notebook - Size: 3.93 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

exlava/ALC-DTI

Alcohol study DTI Analyses

Language: Shell - Size: 3.08 MB - Last synced at: 16 days ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

jc-cp/mri_preprocessing

This repository aims to present a general, customazible pipeline for MRI images based on a single configuration file (in .json format) that has different flags and according to them, a certain pre-processing procedure with desired steps is performed.

Language: Python - Size: 49.7 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 4 - Forks: 0

HalemoGPA/BrainMRI-Tumor-Classifier-Pytorch

A deep learning project using PyTorch to classify brain tumors from MRI images into categories like No Tumor, Pituitary, Glioma, and Meningioma.

Language: Jupyter Notebook - Size: 17.4 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

esterified/MRI-image-CNN

MRI Image classification using LeNet.

Language: Python - Size: 32.2 KB - Last synced at: about 2 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 0

overjoyroy/MSNger

A tool to build custom Morphometric Similarity Networks

Language: Python - Size: 836 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

FahimFBA/skull-stripping-3D-brain-mri

Apply Skulll Stripping to any 3D Brain MRI images

Language: Jupyter Notebook - Size: 836 MB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 1

ahmedgh970/brain-anomaly-seg

Transformer-based Models for Unsupervised Anomaly Segmentation in Brain MR Images

Language: Python - Size: 120 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 20 - Forks: 3

BRAIN-TO/GIRFReco.jl

An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia

Language: Julia - Size: 115 MB - Last synced at: 6 days ago - Pushed at: 8 months ago - Stars: 16 - Forks: 1

liemkg1234/Pix2Pix_MRIBrain

Semantic Segmentaion for MRI Brain Using Pix2Pix model

Language: Jupyter Notebook - Size: 12.4 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

PatimaDA/MRI

"MRI Fundamental" by KAIST University on Coursera.

Size: 5.86 KB - Last synced at: 8 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

abwahab175/mri-report-generator

MRI Report Generation and Tumor Segmentation with Streamlit A Streamlit application that processes MRI images to segment tumors using YOLOv8 and generates comprehensive PDF reports with AI-powered analysis from Google Gemini. Ideal for radiologists and healthcare professionals needing quick and accurate report generation from MRI data.

Size: 3.91 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

longw010/Low_Field_Enhancement

The official implementation of `Quantitative Ischemic Lesions of Portable Low-Field-Strength MRI Using Deep Learning-Based Super-Resolution`

Language: Jupyter Notebook - Size: 17.4 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0

tawilkinson/FLIRT-reg

A python wrapper for FLIRT MRI registration

Language: Python - Size: 25.4 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 0

Pei-mao/TransMorph

Language: Python - Size: 15.2 MB - Last synced at: about 2 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0

leeh-nix/MRI-CT-Scan-Classifier

MRI, CT Scan brain image classifier

Language: Python - Size: 50 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

AlexanderFrotscher/ANDi

Codebase for Unsupervised Anomaly Detection using Aggregated Normative Diffusion (ANDi)

Language: Python - Size: 157 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 6 - Forks: 0

FeliMe/brain_sas_baseline

Official implementation of the paper "Challenging Current Semi-Supervised Anomaly Segmentation Methods for Brain MRI" accepted to the MICCAI 2021 BrainLes workshop

Language: Python - Size: 36.1 KB - Last synced at: 9 months ago - Pushed at: over 3 years ago - Stars: 10 - Forks: 1

LucaSpadoni/MRI-Brain-Parts-Detection

Mathematica here is used for the detection of various brain parts on MRI brain images. The concept of image processing and segmentation was used to outline the brain areas in the given set of images.

Language: Mathematica - Size: 12.8 MB - Last synced at: about 2 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

Mappo23/DL-DiReCT-v8

DL+DiReCT-v8 - Deep Learning-based Lesion-aware Brain Anatomy Segmentation and Parcellation Model

Language: Python - Size: 175 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

iranamuneeb/Semantic-Segmentation-of-MRI

We used our own Generator to generate and Use images in our custom 3D-Unet model while converting our images into numpy arrays for faster & better results.

