GitHub / kesshijordan / Kesh_Autoseg_Tools

This is a set of tools associated with automatically segmenting tractography datasets using a combination of two complementary approaches: streamlines included in a fascicle model are identified based on 1) anatomical connectivity priors based on Freesurfer-derived regions of interest (ROIs) in the subject’s native space and 2) shape priors based on 3D streamline bundle atlases applied using Recobundles. The code for a methodology generating bundle atlases is also included, as well as useful command-line helper scripts such as identification of outliers, filtering, and merging functions.

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Topics: mri-brain, tractography

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