Language: Python - Size: 14.6 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

brainhack-school2020/hannahkiesow_RiskyBrain

Predicting risky behavior in structural brain volume using the UK Biobank

Language: Python - Size: 935 KB - Last synced at: 11 months ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

high-dimensional/biobank-megamodeller

This is a repository hosting all code and models detailed in the article Computational limits to the legibility of the human brain.

Language: HTML - Size: 38.8 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

Adl1coder/ImageProcessingExercises

image processing exercises with google colab

Language: Jupyter Notebook - Size: 1.18 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

KUL-Radneuron/KUL_VBG

A workflow to allow Freesurfer recon-all to run on brain image with gliomas

Language: Shell - Size: 562 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 27 - Forks: 3

mollyic/MRI_qa

Python tool for rating nifti (.nii/.nii.gz) scans.

Language: Python - Size: 145 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

wmotte/tbi

Software for a preclinical traumatic brain injury study

Language: R - Size: 9.57 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

tayebiarasteh/federated_he

Federated learning with homomorphic encryption enables multiple parties to securely co-train artificial intelligence models in pathology and radiology, reaching state-of-the-art performance with privacy guarantees.

Language: Python - Size: 585 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 0

el-moudni-hicham/brain-mri-segmentation-kmeans-pyspark

Brain MRI Segmentation using K-means Algorithm in PySpark

Language: Jupyter Notebook - Size: 499 KB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

kaledhoshme123/VAE-CycleGAN-MRI-CT-Scan-Images

The study works on generating CT images from MRI images, where unsupervised learning was used using VAE-CycleGan. Since the number of samples included in the data set used in the study, and therefore in this case we are in a state of epistemic uncertainty, therefore probabilistic models were used in forming the latent space.

Language: Jupyter Notebook - Size: 11.6 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Medical-Image-Analysis-Laboratory/FaBiAN

FaBiAN is the first Fetal Brain magnetic resonance Acquisition Numerical phantom that simulates realistic T2-weighted magnetic resonance images of the developing fetal brain throughout gestation. It is open source and supports reproducibility studies to improve fetal brain diagnosis.

Language: MATLAB - Size: 112 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 5

SAIL-GuoLab/DeepContrast_Demo

This is the repository that accompanies the manuscript "Deep Learning of MRI Contrast Enhancement for Mapping Cerebral Blood Volume from Single-Modal Non-Contrast Scans of Aging and Alzheimer's Disease Brains" accepted for publication in Frontiers in Aging Neuroscience, section Neurocognitive Aging and Behavior (July-18-2022).

Language: Python - Size: 1.42 MB - Last synced at: 3 days ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 2

StatPal/DeepSynMRI

A python package for deep learning ehancements to synthetic Magnetic Resonance Imaging (MRI)

Language: Python - Size: 55.5 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1

high-dimensional/tumour-seg

This is a repository hosting all models detailed in the article Brain tumour segmentation with incomplete imaging data.

Language: Python - Size: 4.36 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 2

elayden/NIfTI-Studio

A toolbox for NIfTI and Analyze medical image visualization, editing, and 3D rendering

Language: MATLAB - Size: 10.4 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 1

ejcanalesr/multicomponent-T2-toolbox

Non-parametric T2 relaxometry methods for myelin water quantification

Language: Python - Size: 756 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 4

eebrown/LST

Lesion Segmentation Tool by Paul Schmidt (https://www.applied-statistics.de/lst.html)

Language: MATLAB - Size: 21.9 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1

hirshagarwal/MRISeg

Re-trainable MRI image segmentation model.

Language: Python - Size: 1.04 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

volBrain/DeeplesionBrain

Size: 1.95 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 6 - Forks: 0

technoshaman001/EEG

Electroencephelography Data taken from my Muse Headband

Language: Jupyter Notebook - Size: 13.7 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

CPernet/meta_meditation

raw metadata files, scripts and derived files for 'Mindfulness related changes in grey matter: A Systematic Review and Meta-analysis'

Language: R - Size: 9.21 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

MohamadAboud/Brain-pathology

The repository is focused on leveraging deep learning techniques to detect various brain pathologies from Magnetic Resonance Imaging (MRI) scans. The project involves using a convolutional neural network (CNN) to accurately identify and diagnose brain pathologies such as tumors, strokes, and hemorrhages.

Language: C# - Size: 115 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

kesshijordan/Kesh_Autoseg_Tools

This is a set of tools associated with automatically segmenting tractography datasets using a combination of two complementary approaches: streamlines included in a fascicle model are identified based on 1) anatomical connectivity priors based on Freesurfer-derived regions of interest (ROIs) in the subject’s native space and 2) shape priors based on 3D streamline bundle atlases applied using Recobundles. The code for a methodology generating bundle atlases is also included, as well as useful command-line helper scripts such as identification of outliers, filtering, and merging functions.

Language: Jupyter Notebook - Size: 1.63 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

damianpolakpjwstk/alzheimer_disease_classification_tools

Tools for MRI classification of Alzheimer's disease using 3D CNN networks

Language: Jupyter Notebook - Size: 32.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

mvhssriraj/Brain-Tumor-Detection

Brain tumor Detection and Classification using Magnetic Resonance Images

Language: Jupyter Notebook - Size: 17.8 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

KevinTsaiCodes/aocnr2023-a2cbf

Using step-by-step tutorial in implementing the technique discussed in the paper titled "Actor-Critic Bilateral Filter for High-Stability Edge-Preserving T2-FLAIR MRI Image Denoising" was presented at the 14th Asian-Oceanian Congress of Neuroradiology held in Singapore in conjunction with SGCR-WIRES.

Language: Python - Size: 61.5 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 0

NeuroSainteAnne/synthFLAIR

Synthetic FLAIR generation software

Language: Python - Size: 2.11 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 2

EmanuelAlogna/Brain-MRI-generation-using-GANs

Generation missing MRI using GANs - master thesis from Politechnic of Milan

Language: Jupyter Notebook - Size: 998 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 5 - Forks: 4

MRI-NOBEL/Perfusion-NOBEL

Pre-clinical DSC-MRI perfusion map generator written in Python

Language: Python - Size: 4.87 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

SABS-R3-projects/Paint4Brains

A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.

Language: Python - Size: 230 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 0

gsroberts1/QVT

Quantitative Velocity Tool (QVT) for Cranial 4D Flow Hemodynamic Analysis

Language: MATLAB - Size: 21.3 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 3

MoraRubio/alzheimer-stages-dl

Classification of Alzheimer's Disease stages from Magnetic Resonance Images using Deep Learning

Language: Python - Size: 574 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

MadheshRajS/MRI-reconstruction-using-Densely-Connected-Residual-DCR-block

Convolutional Neural Network(CNN) with Densely Connected Residual(DCR) block is built. U-Net with Densely Connected Residual(DCR) block is built. High quality reconstructed images with less noise and superior visual quality is produced

Language: Jupyter Notebook - Size: 188 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 1

rmsouza01/MC-MRI-Rec

Language: Jupyter Notebook - Size: 99.5 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 41 - Forks: 7

arnejad/FLBS

A Fast and Memory-efficient (Light) Brain MRI Segmentation Framework for Clinical Applications

Language: MATLAB - Size: 6.84 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

elayden/MRIqual

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

Language: MATLAB - Size: 2.57 MB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 6

TUDelftHao/4DLongitudinal-MRI-Segmentation-Network

This is my Master thesis work at TU Delft, to longitudinally segment the MRI brain image series by 4D network.

Language: Python - Size: 1.08 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 1

Sourav-B98/ALZHEIMERS-PREDICTION-CNN

This Machine Learning course project is on 3D MRI image analysis for Alzheimer's disease prediction. Transfer Learning is used for classification and analysis of images.

Language: Jupyter Notebook - Size: 2.09 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 6 - Forks: 0

neural-tangjie/BTJ-brain_make_sphere_roi

🧠 This repository is a shell script to make a sphere roi based on MRI data.

Language: Shell - Size: 1000 Bytes - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

gogolB/Brain_Lesion_Segmetation

Project for UCSF 265

Language: Jupyter Notebook - Size: 1.05 MB - Last synced at: 28 days ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 0

dumitrux/navigate-MRI-with-3Dmouse

It displays MRI in 2D and 3D multi-slice views, with easy search and navigation with a 3D mouse.

Language: JavaScript - Size: 16.9 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

ubmagh/KMeans_mri_MapReduce

Implementation of Kmeans algorithme on brain MRI, in a parallel manner with MapReduce

Language: Java - Size: 2.49 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 5 - Forks: 0

donghui1119/Public_Neuroimaging_Datasets

Size: 31.3 KB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

Sudhanshu1304/Brain-MRI-Synthesis

A Research Project Using Generative models like Variational Autoencoder (VAE), T2-Weighted Images are being generated from T1-Weighted Images. Have achieved a maximum of 0.15 RMSE on validation dataset.

Language: Jupyter Notebook - Size: 22.8 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

FNNDSC/pycivet

Python bindings for CIVET

Language: Python - Size: 330 KB - Last synced at: 24 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

mattmolinare/chiron

Brain tumor classification in MRI data using EffecientNetV2 pretrained on ImageNet 1k

Language: Jupyter Notebook - Size: 1.8 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

benalibayram/PyProjBrowser

MRI data browser GUI with SQLite

Language: Python - Size: 150 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

award7/asl_analysis_pipeline

Various scripts (Bash, Matlab, Python) for processing ASL MRI data using AFNI, SPM, and FSL.

Language: Python - Size: 1.76 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

helenelajous/FaBiAN Fork of Medical-Image-Analysis-Laboratory/FaBiAN

FaBiAN is an open-source Fetal Brain magnetic resonance Acquisition Numerical phantom that simulates realistic T2-weighted magnetic resonance images (MRI) of the developing fetal brain throughout gestation. FaBiAN simulates as closely as possible the physical principles involved in fast spin echo (FSE) sequences at various clinical magnetic field strengths (1.5T and 3T). It reproduces the implementation specificities from several MR vendors (currently, Siemens Healthcare and GE Healthcare). FaBiAN is built on segmented high-resolution anatomical images of the fetal brain across maturation and relies on the extended phase graph (EPG) formalism of the MR signal formation. It is based on a general and realistic setup that includes intensity non-uniformity fields and stochastic movements of the fetus. It is highly flexible in the choice of the sequence parameters and anatomical settings available to the user. With this first MR acquisition simulation framework of the developing fetal brain, we aim at providing the community with a unified environment for the evaluation and validation of various post-processing techniques dedicated to improving the analysis of fetal brain MR images and supporting accurate diagnosis.

Language: MATLAB - Size: 112 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

pradeepsen99/MultiNifti_to_png

Takes in multiple Nifti files with masks and converts them into training and validation datasets for use in AI/ML training

Language: Python - Size: 8.79 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

picosonic/teletext_mri

Teletext animation of my MRI brain scan on BBC Micro computer

Language: Assembly - Size: 1.04 MB - Last synced at: 17 days ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

drpatelh/nf-core-mrimorph

UNDER CONSTRUCTION: Mouse brain morphometry analysis pipeline for MRI imaging data

Language: Nextflow - Size: 127 KB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1

Warvito/MRAI_workshop_tensorflow Fork of estherpuyol/MRAI_workshop

Tensorflow 2.0/Keras implementation of MR(A)I workshop material

Language: Jupyter Notebook - Size: 79 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0